Wall clock time and date at job start Mon Mar 30 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46945 * 2 1 4 4 C 1.53244 * 109.46435 * 240.01253 * 2 1 3 5 5 H 1.09002 * 109.57506 * 177.86056 * 4 2 1 6 6 C 1.52998 * 109.58465 * 57.58819 * 4 2 1 7 7 S 1.81738 * 108.79674 * 297.65034 * 4 2 1 8 8 C 1.81739 * 102.30808 * 305.45869 * 7 4 2 9 9 C 1.53246 * 108.79470 * 54.54420 * 8 7 4 10 10 N 1.46370 * 109.48570 * 302.33971 * 9 8 7 11 11 S 1.65603 * 119.64974 * 245.10854 * 10 9 8 12 12 O 1.42097 * 106.40445 * 203.54220 * 11 10 9 13 13 O 1.42101 * 106.39850 * 336.46632 * 11 10 9 14 14 C 1.76196 * 107.21492 * 90.00068 * 11 10 9 15 15 H 1.08000 * 120.00636 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00002 * 180.02562 * 14 11 10 17 17 N 1.31524 * 119.99781 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00384 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47006 * 60.00240 * 18 16 14 20 20 H 1.48502 * 109.47365 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47091 * 300.00325 * 18 16 14 22 22 H 1.09008 * 109.47318 * 300.00837 * 1 2 3 23 23 H 1.09004 * 109.47078 * 60.00198 * 1 2 3 24 24 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47314 * 59.99343 * 6 4 2 26 26 H 1.08992 * 109.46897 * 179.97438 * 6 4 2 27 27 H 1.09000 * 109.46523 * 299.99623 * 6 4 2 28 28 H 1.09000 * 109.58873 * 294.74942 * 8 7 4 29 29 H 1.09000 * 109.58567 * 174.33283 * 8 7 4 30 30 H 1.09005 * 109.46655 * 62.34678 * 9 8 7 31 31 H 1.09004 * 109.46707 * 182.33578 * 9 8 7 32 32 H 0.96998 * 119.99723 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2514 5 1 3.1300 -0.6901 -1.2726 6 6 1.4830 -0.0385 -2.5015 7 16 1.4829 -2.4510 -1.1984 8 6 2.1018 -3.0083 0.4170 9 6 1.5849 -2.0547 1.4995 10 7 2.0178 -0.6900 1.1952 11 16 3.0712 0.0816 2.2138 12 8 2.8793 1.4746 2.0094 13 8 2.9337 -0.5441 3.4822 14 6 4.7010 -0.2838 1.6529 15 1 4.8459 -0.9118 0.7862 16 6 5.7917 0.2319 2.3204 17 7 5.6153 0.9971 3.3755 18 14 7.5196 -0.1548 1.7254 19 1 7.6855 0.3365 0.3339 20 1 8.5085 0.5154 2.6076 21 1 7.7384 -1.6231 1.7614 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8105 1.0008 -2.5239 26 1 1.8477 -0.5533 -3.3903 27 1 0.3939 -0.0759 -2.4807 28 1 3.1918 -3.0004 0.4133 29 1 1.7425 -4.0177 0.6175 30 1 0.4959 -2.0928 1.5272 31 1 1.9837 -2.3548 2.4685 32 1 6.3826 1.3596 3.8454 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160088803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:02 Heat of formation + Delta-G solvation = -120.307789 kcal Electronic energy + Delta-G solvation = -17490.019507 eV Core-core repulsion = 14701.941002 eV Total energy + Delta-G solvation = -2788.078505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.059 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.15612 -37.57767 -36.20876 -35.24495 -34.74628 -31.19931 -29.49679 -28.29717 -26.10667 -23.63876 -21.60395 -20.63782 -19.52481 -18.56108 -17.33983 -17.02887 -16.62743 -16.13731 -15.75871 -15.49570 -15.44343 -14.94528 -14.12540 -14.03654 -13.91433 -13.40153 -13.21510 -13.11555 -13.03596 -12.74325 -12.61033 -12.54568 -12.39154 -12.37275 -12.08387 -11.85411 -11.67715 -11.28232 -11.08620 -10.66333 -10.05043 -8.79970 -8.51784 -7.53589 0.21139 0.84820 1.29918 1.31349 1.44581 1.56532 2.15484 2.53266 2.66681 3.60834 3.70673 3.80852 4.02503 4.07276 4.10919 4.27660 4.40180 4.46043 4.56860 4.62591 4.79168 4.83044 4.94210 4.98179 5.03363 5.09849 5.21841 5.34730 5.43955 5.83649 5.90113 6.73355 8.16003 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.008748 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.719780 B = 3200.045751 C = 3473.249924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.068 4.068 5 H 0.076 0.924 6 C -0.129 4.129 7 S -0.246 6.246 8 C -0.100 4.100 9 C 0.113 3.887 10 N -1.004 6.004 11 S 2.714 3.286 12 O -1.038 7.038 13 O -1.038 7.038 14 C -1.037 5.037 15 H 0.114 0.886 16 C 0.073 3.927 17 N -0.893 5.893 18 Si 0.986 3.014 19 H -0.251 1.251 20 H -0.263 1.263 21 H -0.250 1.250 22 H 0.049 0.951 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 -6.069 -10.536 13.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.107 0.893 4 C -0.198 4.198 5 H 0.094 0.906 6 C -0.187 4.187 7 S -0.019 6.019 8 C -0.250 4.250 9 C -0.013 4.013 10 N -0.841 5.841 11 S 2.817 3.183 12 O -1.028 7.028 13 O -1.028 7.028 14 C -1.171 5.171 15 H 0.132 0.868 16 C -0.140 4.140 17 N -0.524 5.524 18 Si 0.804 3.196 19 H -0.175 1.175 20 H -0.187 1.187 21 H -0.174 1.174 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.158 0.842 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.621 -6.019 -10.392 14.224 hybrid contribution 2.148 0.470 0.806 2.342 sum -5.474 -5.549 -9.586 12.355 Atomic orbital electron populations 1.22198 0.92104 1.04259 1.02919 1.21153 0.97216 0.95649 0.82759 0.89290 1.23669 1.02699 0.94180 0.99282 0.90598 1.21691 1.02614 1.00615 0.93819 1.86254 1.76347 1.13257 1.26015 1.23911 1.03853 1.03222 0.93991 1.21537 1.01767 0.79800 0.98220 1.57595 1.62592 1.25065 1.38856 1.00147 0.74563 0.71659 0.71903 1.93289 1.87994 1.35028 1.86504 1.93292 1.88451 1.77900 1.43142 1.30896 1.14919 1.45009 1.26255 0.86779 1.25971 1.06504 0.89704 0.91860 1.69980 1.36516 1.28283 1.17639 0.85223 0.74463 0.80235 0.79701 1.17468 1.18676 1.17412 0.93195 0.88828 0.89833 0.90221 0.90759 0.89783 0.90440 0.84196 0.88116 0.89219 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 8.37 71.98 0.60 -3.54 16 2 C 0.14 4.72 2.73 45.09 0.12 4.84 16 3 H 0.09 3.38 6.80 -2.39 -0.02 3.37 16 4 C -0.07 -1.96 3.07 30.68 0.09 -1.86 16 5 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 6 C -0.13 -2.76 8.81 71.98 0.63 -2.12 16 7 S -0.25 -6.53 20.29 -56.49 -1.15 -7.68 16 8 C -0.10 -2.77 6.67 72.06 0.48 -2.29 16 9 C 0.11 3.71 5.83 86.49 0.50 4.21 16 10 N -1.00 -39.82 2.87 -493.09 -1.42 -41.23 16 11 S 2.71 145.38 4.96 -56.49 -0.28 145.10 16 12 O -1.04 -61.54 16.51 -128.00 -2.11 -63.65 16 13 O -1.04 -61.28 16.50 -128.00 -2.11 -63.39 16 14 C -1.04 -56.63 9.75 67.73 0.66 -55.97 16 15 H 0.11 5.66 7.81 -2.91 -0.02 5.64 16 16 C 0.07 4.03 5.46 84.65 0.46 4.49 16 17 N -0.89 -53.14 13.19 21.45 0.28 -52.86 16 18 Si 0.99 41.09 29.54 68.60 2.03 43.12 16 19 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 22 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.09 1.95 6.40 -2.39 -0.02 1.93 16 24 H 0.08 2.04 5.84 -2.39 -0.01 2.03 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.55 6.40 -2.39 -0.02 1.53 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.10 2.76 6.92 -2.38 -0.02 2.74 16 31 H 0.09 3.21 6.80 -2.38 -0.02 3.20 16 32 H 0.30 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -72.76 280.00 -0.08 -72.85 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 1.12 Total: 20.00 kcal Atomic # 6 Polarization: -55.81 SS G_CDS: 3.56 Total: -52.25 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -1.13 Total: -94.09 kcal Atomic # 8 Polarization: -122.82 SS G_CDS: -4.23 Total: -127.04 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 138.85 SS G_CDS: -1.43 Total: 137.42 kcal Total: -72.76 -0.08 -72.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160088803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.463 kcal (2) G-P(sol) polarization free energy of solvation -72.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds