Wall clock time and date at job start Mon Mar 30 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.47419 * 125.64948 * 269.69557 * 12 9 7 14 14 C 1.55123 * 104.72613 * 155.81481 * 13 12 9 15 15 C 1.55157 * 101.48534 * 37.29215 * 14 13 12 16 16 O 1.42903 * 110.87146 * 82.77000 * 15 14 13 17 17 C 1.50695 * 110.72130 * 205.96841 * 15 14 13 18 18 O 1.20828 * 119.99922 * 88.52653 * 17 15 14 19 19 O 1.34232 * 120.00189 * 268.52185 * 17 15 14 20 20 C 1.47026 * 125.64711 * 89.99455 * 12 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 110.36634 * 274.74769 * 13 12 9 23 23 H 1.09004 * 110.36565 * 37.06268 * 13 12 9 24 24 H 1.09006 * 111.19438 * 279.19264 * 14 13 12 25 25 H 1.09003 * 110.90721 * 155.27389 * 14 13 12 26 26 H 0.96701 * 114.00354 * 66.38436 * 16 15 14 27 27 H 0.96701 * 116.99627 * 179.97438 * 19 17 15 28 28 H 1.08992 * 109.88349 * 300.44553 * 20 12 9 29 29 H 1.09008 * 109.87769 * 61.45533 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.8271 -4.5704 -1.1984 14 6 4.1915 -5.1362 -0.7245 15 6 3.8441 -5.6212 0.7078 16 8 3.2457 -6.9185 0.6749 17 6 5.0716 -5.6246 1.5820 18 8 5.3779 -4.6307 2.1971 19 8 5.8247 -6.7316 1.6774 20 6 2.8303 -4.5643 1.1942 21 1 -0.4850 0.8401 0.0004 22 1 2.1818 -5.3753 -1.5506 23 1 2.9762 -3.8309 -1.9852 24 1 4.9537 -4.3573 -0.6990 25 1 4.5069 -5.9689 -1.3532 26 1 3.8414 -7.6190 0.3758 27 1 6.6025 -6.6855 2.2501 28 1 3.3390 -3.8129 1.7981 29 1 2.0457 -5.0423 1.7810 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306801582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:59 Heat of formation + Delta-G solvation = -220.946946 kcal Electronic energy + Delta-G solvation = -18983.586453 eV Core-core repulsion = 15612.557941 eV Total energy + Delta-G solvation = -3371.028512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.054 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83459 -38.36869 -36.44840 -35.30668 -35.22051 -33.97952 -33.07413 -30.07925 -28.87248 -26.11893 -24.25221 -22.12988 -20.52504 -18.89348 -18.61517 -17.79942 -17.67508 -16.36672 -15.74133 -15.47361 -15.13845 -14.78698 -14.30441 -14.06777 -13.83191 -13.24737 -12.95482 -12.60997 -12.21556 -11.97633 -11.73320 -11.71138 -11.47220 -11.24526 -11.18453 -10.86085 -10.61036 -10.42597 -10.30954 -10.22437 -10.07060 -9.22882 -8.96080 -8.24471 -6.69022 -5.31665 1.91521 2.14026 2.72422 3.10420 3.14245 3.20458 3.93941 4.06623 4.23615 4.33059 4.64988 4.81252 4.97808 5.27328 5.43327 5.61178 5.77426 5.90925 5.96909 6.06095 6.18828 6.22724 6.29724 6.74028 7.31084 7.34022 7.36987 7.67108 7.98528 8.89468 10.24729 Molecular weight = 265.05amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.006942 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.747808 B = 4032.490900 C = 4511.326943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.103 0.897 9 S 2.728 3.272 10 O -0.998 6.998 11 O -0.997 6.997 12 N -1.019 6.019 13 C 0.131 3.869 14 C -0.148 4.148 15 C 0.136 3.864 16 O -0.528 6.528 17 C 0.465 3.535 18 O -0.495 6.495 19 O -0.517 6.517 20 C 0.144 3.856 21 H 0.292 0.708 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.385 0.615 27 H 0.411 0.589 28 H 0.096 0.904 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.798 -11.515 -0.383 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.189 1.189 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.829 3.171 10 O -0.988 6.988 11 O -0.987 6.987 12 N -0.854 5.854 13 C 0.005 3.995 14 C -0.187 4.187 15 C 0.092 3.908 16 O -0.334 6.334 17 C 0.305 3.695 18 O -0.381 6.381 19 O -0.329 6.329 20 C 0.018 3.982 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.234 0.766 27 H 0.271 0.729 28 H 0.114 0.886 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.816 -10.929 -0.248 14.692 hybrid contribution 2.127 0.898 0.247 2.321 sum 11.942 -10.031 -0.001 15.596 Atomic orbital electron populations 1.69887 1.06778 1.30907 1.40005 1.24760 0.94488 1.00807 0.88460 0.86174 0.79854 0.79543 0.79823 1.20101 1.18795 1.18859 1.30574 1.06211 1.11615 1.66943 0.87876 1.00241 0.71514 0.72453 0.72864 1.93365 1.72370 1.87379 1.45707 1.93366 1.72146 1.87432 1.45773 1.59273 1.62211 1.53945 1.09963 1.21804 0.91472 0.97588 0.88602 1.23534 0.99849 1.02206 0.93141 1.22089 0.87917 0.86687 0.94087 1.86683 1.41574 1.15614 1.89569 1.24166 0.84639 0.80474 0.80252 1.90775 1.70265 1.34355 1.42673 1.84478 1.41099 1.40590 1.66759 1.21431 0.95035 0.92869 0.88889 0.89771 0.91212 0.89769 0.89014 0.88778 0.76631 0.72947 0.88570 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.10 13.19 55.43 0.73 -24.37 15 2 C 0.13 3.75 5.46 -17.82 -0.10 3.65 15 3 Si 0.92 20.85 29.54 -169.99 -5.02 15.83 15 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.26 -5.80 7.11 56.52 0.40 -5.40 15 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 15 7 C -1.02 -28.52 9.75 30.60 0.30 -28.22 15 8 H 0.10 2.65 7.81 -52.49 -0.41 2.24 15 9 S 2.73 74.04 5.22 -107.50 -0.56 73.48 15 10 O -1.00 -29.83 17.60 -57.17 -1.01 -30.84 15 11 O -1.00 -29.25 17.60 -57.17 -1.01 -30.25 15 12 N -1.02 -21.28 3.70 -111.29 -0.41 -21.70 15 13 C 0.13 2.15 6.98 -2.42 -0.02 2.13 15 14 C -0.15 -1.82 6.26 -24.47 -0.15 -1.97 15 15 C 0.14 1.87 1.23 -89.94 -0.11 1.76 15 16 O -0.53 -6.41 13.04 -48.63 -0.63 -7.05 15 17 C 0.46 5.90 7.31 36.00 0.26 6.17 15 18 O -0.49 -7.95 16.38 -18.75 -0.31 -8.26 15 19 O -0.52 -4.35 12.83 -44.32 -0.57 -4.92 15 20 C 0.14 2.66 6.30 -3.06 -0.02 2.64 15 21 H 0.29 7.78 8.31 -40.82 -0.34 7.44 15 22 H 0.07 1.06 8.14 -51.92 -0.42 0.64 15 23 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 24 H 0.09 1.11 8.04 -51.93 -0.42 0.69 15 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 15 26 H 0.38 2.86 8.64 45.56 0.39 3.25 15 27 H 0.41 1.77 9.10 45.56 0.41 2.19 15 28 H 0.10 1.83 6.78 -51.93 -0.35 1.48 15 29 H 0.09 1.59 8.07 -51.92 -0.42 1.17 15 LS Contribution 274.89 15.07 4.14 4.14 Total: -1.00 -37.95 274.89 -5.67 -43.63 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -1.19 Total: 4.14 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 0.16 Total: -13.84 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.32 Total: -46.06 kcal Atomic # 8 Polarization: -77.79 SS G_CDS: -3.52 Total: -81.31 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 74.04 SS G_CDS: -0.56 Total: 73.48 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -37.95 -5.67 -43.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306801582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.320 kcal (2) G-P(sol) polarization free energy of solvation -37.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds