Wall clock time and date at job start Mon Mar 30 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.47419 * 125.64948 * 269.69557 * 12 9 7 14 14 C 1.55123 * 104.72613 * 155.81481 * 13 12 9 15 15 C 1.55157 * 101.48534 * 37.29215 * 14 13 12 16 16 O 1.42903 * 110.87146 * 82.77000 * 15 14 13 17 17 C 1.50695 * 110.72130 * 205.96841 * 15 14 13 18 18 O 1.20828 * 119.99922 * 88.52653 * 17 15 14 19 19 O 1.34232 * 120.00189 * 268.52185 * 17 15 14 20 20 C 1.47026 * 125.64711 * 89.99455 * 12 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 110.36634 * 274.74769 * 13 12 9 23 23 H 1.09004 * 110.36565 * 37.06268 * 13 12 9 24 24 H 1.09006 * 111.19438 * 279.19264 * 14 13 12 25 25 H 1.09003 * 110.90721 * 155.27389 * 14 13 12 26 26 H 0.96701 * 114.00354 * 66.38436 * 16 15 14 27 27 H 0.96701 * 116.99627 * 179.97438 * 19 17 15 28 28 H 1.08992 * 109.88349 * 300.44553 * 20 12 9 29 29 H 1.09008 * 109.87769 * 61.45533 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.8271 -4.5704 -1.1984 14 6 4.1915 -5.1362 -0.7245 15 6 3.8441 -5.6212 0.7078 16 8 3.2457 -6.9185 0.6749 17 6 5.0716 -5.6246 1.5820 18 8 5.3779 -4.6307 2.1971 19 8 5.8247 -6.7316 1.6774 20 6 2.8303 -4.5643 1.1942 21 1 -0.4850 0.8401 0.0004 22 1 2.1818 -5.3753 -1.5506 23 1 2.9762 -3.8309 -1.9852 24 1 4.9537 -4.3573 -0.6990 25 1 4.5069 -5.9689 -1.3532 26 1 3.8414 -7.6190 0.3758 27 1 6.6025 -6.6855 2.2501 28 1 3.3390 -3.8129 1.7981 29 1 2.0457 -5.0423 1.7810 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306801582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:59 Heat of formation + Delta-G solvation = -256.360206 kcal Electronic energy + Delta-G solvation = -18985.122087 eV Core-core repulsion = 15612.557941 eV Total energy + Delta-G solvation = -3372.564146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.054 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85884 -39.49449 -37.49685 -37.36773 -36.42248 -36.21939 -35.20444 -31.35146 -30.14115 -28.29296 -25.43576 -23.41085 -21.61147 -20.81997 -19.68076 -19.43928 -18.75275 -18.38531 -17.18696 -16.78075 -16.60431 -16.22579 -16.02665 -15.61454 -15.22611 -14.82601 -14.16402 -14.00417 -13.98809 -13.43402 -13.23556 -13.02072 -12.93369 -12.68430 -12.61341 -12.57035 -12.52856 -12.33202 -12.24182 -11.88282 -11.25920 -11.09002 -11.05629 -9.90777 -8.77557 -7.52737 0.14737 0.94366 1.32259 1.35278 1.48444 1.77857 2.19257 2.54603 2.78025 2.94204 3.16331 3.35472 3.71270 4.04442 4.19311 4.25084 4.32889 4.52928 4.65611 4.71890 4.77718 5.01292 5.08652 5.28882 5.46666 5.65064 5.86970 6.62209 6.74300 6.89330 8.18131 Molecular weight = 265.05amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.006942 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.747808 B = 4032.490900 C = 4511.326943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.254 1.254 6 H -0.247 1.247 7 C -1.041 5.041 8 H 0.119 0.881 9 S 2.733 3.267 10 O -1.040 7.040 11 O -1.030 7.030 12 N -1.022 6.022 13 C 0.113 3.887 14 C -0.132 4.132 15 C 0.146 3.854 16 O -0.535 6.535 17 C 0.479 3.521 18 O -0.534 6.534 19 O -0.494 6.494 20 C 0.131 3.869 21 H 0.301 0.699 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.144 0.856 26 H 0.408 0.592 27 H 0.434 0.566 28 H 0.083 0.917 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.510 -12.263 -0.974 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.177 1.177 6 H -0.170 1.170 7 C -1.175 5.175 8 H 0.137 0.863 9 S 2.837 3.163 10 O -1.030 7.030 11 O -1.021 7.021 12 N -0.860 5.860 13 C -0.011 4.011 14 C -0.170 4.170 15 C 0.102 3.898 16 O -0.345 6.345 17 C 0.320 3.680 18 O -0.424 6.424 19 O -0.309 6.309 20 C 0.004 3.996 21 H 0.111 0.889 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.114 0.886 25 H 0.162 0.838 26 H 0.261 0.739 27 H 0.297 0.703 28 H 0.101 0.899 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.546 -11.743 -0.851 17.206 hybrid contribution 1.311 0.938 0.446 1.673 sum 13.858 -10.805 -0.405 17.577 Atomic orbital electron populations 1.69980 1.08759 1.32562 1.41155 1.26058 0.95436 1.05386 0.87432 0.85133 0.78779 0.74312 0.80759 1.18485 1.17737 1.17044 1.30922 1.07153 1.12425 1.67007 0.86334 0.99588 0.72051 0.73179 0.71512 1.93298 1.74360 1.88230 1.47135 1.93306 1.73866 1.88210 1.46695 1.58649 1.61628 1.53054 1.12707 1.22232 0.94012 0.97795 0.87101 1.23553 0.97158 1.03792 0.92533 1.21630 0.86985 0.86306 0.94916 1.86653 1.42486 1.15478 1.89875 1.23749 0.84377 0.80631 0.79221 1.90779 1.71261 1.36051 1.44279 1.84405 1.41613 1.37985 1.66847 1.21529 0.95902 0.94135 0.87984 0.88925 0.90137 0.89909 0.88589 0.83788 0.73856 0.70302 0.89934 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.26 13.19 21.45 0.28 -53.98 15 2 C 0.07 3.97 5.46 84.66 0.46 4.44 15 3 Si 0.99 42.07 29.54 68.60 2.03 44.10 15 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 5 H -0.25 -10.25 7.11 99.48 0.71 -9.55 15 6 H -0.25 -9.71 7.11 99.48 0.71 -9.00 15 7 C -1.04 -59.19 9.75 67.74 0.66 -58.53 15 8 H 0.12 6.12 7.81 -2.91 -0.02 6.09 15 9 S 2.73 153.63 5.22 -56.49 -0.29 153.34 15 10 O -1.04 -65.17 17.60 -128.00 -2.25 -67.43 15 11 O -1.03 -62.67 17.60 -128.00 -2.25 -64.92 15 12 N -1.02 -43.27 3.70 -506.02 -1.87 -45.14 15 13 C 0.11 3.57 6.98 86.93 0.61 4.17 15 14 C -0.13 -2.81 6.26 32.06 0.20 -2.60 15 15 C 0.15 3.69 1.23 -10.35 -0.01 3.68 15 16 O -0.53 -11.38 13.04 -136.16 -1.78 -13.16 15 17 C 0.48 10.91 7.31 71.23 0.52 11.43 15 18 O -0.53 -16.46 16.38 21.96 0.36 -16.10 15 19 O -0.49 -6.27 12.83 -46.60 -0.60 -6.87 15 20 C 0.13 4.85 6.30 86.73 0.55 5.40 15 21 H 0.30 16.34 8.31 -92.71 -0.77 15.57 15 22 H 0.08 2.34 8.14 -2.38 -0.02 2.32 15 23 H 0.08 2.60 8.14 -2.38 -0.02 2.58 15 24 H 0.10 2.02 8.04 -2.38 -0.02 2.00 15 25 H 0.14 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.41 4.23 8.64 -74.06 -0.64 3.59 15 27 H 0.43 1.91 9.10 -74.06 -0.67 1.24 15 28 H 0.08 3.25 6.78 -2.39 -0.02 3.24 15 29 H 0.07 2.79 8.07 -2.38 -0.02 2.77 15 Total: -1.00 -85.76 274.89 -3.49 -89.25 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.10 Total: 12.92 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 2.98 Total: -32.02 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -1.59 Total: -99.12 kcal Atomic # 8 Polarization: -161.95 SS G_CDS: -6.52 Total: -168.47 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 153.63 SS G_CDS: -0.29 Total: 153.34 kcal Total: -85.76 -3.49 -89.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306801582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.109 kcal (2) G-P(sol) polarization free energy of solvation -85.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds