Wall clock time and date at job start Mon Mar 30 2020 05:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99938 * 2 1 4 4 C 1.52998 * 109.47258 * 298.12589 * 3 2 1 5 5 C 1.50700 * 115.54984 * 296.30374 * 4 3 2 6 6 H 1.07996 * 120.00062 * 145.25975 * 5 4 3 7 7 C 1.37879 * 119.99757 * 325.26070 * 5 4 3 8 8 N 1.31511 * 120.00400 * 337.64163 * 7 5 4 9 9 Si 1.86808 * 119.99726 * 157.64200 * 7 5 4 10 10 H 1.48491 * 109.47283 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46807 * 119.99855 * 9 7 5 12 12 H 1.48497 * 109.46851 * 239.99802 * 9 7 5 13 13 C 1.52994 * 117.49588 * 150.63611 * 4 3 2 14 14 C 1.52994 * 117.49614 * 81.97505 * 4 3 2 15 15 C 1.46904 * 110.99644 * 123.95418 * 2 1 3 16 16 H 1.08998 * 109.57545 * 298.18109 * 15 2 1 17 17 C 1.53144 * 109.57907 * 58.44847 * 15 2 1 18 18 N 1.46904 * 109.37288 * 119.80045 * 17 15 2 19 19 C 1.46945 * 111.05223 * 298.00132 * 18 17 15 20 20 C 1.53124 * 109.35371 * 61.96092 * 19 18 17 21 21 C 1.53385 * 108.84262 * 0.05854 * 20 19 18 22 22 C 1.53391 * 109.26901 * 59.30011 * 21 20 19 23 23 C 1.46944 * 111.05643 * 61.99700 * 18 17 15 24 24 H 1.08992 * 109.47417 * 303.41038 * 1 2 3 25 25 H 1.09006 * 109.47206 * 63.41144 * 1 2 3 26 26 H 1.09009 * 109.47168 * 183.40635 * 1 2 3 27 27 H 1.09003 * 109.47194 * 58.12665 * 3 2 1 28 28 H 1.09006 * 109.46850 * 178.12210 * 3 2 1 29 29 H 0.96998 * 120.00501 * 185.33271 * 8 7 5 30 30 H 1.09002 * 117.50440 * 359.97438 * 13 4 3 31 31 H 1.09008 * 117.49828 * 145.02340 * 13 4 3 32 32 H 1.09006 * 117.49544 * 214.97441 * 14 4 3 33 33 H 1.08994 * 117.50399 * 359.97438 * 14 4 3 34 34 H 1.09003 * 109.48797 * 239.76916 * 17 15 2 35 35 H 1.09000 * 109.48816 * 359.82570 * 17 15 2 36 36 H 1.09003 * 109.49440 * 301.99075 * 19 18 17 37 37 H 1.09003 * 109.50555 * 181.93382 * 19 18 17 38 38 H 1.09003 * 109.57668 * 240.24697 * 20 19 18 39 39 H 1.09007 * 109.67923 * 119.92730 * 20 19 18 40 40 H 1.09000 * 110.11317 * 180.36313 * 21 20 19 41 41 H 1.09003 * 109.57597 * 60.51006 * 22 21 20 42 42 H 1.09000 * 109.57651 * 180.89080 * 22 21 20 43 43 H 1.09000 * 109.48940 * 58.00785 * 23 18 17 44 44 H 1.09004 * 109.48722 * 178.05722 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5433 2.0912 -1.2721 5 6 2.0629 1.5155 -2.5643 6 1 1.4447 1.5313 -3.4497 7 6 3.3274 0.9684 -2.6160 8 7 4.2320 1.3178 -1.7276 9 14 3.7559 -0.2692 -3.9482 10 1 2.5720 -0.4916 -4.8164 11 1 4.8793 0.2536 -4.7665 12 1 4.1568 -1.5536 -3.3200 13 6 1.3599 3.6083 -1.1980 14 6 0.1364 2.6922 -1.2817 15 6 1.9954 -0.7660 1.1376 16 1 1.6734 -0.3026 2.0702 17 6 1.4744 -2.2046 1.0727 18 7 2.6106 -3.1304 0.9725 19 6 3.3782 -2.8926 -0.2578 20 6 3.9529 -1.4736 -0.2311 21 6 3.5277 -0.7914 1.0752 22 6 4.0524 -1.6048 2.2651 23 6 3.4742 -3.0365 2.1576 24 1 -0.3634 0.5658 0.8578 25 1 -0.3634 0.4600 -0.9190 26 1 -0.3634 -1.0259 0.0611 27 1 1.6190 1.9051 0.8727 28 1 3.0845 1.3425 0.0337 29 1 5.1425 0.9934 -1.8090 30 1 1.5608 4.0936 -0.2429 31 1 1.6145 4.1900 -2.0841 32 1 -0.4133 2.6715 -2.2227 33 1 -0.4673 2.5744 -0.3819 34 1 0.9036 -2.4258 1.9747 35 1 0.8330 -2.3200 0.1989 36 1 2.7236 -3.0037 -1.1222 37 1 4.1929 -3.6138 -0.3235 38 1 3.5691 -0.9081 -1.0802 39 1 5.0409 -1.5171 -0.2831 40 1 3.9212 0.2244 1.1129 41 1 5.1407 -1.6509 2.2246 42 1 3.7396 -1.1329 3.1965 43 1 2.8894 -3.2522 3.0518 44 1 4.2880 -3.7567 2.0726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310111902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:54 Heat of formation + Delta-G solvation = 37.424791 kcal Electronic energy + Delta-G solvation = -22565.313986 eV Core-core repulsion = 19711.096402 eV Total energy + Delta-G solvation = -2854.217584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71826 -38.99501 -36.21412 -34.18827 -32.93851 -31.66661 -30.51587 -28.44913 -27.33335 -25.12440 -23.71836 -23.69639 -22.86541 -22.07095 -20.76525 -18.37028 -17.94850 -17.29772 -17.22047 -16.94345 -16.52567 -15.62399 -15.30345 -15.13367 -14.61152 -14.26821 -13.84141 -13.71506 -13.38445 -13.28498 -13.17085 -13.03389 -12.87797 -12.61869 -12.56687 -12.52803 -12.38756 -12.21791 -12.00281 -11.84812 -11.58893 -11.13486 -11.02992 -10.96922 -10.85481 -10.36748 -9.80475 -9.09677 -8.79513 -7.98740 -5.93478 1.40937 1.49145 1.55346 2.50533 3.02517 3.14495 3.27348 3.72548 3.78979 3.93859 4.07877 4.22820 4.31735 4.36943 4.38952 4.43839 4.46015 4.52631 4.57544 4.67812 4.69612 4.77680 4.80789 4.89681 4.94081 4.95933 4.97751 5.07775 5.09365 5.17005 5.23485 5.30377 5.33383 5.39598 5.43764 5.55995 5.70990 5.79506 6.09704 6.14828 6.24823 6.45112 6.60436 6.68621 6.97908 7.62043 9.03515 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.010065 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.367184 B = 2781.268752 C = 3557.099710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.517 5.517 3 C 0.102 3.898 4 C 0.049 3.951 5 C -0.501 4.501 6 H 0.037 0.963 7 C 0.074 3.926 8 N -0.874 5.874 9 Si 0.911 3.089 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.266 1.266 13 C -0.213 4.213 14 C -0.193 4.193 15 C 0.061 3.939 16 H 0.026 0.974 17 C 0.064 3.936 18 N -0.527 5.527 19 C 0.062 3.938 20 C -0.144 4.144 21 C -0.074 4.074 22 C -0.143 4.143 23 C 0.055 3.945 24 H 0.013 0.987 25 H 0.064 0.936 26 H 0.074 0.926 27 H -0.018 1.018 28 H 0.103 0.897 29 H 0.259 0.741 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 -7.856 8.656 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.240 5.240 3 C -0.026 4.026 4 C 0.048 3.952 5 C -0.538 4.538 6 H 0.055 0.945 7 C -0.129 4.129 8 N -0.511 5.511 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.191 1.191 13 C -0.252 4.252 14 C -0.230 4.230 15 C -0.049 4.049 16 H 0.044 0.956 17 C -0.065 4.065 18 N -0.247 5.247 19 C -0.067 4.067 20 C -0.183 4.183 21 C -0.093 4.093 22 C -0.183 4.183 23 C -0.073 4.073 24 H 0.031 0.969 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.000 1.000 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.913 -8.709 8.299 12.181 hybrid contribution 0.423 1.395 -0.334 1.495 sum -1.490 -7.314 7.966 10.917 Atomic orbital electron populations 1.22469 0.88190 1.01233 1.00201 1.61854 1.07042 1.14041 1.41091 1.21633 1.02506 0.86337 0.92082 1.18945 0.92408 0.89160 0.94666 1.20357 1.00231 1.39037 0.94186 0.94518 1.24986 0.95751 0.95813 0.96328 1.69960 1.01876 1.42750 1.36472 0.86339 0.77319 0.81987 0.80536 1.20647 1.21947 1.19135 1.22993 1.05057 0.97468 0.99682 1.22911 0.91744 1.07910 1.00473 1.22340 0.95166 0.96083 0.91323 0.95630 1.22356 0.93376 0.87873 1.02874 1.62644 1.09805 1.49606 1.02606 1.22059 0.97082 0.95114 0.92424 1.22171 0.98670 0.97654 0.99842 1.21018 0.94395 0.98616 0.95304 1.22555 1.00910 0.97413 0.97425 1.22559 0.96750 0.94845 0.93172 0.96865 0.91777 0.90720 1.00018 0.87931 0.93137 0.91323 0.91575 0.90954 0.89994 0.89263 0.90393 0.92533 0.90521 0.89911 0.94358 0.93024 0.91581 0.91119 0.89297 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 8.16 127.69 1.04 2.00 16 2 N -0.52 -20.63 3.73 -895.99 -3.34 -23.98 16 3 C 0.10 4.62 4.12 86.30 0.36 4.98 16 4 C 0.05 2.36 1.43 -52.93 -0.08 2.29 16 5 C -0.50 -26.86 8.86 25.60 0.23 -26.64 16 6 H 0.04 2.05 7.91 -2.91 -0.02 2.03 16 7 C 0.07 3.86 3.86 84.66 0.33 4.18 16 8 N -0.87 -45.79 10.30 21.45 0.22 -45.57 16 9 Si 0.91 42.43 28.47 68.60 1.95 44.38 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C -0.21 -9.77 9.93 30.62 0.30 -9.46 16 14 C -0.19 -8.20 7.84 30.62 0.24 -7.96 16 15 C 0.06 2.09 1.90 45.09 0.09 2.18 16 16 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 17 C 0.06 1.88 5.16 86.35 0.45 2.33 16 18 N -0.53 -15.16 5.22 -891.73 -4.65 -19.81 16 19 C 0.06 2.04 6.09 86.34 0.53 2.56 16 20 C -0.14 -5.50 5.56 30.76 0.17 -5.33 16 21 C -0.07 -2.61 2.48 -10.40 -0.03 -2.63 16 22 C -0.14 -3.89 5.90 31.33 0.18 -3.71 16 23 C 0.06 1.32 6.13 86.90 0.53 1.85 16 24 H 0.01 0.43 8.10 -2.39 -0.02 0.41 16 25 H 0.06 2.47 5.83 -2.38 -0.01 2.46 16 26 H 0.07 2.27 6.00 -2.38 -0.01 2.26 16 27 H -0.02 -0.82 8.10 -2.39 -0.02 -0.84 16 28 H 0.10 5.13 3.66 -2.38 -0.01 5.12 16 29 H 0.26 13.15 8.32 -92.71 -0.77 12.38 16 30 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 32 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 33 H 0.08 3.16 7.48 -2.39 -0.02 3.14 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 2.47 6.19 -2.39 -0.01 2.46 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.08 3.73 3.91 -2.39 -0.01 3.72 16 39 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.05 2.15 6.30 -2.39 -0.02 2.13 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -54.48 315.97 -0.52 -55.00 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.96 Total: 23.34 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.34 Total: -33.36 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -7.78 Total: -89.36 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.95 Total: 44.38 kcal Total: -54.48 -0.52 -55.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310111902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.429 kcal (2) G-P(sol) polarization free energy of solvation -54.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds