Wall clock time and date at job start Mon Mar 30 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.44665 * 111.00145 * 2 1 4 4 C 1.51094 * 112.83200 * 213.28202 * 3 2 1 5 5 C 1.51196 * 113.75670 * 278.05056 * 4 3 2 6 6 H 1.09000 * 112.93465 * 185.84003 * 5 4 3 7 7 C 1.55352 * 104.10519 * 308.68636 * 5 4 3 8 8 C 1.54114 * 105.03419 * 92.77727 * 7 5 4 9 9 C 1.50690 * 105.01699 * 0.28220 * 8 7 5 10 10 H 1.09001 * 103.27029 * 129.02678 * 9 8 7 11 11 C 1.51033 * 123.16195 * 245.45870 * 9 8 7 12 12 N 1.48523 * 109.32430 * 19.63811 * 9 8 7 13 13 C 1.46899 * 111.00314 * 87.07679 * 12 9 8 14 14 C 1.52999 * 109.47178 * 62.63864 * 13 12 9 15 15 C 1.50698 * 115.54927 * 54.04088 * 14 13 12 16 16 H 1.08003 * 119.99737 * 0.08697 * 15 14 13 17 17 C 1.37875 * 120.00279 * 179.81624 * 15 14 13 18 18 N 1.31516 * 119.99637 * 0.26560 * 17 15 14 19 19 Si 1.86804 * 120.00314 * 180.27818 * 17 15 14 20 20 H 1.48496 * 109.47236 * 59.99390 * 19 17 15 21 21 H 1.48493 * 109.47053 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46403 * 299.99320 * 19 17 15 23 23 C 1.52998 * 117.49840 * 199.71110 * 14 13 12 24 24 C 1.52994 * 117.49783 * 268.37069 * 14 13 12 25 25 H 1.08998 * 109.47045 * 295.13079 * 1 2 3 26 26 H 1.08996 * 109.47269 * 55.13212 * 1 2 3 27 27 H 1.09001 * 109.46962 * 175.13471 * 1 2 3 28 28 H 1.09000 * 108.80699 * 334.14857 * 3 2 1 29 29 H 1.09004 * 108.80842 * 92.41227 * 3 2 1 30 30 H 1.09000 * 108.62666 * 156.94519 * 4 3 2 31 31 H 1.09000 * 108.62465 * 39.15355 * 4 3 2 32 32 H 1.08998 * 110.33067 * 211.66596 * 7 5 4 33 33 H 1.09001 * 110.32665 * 333.78409 * 7 5 4 34 34 H 1.08998 * 110.31088 * 119.91939 * 8 7 5 35 35 H 1.09001 * 110.30921 * 242.09805 * 8 7 5 36 36 H 1.08996 * 109.32680 * 197.29269 * 11 9 8 37 37 H 1.09004 * 109.32601 * 316.76559 * 11 9 8 38 38 H 1.09003 * 109.46551 * 302.63945 * 13 12 9 39 39 H 1.08998 * 109.47228 * 182.64147 * 13 12 9 40 40 H 0.96999 * 119.99758 * 179.97438 * 18 17 15 41 41 H 1.09001 * 117.49581 * 215.00712 * 23 14 13 42 42 H 1.09000 * 117.49772 * 0.02562 * 23 14 13 43 43 H 1.09000 * 117.50386 * 359.97438 * 24 14 13 44 44 H 1.09005 * 117.49541 * 144.97482 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9874 1.3506 0.0000 4 6 3.2843 1.4807 -0.7642 5 6 4.5038 1.0744 0.0320 6 1 5.4385 1.2683 -0.4942 7 6 4.3766 1.8776 1.3556 8 6 3.6371 0.9354 2.3255 9 6 3.3918 -0.3240 1.5353 10 1 3.7706 -1.1083 2.1907 11 6 2.0113 -0.8076 1.1591 12 7 4.3228 -0.3680 0.3789 13 6 5.6022 -0.9833 0.7562 14 6 5.3649 -2.4340 1.1804 15 6 4.6315 -3.2916 0.1816 16 1 4.3130 -2.8707 -0.7607 17 6 4.3718 -4.6150 0.4683 18 7 4.7597 -5.1275 1.6157 19 14 3.4695 -5.6801 -0.7730 20 1 4.2463 -5.7327 -2.0375 21 1 3.3170 -7.0533 -0.2288 22 1 2.1282 -5.1010 -1.0395 23 6 6.4439 -3.1066 2.0315 24 6 5.1100 -2.7033 2.6647 25 1 -0.3633 0.4364 0.9304 26 1 -0.3633 0.5875 -0.8431 27 1 -0.3633 -1.0240 -0.0872 28 1 1.2464 2.0114 -0.4499 29 1 2.1539 1.6631 1.0309 30 1 3.4020 2.5185 -1.0760 31 1 3.2270 0.8566 -1.6560 32 1 5.3642 2.1233 1.7458 33 1 3.7975 2.7866 1.1928 34 1 4.2543 0.7330 3.2007 35 1 2.6850 1.3731 2.6258 36 1 2.0624 -1.8583 0.8739 37 1 1.3457 -0.7009 2.0157 38 1 6.0411 -0.4292 1.5859 39 1 6.2816 -0.9604 -0.0959 40 1 4.5767 -6.0585 1.8176 41 1 6.6232 -4.1694 1.8689 42 1 7.3225 -2.5154 2.2895 43 1 5.1116 -1.8470 3.3392 44 1 4.4114 -3.5005 2.9188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394359081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:15 Heat of formation + Delta-G solvation = 70.532500 kcal Electronic energy + Delta-G solvation = -22272.188268 eV Core-core repulsion = 19419.406343 eV Total energy + Delta-G solvation = -2852.781926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39649 -36.76106 -35.36777 -32.47333 -31.52930 -30.67429 -28.49423 -26.45117 -25.57400 -24.55363 -23.65102 -21.16724 -20.74930 -19.32223 -19.02183 -18.52130 -16.51104 -15.58230 -15.19087 -14.97510 -14.75629 -14.03533 -13.89768 -13.57440 -12.99563 -12.84335 -12.78192 -12.50503 -11.98361 -11.77741 -11.60621 -11.38205 -11.13950 -11.01210 -10.92398 -10.71130 -10.60702 -10.42886 -10.38626 -10.10263 -9.98458 -9.89597 -9.54340 -9.25695 -8.74128 -8.22481 -7.94982 -7.72608 -7.53529 -5.83332 -3.84785 3.40619 3.44015 3.49605 4.24051 4.52323 4.66311 4.93538 4.99619 5.15768 5.21950 5.31359 5.52681 5.59580 5.64676 5.71830 5.81817 5.84835 5.89566 5.99484 6.03995 6.09201 6.12741 6.21267 6.26514 6.28262 6.37592 6.41760 6.44583 6.60488 6.69494 6.74435 6.78942 6.94761 7.07684 7.26738 7.36314 7.46453 7.65947 7.75447 7.80429 7.97848 8.16838 8.27252 8.67604 9.14937 9.69354 11.13306 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.008477 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.537341 B = 3302.088391 C = 4072.042231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.535 5.535 3 C 0.058 3.942 4 C -0.101 4.101 5 C 0.054 3.946 6 H 0.086 0.914 7 C -0.148 4.148 8 C -0.125 4.125 9 C 0.025 3.975 10 H 0.089 0.911 11 C 0.099 3.901 12 N -0.451 5.451 13 C 0.087 3.913 14 C 0.028 3.972 15 C -0.444 4.444 16 H 0.069 0.931 17 C 0.052 3.948 18 N -0.888 5.888 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.276 1.276 23 C -0.190 4.190 24 C -0.194 4.194 25 H 0.014 0.986 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.029 0.971 38 H 0.009 0.991 39 H 0.064 0.936 40 H 0.256 0.744 41 H 0.111 0.889 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 12.670 -0.053 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.260 5.260 3 C -0.070 4.070 4 C -0.139 4.139 5 C -0.055 4.055 6 H 0.104 0.896 7 C -0.187 4.187 8 C -0.164 4.164 9 C -0.084 4.084 10 H 0.107 0.893 11 C -0.027 4.027 12 N -0.173 5.173 13 C -0.041 4.041 14 C 0.027 3.973 15 C -0.482 4.482 16 H 0.087 0.913 17 C -0.148 4.148 18 N -0.528 5.528 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.202 1.202 23 C -0.228 4.228 24 C -0.232 4.232 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.129 0.871 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.341 11.900 -0.863 12.696 hybrid contribution -0.291 0.216 1.058 1.119 sum -4.632 12.116 0.196 12.973 Atomic orbital electron populations 1.22385 0.88653 1.01830 0.99105 1.62217 1.05663 1.13405 1.44735 1.21359 0.96196 0.89685 0.99789 1.20845 0.93683 0.99289 1.00093 1.22954 0.97766 0.89665 0.95130 0.89568 1.23154 0.99752 0.98933 0.96895 1.21959 0.99813 0.96360 0.98242 1.21631 0.94914 0.98385 0.93439 0.89274 1.22417 0.91652 0.99277 0.89333 1.65805 1.09901 1.10105 1.31440 1.21825 0.90067 0.94843 0.97349 1.18958 0.98636 0.89897 0.89769 1.20556 1.32824 0.93033 1.01764 0.91256 1.25021 0.96254 0.98065 0.95441 1.70013 1.47053 1.13654 1.22071 0.86619 0.80522 0.79082 0.81535 1.20486 1.21821 1.20190 1.22830 0.89826 1.02439 1.07736 1.22832 1.01659 1.01047 0.97634 0.96781 0.92214 0.91626 0.93143 0.93800 0.93041 0.90746 0.92645 0.91468 0.91798 0.91934 0.88344 0.95282 0.97317 0.91783 0.93412 0.87094 0.94378 0.94644 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.36 60.06 0.56 0.96 16 2 N -0.53 -8.82 4.92 -243.24 -1.20 -10.01 16 3 C 0.06 0.84 4.85 -5.98 -0.03 0.81 16 4 C -0.10 -1.46 4.78 -28.60 -0.14 -1.60 16 5 C 0.05 0.84 3.71 -65.95 -0.24 0.60 16 6 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 7 C -0.15 -2.04 5.80 -24.90 -0.14 -2.18 16 8 C -0.12 -1.89 5.71 -27.31 -0.16 -2.05 16 9 C 0.03 0.46 1.62 -68.96 -0.11 0.35 16 10 H 0.09 1.85 3.63 -51.93 -0.19 1.66 16 11 C 0.10 1.80 5.98 -2.31 -0.01 1.78 16 12 N -0.45 -8.63 4.52 -217.50 -0.98 -9.62 16 13 C 0.09 1.82 4.70 -3.83 -0.02 1.80 16 14 C 0.03 0.68 1.72 -155.67 -0.27 0.41 16 15 C -0.44 -11.91 8.87 -34.44 -0.31 -12.21 16 16 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 17 C 0.05 1.40 5.27 -17.82 -0.09 1.31 16 18 N -0.89 -24.61 8.59 55.43 0.48 -24.13 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.19 -4.71 9.38 -26.70 -0.25 -4.96 16 24 C -0.19 -4.71 7.50 -26.70 -0.20 -4.91 16 25 H 0.01 0.18 8.09 -51.93 -0.42 -0.25 16 26 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.65 7.50 -51.93 -0.39 0.26 16 29 H 0.04 0.63 3.52 -51.93 -0.18 0.44 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.82 7.05 -51.93 -0.37 0.45 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.87 6.86 -51.93 -0.36 0.51 16 36 H 0.10 2.12 8.14 -51.93 -0.42 1.69 16 37 H 0.03 0.48 7.87 -51.93 -0.41 0.07 16 38 H 0.01 0.17 7.89 -51.93 -0.41 -0.24 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.11 3.04 6.28 -51.93 -0.33 2.72 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.80 7.53 -51.93 -0.39 0.41 16 44 H 0.11 2.95 6.29 -51.93 -0.33 2.63 16 LS Contribution 317.84 15.07 4.79 4.79 Total: -1.00 -27.37 317.84 -10.87 -38.24 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.52 Total: 4.11 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.41 Total: -19.89 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -1.71 Total: -43.76 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.37 -10.87 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394359081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.772 kcal (2) G-P(sol) polarization free energy of solvation -27.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds