Wall clock time and date at job start Mon Mar 30 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.44665 * 111.00145 * 2 1 4 4 C 1.51094 * 112.83200 * 213.28202 * 3 2 1 5 5 C 1.51196 * 113.75670 * 278.05056 * 4 3 2 6 6 H 1.09000 * 112.93465 * 185.84003 * 5 4 3 7 7 C 1.55352 * 104.10519 * 308.68636 * 5 4 3 8 8 C 1.54114 * 105.03419 * 92.77727 * 7 5 4 9 9 C 1.50690 * 105.01699 * 0.28220 * 8 7 5 10 10 H 1.09001 * 103.27029 * 129.02678 * 9 8 7 11 11 C 1.51033 * 123.16195 * 245.45870 * 9 8 7 12 12 N 1.48523 * 109.32430 * 19.63811 * 9 8 7 13 13 C 1.46899 * 111.00314 * 87.07679 * 12 9 8 14 14 C 1.52999 * 109.47178 * 62.63864 * 13 12 9 15 15 C 1.50698 * 115.54927 * 54.04088 * 14 13 12 16 16 H 1.08003 * 119.99737 * 0.08697 * 15 14 13 17 17 C 1.37875 * 120.00279 * 179.81624 * 15 14 13 18 18 N 1.31516 * 119.99637 * 0.26560 * 17 15 14 19 19 Si 1.86804 * 120.00314 * 180.27818 * 17 15 14 20 20 H 1.48496 * 109.47236 * 59.99390 * 19 17 15 21 21 H 1.48493 * 109.47053 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46403 * 299.99320 * 19 17 15 23 23 C 1.52998 * 117.49840 * 199.71110 * 14 13 12 24 24 C 1.52994 * 117.49783 * 268.37069 * 14 13 12 25 25 H 1.08998 * 109.47045 * 295.13079 * 1 2 3 26 26 H 1.08996 * 109.47269 * 55.13212 * 1 2 3 27 27 H 1.09001 * 109.46962 * 175.13471 * 1 2 3 28 28 H 1.09000 * 108.80699 * 334.14857 * 3 2 1 29 29 H 1.09004 * 108.80842 * 92.41227 * 3 2 1 30 30 H 1.09000 * 108.62666 * 156.94519 * 4 3 2 31 31 H 1.09000 * 108.62465 * 39.15355 * 4 3 2 32 32 H 1.08998 * 110.33067 * 211.66596 * 7 5 4 33 33 H 1.09001 * 110.32665 * 333.78409 * 7 5 4 34 34 H 1.08998 * 110.31088 * 119.91939 * 8 7 5 35 35 H 1.09001 * 110.30921 * 242.09805 * 8 7 5 36 36 H 1.08996 * 109.32680 * 197.29269 * 11 9 8 37 37 H 1.09004 * 109.32601 * 316.76559 * 11 9 8 38 38 H 1.09003 * 109.46551 * 302.63945 * 13 12 9 39 39 H 1.08998 * 109.47228 * 182.64147 * 13 12 9 40 40 H 0.96999 * 119.99758 * 179.97438 * 18 17 15 41 41 H 1.09001 * 117.49581 * 215.00712 * 23 14 13 42 42 H 1.09000 * 117.49772 * 0.02562 * 23 14 13 43 43 H 1.09000 * 117.50386 * 359.97438 * 24 14 13 44 44 H 1.09005 * 117.49541 * 144.97482 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9874 1.3506 0.0000 4 6 3.2843 1.4807 -0.7642 5 6 4.5038 1.0744 0.0320 6 1 5.4385 1.2683 -0.4942 7 6 4.3766 1.8776 1.3556 8 6 3.6371 0.9354 2.3255 9 6 3.3918 -0.3240 1.5353 10 1 3.7706 -1.1083 2.1907 11 6 2.0113 -0.8076 1.1591 12 7 4.3228 -0.3680 0.3789 13 6 5.6022 -0.9833 0.7562 14 6 5.3649 -2.4340 1.1804 15 6 4.6315 -3.2916 0.1816 16 1 4.3130 -2.8707 -0.7607 17 6 4.3718 -4.6150 0.4683 18 7 4.7597 -5.1275 1.6157 19 14 3.4695 -5.6801 -0.7730 20 1 4.2463 -5.7327 -2.0375 21 1 3.3170 -7.0533 -0.2288 22 1 2.1282 -5.1010 -1.0395 23 6 6.4439 -3.1066 2.0315 24 6 5.1100 -2.7033 2.6647 25 1 -0.3633 0.4364 0.9304 26 1 -0.3633 0.5875 -0.8431 27 1 -0.3633 -1.0240 -0.0872 28 1 1.2464 2.0114 -0.4499 29 1 2.1539 1.6631 1.0309 30 1 3.4020 2.5185 -1.0760 31 1 3.2270 0.8566 -1.6560 32 1 5.3642 2.1233 1.7458 33 1 3.7975 2.7866 1.1928 34 1 4.2543 0.7330 3.2007 35 1 2.6850 1.3731 2.6258 36 1 2.0624 -1.8583 0.8739 37 1 1.3457 -0.7009 2.0157 38 1 6.0411 -0.4292 1.5859 39 1 6.2816 -0.9604 -0.0959 40 1 4.5767 -6.0585 1.8176 41 1 6.6232 -4.1694 1.8689 42 1 7.3225 -2.5154 2.2895 43 1 5.1116 -1.8470 3.3392 44 1 4.4114 -3.5005 2.9188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394359081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:15 Heat of formation + Delta-G solvation = 53.796751 kcal Electronic energy + Delta-G solvation = -22272.913985 eV Core-core repulsion = 19419.406343 eV Total energy + Delta-G solvation = -2853.507642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71144 -38.53415 -36.72242 -33.97710 -33.28568 -32.17568 -29.68628 -28.00974 -27.35120 -25.93607 -25.06832 -22.81038 -22.21992 -21.01477 -20.26969 -20.12115 -18.10464 -17.31666 -16.74418 -16.40822 -16.26196 -15.45554 -15.24280 -15.15233 -14.57680 -14.30532 -14.20398 -13.79049 -13.53870 -13.11298 -12.96962 -12.91136 -12.70503 -12.61654 -12.41294 -12.28069 -12.21500 -11.98554 -11.91741 -11.81794 -11.58149 -11.30887 -11.06341 -10.90070 -10.71727 -10.13031 -9.96040 -9.07320 -8.85388 -7.92887 -5.99176 1.43816 1.44539 1.52553 2.48843 2.95632 3.09955 3.39085 3.64953 3.81298 3.98436 4.04290 4.17857 4.36037 4.42868 4.43421 4.52205 4.56723 4.58843 4.65693 4.70479 4.80828 4.82533 4.85967 4.88657 4.97970 5.02950 5.06581 5.08846 5.16632 5.18473 5.28448 5.34135 5.41041 5.45590 5.53850 5.61858 5.71824 6.00909 6.18885 6.21938 6.36026 6.46263 6.59230 6.65511 7.02826 7.56453 9.01221 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.008477 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.537341 B = 3302.088391 C = 4072.042231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.556 5.556 3 C 0.056 3.944 4 C -0.097 4.097 5 C 0.048 3.952 6 H 0.092 0.908 7 C -0.137 4.137 8 C -0.121 4.121 9 C 0.035 3.965 10 H 0.055 0.945 11 C 0.104 3.896 12 N -0.475 5.475 13 C 0.099 3.901 14 C 0.024 3.976 15 C -0.453 4.453 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.906 5.906 19 Si 0.947 3.053 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.195 4.195 24 C -0.180 4.180 25 H 0.028 0.972 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.018 0.982 39 H 0.060 0.940 40 H 0.253 0.747 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 15.393 -0.260 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.281 5.281 3 C -0.072 4.072 4 C -0.136 4.136 5 C -0.061 4.061 6 H 0.110 0.890 7 C -0.176 4.176 8 C -0.160 4.160 9 C -0.075 4.075 10 H 0.074 0.926 11 C -0.022 4.022 12 N -0.197 5.197 13 C -0.029 4.029 14 C 0.024 3.976 15 C -0.491 4.491 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.546 5.546 19 Si 0.775 3.225 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.234 4.234 24 C -0.218 4.218 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.937 14.634 -1.076 15.482 hybrid contribution -0.139 -0.639 1.093 1.273 sum -5.076 13.995 0.017 14.888 Atomic orbital electron populations 1.22411 0.87041 1.01762 1.00612 1.62124 1.07350 1.14757 1.43903 1.21444 0.96632 0.88692 1.00419 1.20860 0.93326 1.00617 0.98749 1.23091 0.98735 0.87658 0.96573 0.88983 1.23082 1.00482 0.99035 0.94981 1.21915 1.00940 0.95163 0.97973 1.21650 0.94238 0.98936 0.92630 0.92633 1.22120 0.92502 0.97197 0.90416 1.65756 1.09043 1.12882 1.32028 1.21588 0.91140 0.92868 0.97306 1.19050 0.97706 0.91675 0.89207 1.20666 1.33051 0.93612 1.01747 0.92819 1.25610 0.97099 0.99169 0.96885 1.70154 1.47779 1.13554 1.23099 0.85780 0.79344 0.77676 0.79744 1.20237 1.21526 1.20329 1.22745 0.90862 1.01194 1.08591 1.22581 1.00477 1.00591 0.98138 0.95344 0.90346 0.92702 0.90903 0.93050 0.89747 0.93379 0.91867 0.88839 0.92019 0.90161 0.93116 0.94074 0.96390 0.92209 0.93752 0.89989 0.92165 0.92697 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.36 127.69 1.19 1.95 16 2 N -0.56 -17.54 4.92 -923.46 -4.55 -22.09 16 3 C 0.06 1.43 4.85 86.10 0.42 1.85 16 4 C -0.10 -2.53 4.78 29.38 0.14 -2.39 16 5 C 0.05 1.37 3.71 44.64 0.17 1.54 16 6 H 0.09 2.52 8.05 -2.39 -0.02 2.50 16 7 C -0.14 -3.23 5.80 31.78 0.18 -3.04 16 8 C -0.12 -3.32 5.71 30.22 0.17 -3.15 16 9 C 0.03 1.22 1.62 43.21 0.07 1.29 16 10 H 0.06 2.32 3.63 -2.39 -0.01 2.31 16 11 C 0.10 3.78 5.98 84.79 0.51 4.29 16 12 N -0.48 -17.86 4.52 -842.03 -3.81 -21.66 16 13 C 0.10 4.11 4.70 86.30 0.41 4.51 16 14 C 0.02 1.20 1.72 -52.93 -0.09 1.11 16 15 C -0.45 -25.01 8.87 25.60 0.23 -24.78 16 16 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 17 C 0.01 0.55 5.27 84.65 0.45 1.00 16 18 N -0.91 -51.78 8.59 21.45 0.18 -51.60 16 19 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 23 C -0.20 -9.82 9.38 30.62 0.29 -9.53 16 24 C -0.18 -8.90 7.50 30.62 0.23 -8.67 16 25 H 0.03 0.64 8.09 -2.39 -0.02 0.62 16 26 H 0.08 1.69 7.90 -2.39 -0.02 1.67 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.55 7.50 -2.39 -0.02 1.54 16 29 H 0.05 1.25 3.52 -2.39 -0.01 1.24 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.76 7.05 -2.39 -0.02 1.74 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.92 6.86 -2.39 -0.02 1.91 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.34 7.87 -2.38 -0.02 1.32 16 38 H 0.02 0.70 7.89 -2.39 -0.02 0.68 16 39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.08 4.62 6.28 -2.39 -0.01 4.61 16 42 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.05 2.46 7.53 -2.39 -0.02 2.45 16 44 H 0.08 4.41 6.29 -2.38 -0.01 4.40 16 Total: -1.00 -60.52 317.84 -0.83 -61.35 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.96 Total: 20.62 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 4.36 Total: -34.03 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -8.17 Total: -95.36 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -60.52 -0.83 -61.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394359081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.142 kcal (2) G-P(sol) polarization free energy of solvation -60.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds