Wall clock time and date at job start Mon Mar 30 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86808 * 119.99816 * 2 1 4 4 H 1.48497 * 109.46749 * 269.99414 * 3 2 1 5 5 H 1.48500 * 109.47206 * 29.99344 * 3 2 1 6 6 H 1.48501 * 109.46822 * 149.99705 * 3 2 1 7 7 C 1.39958 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.41097 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.40608 * 119.70529 * 179.97438 * 9 7 2 11 11 C 1.38544 * 119.11310 * 179.97438 * 10 9 7 12 12 O 1.35868 * 120.73632 * 179.97438 * 11 10 9 13 13 C 1.42894 * 117.00372 * 0.02562 * 12 11 10 14 14 F 1.39902 * 109.46992 * 60.00062 * 13 12 11 15 15 F 1.39903 * 109.47147 * 180.02562 * 13 12 11 16 16 F 1.39897 * 109.47228 * 300.00134 * 13 12 11 17 17 C 1.39864 * 118.51979 * 359.97438 * 11 10 9 18 18 O 1.35794 * 120.33435 * 179.97438 * 17 11 10 19 19 C 1.39982 * 119.33163 * 0.02562 * 17 11 10 20 20 O 1.35667 * 119.58319 * 180.02562 * 19 17 11 21 21 N 1.31764 * 120.83801 * 359.97438 * 19 17 11 22 22 H 0.97006 * 119.99792 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.44552 * 359.97438 * 10 9 7 24 24 H 0.96701 * 114.00179 * 270.02242 * 18 17 11 25 25 H 0.96709 * 114.00016 * 269.97632 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4394 2.6528 0.6999 6 1 3.5395 1.4403 0.7001 7 6 2.0078 -1.2121 0.0005 8 1 3.0878 -1.2121 0.0010 9 6 1.3023 -2.4340 0.0005 10 6 2.0116 -3.6481 0.0005 11 6 1.3066 -4.8407 0.0011 12 8 1.9585 -6.0328 0.0006 13 6 3.3868 -5.9912 0.0000 14 9 3.8342 -5.3186 1.1423 15 9 3.8914 -7.2960 -0.0010 16 9 3.8333 -5.3181 -1.1422 17 6 -0.0911 -4.7902 0.0022 18 8 -0.8189 -5.9366 0.0022 19 6 -0.7323 -3.5458 0.0021 20 8 -2.0879 -3.4908 0.0037 21 7 -0.0360 -2.4272 0.0016 22 1 -0.4850 0.8401 -0.0004 23 1 3.0916 -3.6509 0.0001 24 1 -1.0300 -6.2685 -0.8812 25 1 -2.4819 -3.4751 -0.8793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396147308.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:08 Heat of formation + Delta-G solvation = -268.260532 kcal Electronic energy + Delta-G solvation = -20423.616986 eV Core-core repulsion = 16373.236111 eV Total energy + Delta-G solvation = -4050.380875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.039 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.43633 -49.16586 -49.02086 -41.39215 -39.62246 -37.96390 -37.40572 -35.20771 -31.65420 -31.06130 -27.54610 -26.91801 -23.90610 -23.60592 -21.24847 -20.25620 -20.15941 -19.18782 -19.03383 -18.90595 -17.61499 -16.92487 -16.58930 -16.26776 -16.01571 -15.79565 -15.67639 -15.46971 -15.33775 -15.19424 -14.96525 -14.81062 -14.45889 -13.57504 -13.54731 -13.03178 -12.99670 -12.69347 -12.33535 -11.95235 -11.76094 -11.17089 -9.95663 -9.81159 -9.52471 -8.48114 -6.74248 0.44268 0.45592 0.62031 1.42965 1.50073 1.58338 1.79499 2.18570 2.54186 2.81187 2.96608 3.08430 3.54013 3.56560 4.01718 4.34845 4.48493 4.99141 5.08323 5.13030 5.32578 5.71199 6.02623 6.38839 6.61714 6.76373 7.17305 7.81958 8.25660 Molecular weight = 265.04amu Principal moments of inertia in cm(-1) A = 0.019516 B = 0.008055 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.350869 B = 3475.192407 C = 4730.044607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.021 3.979 3 Si 0.995 3.005 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.428 4.428 8 H 0.105 0.895 9 C 0.253 3.747 10 C -0.347 4.347 11 C 0.153 3.847 12 O -0.313 6.313 13 C 0.607 3.393 14 F -0.168 7.168 15 F -0.127 7.127 16 F -0.165 7.165 17 C -0.132 4.132 18 O -0.480 6.480 19 C 0.341 3.659 20 O -0.485 6.485 21 N -0.521 5.521 22 H 0.287 0.713 23 H 0.130 0.870 24 H 0.376 0.624 25 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 -4.464 -3.393 7.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.204 4.204 3 Si 0.814 3.186 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.457 4.457 8 H 0.123 0.877 9 C 0.131 3.869 10 C -0.370 4.370 11 C 0.105 3.895 12 O -0.232 6.232 13 C 0.516 3.484 14 F -0.150 7.150 15 F -0.108 7.108 16 F -0.147 7.147 17 C -0.184 4.184 18 O -0.286 6.286 19 C 0.151 3.849 20 O -0.294 6.294 21 N -0.248 5.248 22 H 0.098 0.902 23 H 0.148 0.852 24 H 0.230 0.770 25 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.650 -3.716 -2.168 5.642 hybrid contribution 0.725 -0.402 -0.968 1.275 sum 4.375 -4.118 -3.136 6.778 Atomic orbital electron populations 1.70229 1.09079 1.30201 1.25789 1.27147 0.95815 1.04979 0.92480 0.85003 0.78972 0.74815 0.79833 1.18207 1.19235 1.17557 1.20154 0.95610 0.89718 1.40200 0.87742 1.18410 0.86775 0.92683 0.89035 1.22060 1.00138 0.91668 1.23100 1.19095 0.90793 0.81924 0.97710 1.86319 1.16166 1.31641 1.89057 1.19294 0.79748 0.74590 0.74762 1.93287 1.89479 1.80565 1.51630 1.93285 1.85593 1.35610 1.96344 1.93287 1.89495 1.80489 1.51385 1.18243 0.85496 0.86927 1.27731 1.84893 1.72433 1.38079 1.33231 1.19697 0.84890 0.86912 0.93413 1.84675 1.14181 1.95916 1.34616 1.68320 1.08270 1.26819 1.21343 0.90157 0.85225 0.77013 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.81 11.44 21.83 0.25 -36.56 15 2 C 0.02 0.96 5.50 85.26 0.47 1.43 15 3 Si 0.99 34.52 29.56 68.60 2.03 36.55 15 4 H -0.26 -8.55 7.11 99.48 0.71 -7.85 15 5 H -0.27 -8.99 7.11 99.48 0.71 -8.28 15 6 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 7 C -0.43 -21.38 9.12 23.39 0.21 -21.17 15 8 H 0.10 4.77 7.85 -2.91 -0.02 4.75 15 9 C 0.25 13.34 6.55 40.12 0.26 13.60 15 10 C -0.35 -16.45 8.04 22.92 0.18 -16.26 15 11 C 0.15 6.93 6.53 22.74 0.15 7.08 15 12 O -0.31 -12.41 10.21 -79.60 -0.81 -13.22 15 13 C 0.61 20.56 3.42 113.37 0.39 20.95 15 14 F -0.17 -5.88 15.61 44.97 0.70 -5.18 15 15 F -0.13 -3.67 17.53 44.97 0.79 -2.89 15 16 F -0.16 -5.54 15.61 44.97 0.70 -4.84 15 17 C -0.13 -6.04 6.80 23.09 0.16 -5.88 15 18 O -0.48 -19.10 13.12 -67.78 -0.89 -19.99 15 19 C 0.34 16.54 7.76 85.13 0.66 17.20 15 20 O -0.49 -20.49 13.35 -76.02 -1.01 -21.51 15 21 N -0.52 -28.03 7.86 -302.15 -2.37 -30.40 15 22 H 0.29 12.92 8.30 -92.70 -0.77 12.15 15 23 H 0.13 5.71 5.25 -2.91 -0.02 5.69 15 24 H 0.38 10.94 9.06 -74.06 -0.67 10.27 15 25 H 0.41 12.38 9.06 -74.05 -0.67 11.71 15 Total: -1.00 -62.20 248.84 1.83 -60.37 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -0.03 Total: 20.73 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 2.48 Total: 16.94 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -2.12 Total: -66.97 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -2.72 Total: -54.72 kcal Atomic # 9 Polarization: -15.09 SS G_CDS: 2.19 Total: -12.90 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Total: -62.20 1.83 -60.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396147308.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.892 kcal (2) G-P(sol) polarization free energy of solvation -62.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds