Wall clock time and date at job start Mon Mar 30 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30988 * 1 3 3 Si 1.86799 * 119.99334 * 2 1 4 4 H 1.48503 * 109.47251 * 240.00094 * 3 2 1 5 5 H 1.48501 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47017 * 119.99878 * 3 2 1 7 7 C 1.39837 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 159.12889 * 7 2 1 9 9 C 1.40921 * 120.00182 * 339.12991 * 7 2 1 10 10 C 1.41773 * 120.67901 * 322.39741 * 9 7 2 11 11 O 1.35587 * 120.89646 * 359.96182 * 10 9 7 12 12 C 1.38445 * 118.20392 * 179.97438 * 10 9 7 13 13 C 1.39049 * 119.45601 * 0.25406 * 12 10 9 14 14 O 1.35513 * 119.31917 * 179.74305 * 13 12 10 15 15 N 1.32620 * 121.35404 * 359.47412 * 13 12 10 16 16 C 1.32014 * 121.98085 * 0.53908 * 15 13 12 17 17 O 1.35416 * 119.81826 * 179.75141 * 16 15 13 18 18 C 1.42903 * 117.00590 * 359.97438 * 17 16 15 19 19 F 1.39898 * 109.46687 * 59.99856 * 18 17 16 20 20 F 1.39896 * 109.47029 * 179.97438 * 18 17 16 21 21 F 1.39895 * 109.46806 * 300.00051 * 18 17 16 22 22 H 0.96994 * 120.00674 * 359.97438 * 1 2 3 23 23 H 0.96706 * 113.99583 * 264.69216 * 11 10 9 24 24 H 1.07996 * 120.27199 * 179.97438 * 12 10 9 25 25 H 0.96701 * 113.99799 * 90.00834 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2437 1.6178 0.0000 4 1 3.0974 1.6966 -1.2125 5 1 1.2786 2.7465 0.0006 6 1 3.0974 1.6966 1.2125 7 6 2.0091 -1.2110 -0.0005 8 1 3.0360 -1.2415 -0.3338 9 6 1.3739 -2.3916 0.4337 10 6 0.4683 -2.3667 1.5241 11 8 0.1929 -1.2091 2.1742 12 6 -0.1272 -3.5563 1.9075 13 6 0.1812 -4.7269 1.2233 14 8 -0.3992 -5.8907 1.6042 15 7 1.0277 -4.7269 0.2023 16 6 1.6265 -3.6248 -0.2094 17 8 2.4871 -3.6759 -1.2537 18 6 2.6979 -4.9532 -1.8589 19 9 1.4826 -5.4432 -2.3489 20 9 3.6078 -4.8249 -2.9137 21 9 3.2090 -5.8416 -0.9068 22 1 -0.4851 0.8399 0.0004 23 1 0.7267 -1.0673 2.9680 24 1 -0.8220 -3.5758 2.7340 25 1 -1.2355 -6.0781 1.1563 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396152857.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:45 Heat of formation + Delta-G solvation = -245.612375 kcal Electronic energy + Delta-G solvation = -20649.501894 eV Core-core repulsion = 16600.103117 eV Total energy + Delta-G solvation = -4049.398777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.039 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.52992 -47.35010 -47.11057 -39.55240 -37.63635 -36.86397 -34.70291 -33.73406 -30.25034 -29.34647 -25.71847 -24.74469 -21.99851 -21.88572 -19.22460 -18.49078 -18.30246 -17.78466 -17.57318 -16.26841 -15.67199 -15.17294 -14.97709 -14.45716 -14.19583 -14.10646 -13.89683 -13.64280 -13.56054 -13.33838 -13.32610 -13.06201 -12.68608 -12.37967 -11.78771 -11.34076 -11.17532 -10.91495 -10.80185 -10.43899 -9.59155 -9.35915 -8.69598 -8.23098 -7.59193 -7.00176 -4.60203 2.18567 2.33037 2.42043 2.98652 2.99515 3.02358 3.72387 3.79813 4.23061 4.60657 4.77447 4.80256 5.06162 5.39602 5.84492 6.07698 6.36956 6.77882 6.88972 7.04705 7.14943 7.59267 8.03912 8.22271 8.46073 8.47530 8.82443 8.96408 9.96655 Molecular weight = 265.04amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.009271 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.426031 B = 3019.294920 C = 4196.333038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.083 3.917 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.437 4.437 8 H 0.091 0.909 9 C 0.066 3.934 10 C 0.096 3.904 11 O -0.457 6.457 12 C -0.182 4.182 13 C 0.201 3.799 14 O -0.483 6.483 15 N -0.519 5.519 16 C 0.208 3.792 17 O -0.291 6.291 18 C 0.607 3.393 19 F -0.169 7.169 20 F -0.153 7.153 21 F -0.170 7.170 22 H 0.288 0.712 23 H 0.360 0.640 24 H 0.120 0.880 25 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -1.908 0.339 2.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.109 0.891 9 C 0.060 3.940 10 C 0.044 3.956 11 O -0.262 6.262 12 C -0.204 4.204 13 C 0.025 3.975 14 O -0.286 6.286 15 N -0.249 5.249 16 C 0.027 3.973 17 O -0.206 6.206 18 C 0.515 3.485 19 F -0.151 7.151 20 F -0.134 7.134 21 F -0.152 7.152 22 H 0.099 0.901 23 H 0.213 0.787 24 H 0.138 0.862 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.527 -2.368 -0.246 2.828 hybrid contribution 0.036 1.001 0.283 1.041 sum 1.563 -1.367 0.037 2.077 Atomic orbital electron populations 1.69740 1.07807 1.30373 1.28224 1.25831 0.94634 1.01197 0.92452 0.86267 0.80093 0.79737 0.80166 1.18869 1.20191 1.18631 1.19253 0.99510 0.90872 1.36838 0.89117 1.17719 0.93267 0.90495 0.92503 1.17891 0.99843 0.84236 0.93662 1.84929 1.62029 1.37587 1.41698 1.21756 1.03516 0.91834 1.03305 1.17497 0.99443 0.84965 0.95597 1.84816 1.40020 1.39107 1.64692 1.65890 1.12007 1.30238 1.16812 1.19012 0.97489 0.90594 0.90206 1.86505 1.62065 1.26093 1.45903 1.19329 0.74552 0.78721 0.75899 1.93239 1.45525 1.88217 1.88143 1.93206 1.67457 1.95830 1.56934 1.93245 1.87279 1.69801 1.64894 0.90138 0.78721 0.86236 0.77610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.03 11.22 55.54 0.62 -17.41 15 2 C 0.08 1.94 4.44 -17.31 -0.08 1.86 15 3 Si 0.91 17.39 29.61 -169.99 -5.03 12.36 15 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 5 H -0.28 -5.17 7.11 56.52 0.40 -4.77 15 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 7 C -0.44 -10.79 8.46 -37.97 -0.32 -11.11 15 8 H 0.09 2.19 7.91 -52.49 -0.41 1.78 15 9 C 0.07 1.66 5.40 -106.35 -0.57 1.08 15 10 C 0.10 2.24 6.23 -38.16 -0.24 2.00 15 11 O -0.46 -9.80 10.49 -18.46 -0.19 -9.99 15 12 C -0.18 -3.96 9.96 -39.20 -0.39 -4.35 15 13 C 0.20 4.55 7.73 -16.91 -0.13 4.42 15 14 O -0.48 -9.50 13.54 -18.23 -0.25 -9.74 15 15 N -0.52 -12.59 8.08 -12.77 -0.10 -12.70 15 16 C 0.21 5.19 7.23 -16.29 -0.12 5.07 15 17 O -0.29 -6.83 9.80 -17.94 -0.18 -7.01 15 18 C 0.61 12.48 3.50 101.05 0.35 12.83 15 19 F -0.17 -3.52 16.55 2.25 0.04 -3.48 15 20 F -0.15 -2.77 17.53 2.25 0.04 -2.73 15 21 F -0.17 -3.51 16.55 2.25 0.04 -3.48 15 22 H 0.29 6.42 8.30 -40.82 -0.34 6.09 15 23 H 0.36 6.00 9.06 45.56 0.41 6.41 15 24 H 0.12 2.30 8.06 -52.49 -0.42 1.87 15 25 H 0.37 5.51 9.06 45.56 0.41 5.92 15 LS Contribution 250.03 15.07 3.77 3.77 Total: -1.00 -28.53 250.03 -1.89 -30.42 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.85 Total: 8.19 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -1.50 Total: 11.79 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.52 Total: -30.10 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.62 Total: -26.74 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 0.11 Total: -9.68 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.53 -1.89 -30.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396152857.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.191 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds