Wall clock time and date at job start Mon Mar 30 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99677 * 2 1 4 4 H 1.48504 * 109.46968 * 269.99685 * 3 2 1 5 5 H 1.48495 * 109.47512 * 29.99942 * 3 2 1 6 6 H 1.48504 * 109.46960 * 149.99804 * 3 2 1 7 7 C 1.37869 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99977 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00039 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.47117 * 180.02562 * 9 7 2 11 11 C 1.38257 * 120.00034 * 264.99968 * 10 9 7 12 12 C 1.38208 * 120.00031 * 180.02562 * 11 10 9 13 13 C 1.38256 * 120.00003 * 359.97438 * 12 11 10 14 14 C 1.38214 * 120.00239 * 0.25761 * 13 12 11 15 15 N 1.48013 * 120.00149 * 179.72171 * 14 13 12 16 16 O 1.21798 * 120.00485 * 6.55235 * 15 14 13 17 17 O 1.21799 * 120.00027 * 186.54484 * 15 14 13 18 18 C 1.38217 * 120.00027 * 84.97678 * 10 9 7 19 19 C 1.50701 * 119.99868 * 359.97438 * 18 10 9 20 20 C 1.50702 * 109.46953 * 95.73812 * 19 18 10 21 21 O 1.20818 * 120.00053 * 359.97438 * 20 19 18 22 22 O 1.34230 * 119.99529 * 180.02562 * 20 19 18 23 23 H 0.97000 * 119.99694 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47443 * 60.00334 * 9 7 2 25 25 H 1.09000 * 109.46911 * 299.99861 * 9 7 2 26 26 H 1.07998 * 119.99559 * 359.97438 * 11 10 9 27 27 H 1.08003 * 120.00310 * 179.97438 * 12 11 10 28 28 H 1.08010 * 119.99897 * 179.97438 * 13 12 11 29 29 H 1.09005 * 109.47071 * 215.73843 * 19 18 10 30 30 H 1.08998 * 109.47042 * 335.73716 * 19 18 10 31 31 H 0.96700 * 116.99634 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 6 4.3423 -3.2320 1.1938 12 6 4.8035 -4.5349 1.1936 13 6 4.9360 -5.2212 0.0007 14 6 4.6123 -4.6026 -1.1921 15 7 4.7600 -5.3352 -2.4697 16 8 5.0515 -6.5178 -2.4635 17 8 4.5900 -4.7556 -3.5273 18 6 4.1460 -3.3010 -1.1915 19 6 3.7870 -2.6286 -2.4915 20 6 5.0301 -2.0525 -3.1191 21 8 6.0979 -2.1750 -2.5671 22 8 4.9509 -1.4025 -4.2908 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 4.2392 -2.6958 2.1255 27 1 5.0604 -5.0170 2.1253 28 1 5.2968 -6.2392 0.0006 29 1 3.3435 -3.3591 -3.1681 30 1 3.0717 -1.8284 -2.3013 31 1 5.7751 -1.0508 -4.6543 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514274628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:16 Heat of formation + Delta-G solvation = -73.717025 kcal Electronic energy + Delta-G solvation = -20261.873772 eV Core-core repulsion = 16897.618772 eV Total energy + Delta-G solvation = -3364.255000 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.07315 -40.18054 -39.10189 -36.46755 -35.84573 -34.11814 -32.82960 -32.03191 -29.11916 -27.71682 -26.00091 -23.48422 -22.54466 -21.42869 -20.30520 -18.41451 -18.28698 -17.95598 -17.34867 -17.04437 -16.23638 -16.11310 -15.77964 -14.96024 -14.56018 -13.94358 -13.36377 -13.01297 -12.58890 -12.52197 -12.47751 -12.19665 -11.92544 -11.49359 -11.30907 -11.17028 -10.96594 -10.72030 -10.59580 -10.39004 -10.32803 -10.24106 -9.68266 -9.18377 -8.82279 -8.50761 -6.31422 -4.35150 0.13910 1.25180 1.66710 1.70237 2.52774 3.12807 3.21887 3.23188 3.25277 3.75304 4.20109 4.52242 4.65988 4.95170 5.03404 5.15507 5.22601 5.35583 5.57281 5.64045 5.92051 5.99686 6.05305 6.29556 6.31520 6.51564 6.65361 6.71199 6.87622 6.98073 7.36254 7.90313 8.14037 8.19453 8.70351 9.26516 10.80258 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.007736 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.502160 B = 3618.775261 C = 4332.167263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.871 3.129 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.014 3.986 10 C -0.017 4.017 11 C -0.069 4.069 12 C -0.115 4.115 13 C -0.079 4.079 14 C -0.031 4.031 15 N 0.040 4.960 16 O -0.170 6.170 17 O -0.177 6.177 18 C -0.009 4.009 19 C -0.100 4.100 20 C 0.503 3.497 21 O -0.525 6.525 22 O -0.510 6.510 23 H 0.268 0.732 24 H 0.039 0.961 25 H 0.027 0.973 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 -5.082 -1.137 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.698 3.302 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.096 0.904 9 C -0.023 4.023 10 C -0.018 4.018 11 C -0.087 4.087 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.114 4.114 15 N 0.555 4.445 16 O -0.386 6.386 17 O -0.388 6.388 18 C -0.010 4.010 19 C -0.137 4.137 20 C 0.346 3.654 21 O -0.414 6.414 22 O -0.321 6.321 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.160 0.840 27 H 0.160 0.840 28 H 0.164 0.836 29 H 0.153 0.847 30 H 0.164 0.836 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 8.738 -4.799 -0.247 9.972 hybrid contribution 0.893 0.874 -0.534 1.359 sum 9.631 -3.925 -0.781 10.429 Atomic orbital electron populations 1.69874 1.06230 1.27455 1.48861 1.24948 0.94726 0.98977 0.93911 0.86899 0.80472 0.83760 0.79090 1.19752 1.20830 1.18860 1.20790 0.87377 0.95007 1.53401 0.90435 1.18917 0.98013 0.87001 0.98377 1.20253 0.92703 0.98557 0.90249 1.21552 0.94036 0.94307 0.98816 1.21128 1.00331 0.94787 0.97166 1.20808 0.98216 1.00886 0.89935 1.20880 1.13121 0.94039 0.83375 1.43623 0.97098 1.00818 1.02958 1.94477 1.50448 0.99322 1.94305 1.94432 1.54193 1.69815 1.20368 1.18975 0.95797 0.90262 0.96002 1.20717 0.95439 1.04135 0.93370 1.22982 0.90574 0.73845 0.77976 1.90678 1.31241 1.56711 1.62782 1.84537 1.42604 1.67757 1.37195 0.92159 0.94274 0.95460 0.83991 0.84046 0.83610 0.84692 0.83632 0.73595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.96 55.43 0.77 -24.26 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 7 C -0.53 -13.27 8.93 -34.44 -0.31 -13.58 16 8 H 0.08 2.13 7.98 -52.49 -0.42 1.72 16 9 C 0.01 0.30 3.48 -29.03 -0.10 0.20 16 10 C -0.02 -0.32 5.07 -104.62 -0.53 -0.85 16 11 C -0.07 -1.07 9.68 -39.59 -0.38 -1.46 16 12 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 13 C -0.08 -1.16 9.56 -39.58 -0.38 -1.54 16 14 C -0.03 -0.54 6.83 -79.95 -0.55 -1.09 16 15 N 0.04 0.73 4.45 33.96 0.15 0.88 16 16 O -0.17 -3.02 18.47 -29.46 -0.54 -3.56 16 17 O -0.18 -3.28 14.43 -29.46 -0.43 -3.71 16 18 C -0.01 -0.16 4.37 -104.62 -0.46 -0.62 16 19 C -0.10 -1.81 4.58 -29.03 -0.13 -1.94 16 20 C 0.50 8.87 7.08 36.01 0.25 9.13 16 21 O -0.53 -10.39 16.79 -18.74 -0.31 -10.71 16 22 O -0.51 -7.33 13.42 -39.26 -0.53 -7.86 16 23 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.04 0.81 7.11 -51.93 -0.37 0.44 16 25 H 0.03 0.58 6.26 -51.93 -0.32 0.26 16 26 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 27 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.15 1.78 7.63 -52.48 -0.40 1.38 16 29 H 0.14 2.32 5.82 -51.93 -0.30 2.02 16 30 H 0.15 2.78 5.90 -51.93 -0.31 2.47 16 31 H 0.41 3.83 9.10 45.56 0.41 4.24 16 LS Contribution 279.06 15.07 4.21 4.21 Total: -1.00 -30.86 279.06 -6.15 -37.01 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -1.72 Total: 4.74 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -3.08 Total: -11.70 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.92 Total: -23.38 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.81 Total: -25.83 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.86 -6.15 -37.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514274628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.709 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds