Wall clock time and date at job start Mon Mar 30 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.50097 * 111.00368 * 2 1 4 4 C 1.51618 * 101.49935 * 148.31474 * 3 2 1 5 5 H 1.09005 * 112.28618 * 70.31327 * 4 3 2 6 6 C 1.51380 * 122.94947 * 208.15072 * 4 3 2 7 7 N 1.50103 * 102.37029 * 150.26626 * 6 4 3 8 8 C 1.46899 * 111.00266 * 212.55144 * 7 6 4 9 9 C 1.53003 * 109.47374 * 282.42957 * 8 7 6 10 10 C 1.50696 * 115.54737 * 280.49613 * 9 8 7 11 11 H 1.07998 * 120.00205 * 118.68395 * 10 9 8 12 12 C 1.37876 * 120.00126 * 298.68354 * 10 9 8 13 13 N 1.31519 * 119.99996 * 159.45769 * 12 10 9 14 14 Si 1.86799 * 120.00043 * 339.46397 * 12 10 9 15 15 H 1.48498 * 109.47094 * 84.33267 * 14 12 10 16 16 H 1.48498 * 109.47302 * 204.33547 * 14 12 10 17 17 H 1.48501 * 109.46899 * 324.33164 * 14 12 10 18 18 C 1.52991 * 117.50000 * 134.78751 * 9 8 7 19 19 C 1.53001 * 117.49789 * 66.16278 * 9 8 7 20 20 C 1.49770 * 107.62486 * 334.20178 * 7 6 4 21 21 C 1.49469 * 104.56514 * 353.23874 * 20 7 6 22 22 C 1.53004 * 108.56694 * 282.21980 * 21 20 7 23 23 C 1.49482 * 129.10365 * 147.31812 * 21 20 7 24 24 H 1.09001 * 109.46995 * 300.35355 * 1 2 3 25 25 H 1.08997 * 109.47161 * 60.34716 * 1 2 3 26 26 H 1.08999 * 109.47552 * 180.34964 * 1 2 3 27 27 H 1.09003 * 110.82643 * 265.67112 * 3 2 1 28 28 H 1.09004 * 110.82811 * 29.02481 * 3 2 1 29 29 H 1.08996 * 110.82465 * 32.04593 * 6 4 3 30 30 H 1.09002 * 110.82870 * 268.48856 * 6 4 3 31 31 H 1.09006 * 109.46793 * 42.42783 * 8 7 6 32 32 H 1.08995 * 109.47557 * 162.42418 * 8 7 6 33 33 H 0.97001 * 119.99854 * 179.97438 * 13 12 10 34 34 H 1.08999 * 117.49934 * 359.97438 * 18 9 8 35 35 H 1.09005 * 117.50244 * 145.02454 * 18 9 8 36 36 H 1.09001 * 117.49367 * 214.98091 * 19 9 8 37 37 H 1.08993 * 117.49918 * 0.02562 * 19 9 8 38 38 H 1.09002 * 110.42227 * 112.00953 * 20 7 6 39 39 H 1.09005 * 110.41816 * 234.34638 * 20 7 6 40 40 H 1.09000 * 109.47215 * 60.37649 * 22 21 20 41 41 H 1.09002 * 109.47183 * 180.37454 * 22 21 20 42 42 H 1.08999 * 109.46967 * 300.37113 * 22 21 20 43 43 H 1.08993 * 110.41617 * 330.25704 * 23 21 20 44 44 H 1.09005 * 110.41339 * 92.59560 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0070 1.4012 0.0000 4 6 3.2956 1.2303 0.7804 5 1 4.0471 0.6734 0.2206 6 6 3.9176 2.3430 1.5969 7 7 4.6196 1.5877 2.6877 8 6 4.6249 2.3552 3.9402 9 6 5.6919 3.4491 3.8636 10 6 7.1068 2.9956 4.1157 11 1 7.8544 3.1046 3.3440 12 6 7.4469 2.4416 5.3316 13 7 8.5220 1.6912 5.4346 14 14 6.3805 2.7567 6.8326 15 1 5.2542 1.7891 6.8516 16 1 7.1959 2.5916 8.0626 17 1 5.8437 4.1402 6.7767 18 6 5.3031 4.8499 4.3402 19 6 5.4806 4.5720 2.8461 20 6 3.9106 0.2800 2.8625 21 6 2.7088 0.3831 1.9798 22 6 1.6597 1.2459 2.6839 23 6 2.0057 -0.6918 1.2152 24 1 -0.3633 0.5193 0.8868 25 1 -0.3633 0.5084 -0.8931 26 1 -0.3634 -1.0276 0.0063 27 1 2.2177 1.7355 -1.0159 28 1 1.3143 2.0824 0.4943 29 1 3.1492 2.9962 2.0104 30 1 4.6298 2.9112 0.9986 31 1 3.6466 2.8118 4.0906 32 1 4.8468 1.6889 4.7737 33 1 8.7615 1.3017 6.2901 34 1 4.2869 4.9924 4.7079 35 1 6.0706 5.4439 4.8364 36 1 6.3651 4.9831 2.3595 37 1 4.5813 4.5318 2.2317 38 1 4.5481 -0.5440 2.5421 39 1 3.6109 0.1459 3.9019 40 1 2.0682 2.2405 2.8633 41 1 0.7730 1.3254 2.0550 42 1 1.3905 0.7867 3.6351 43 1 2.7071 -1.4752 0.9281 44 1 1.1918 -1.1097 1.8077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702477810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:41 Heat of formation + Delta-G solvation = 83.884816 kcal Electronic energy + Delta-G solvation = -21674.740359 eV Core-core repulsion = 18822.537433 eV Total energy + Delta-G solvation = -2852.202926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38338 -37.53527 -35.65626 -32.06654 -31.61697 -30.72673 -27.79387 -27.36430 -26.36720 -25.53433 -23.53908 -21.50134 -21.29300 -20.03976 -18.95388 -18.79422 -16.43284 -16.07656 -15.59927 -15.28282 -14.84657 -14.77896 -13.94389 -13.79100 -13.53756 -13.31926 -12.88259 -12.60747 -12.40245 -12.32639 -12.01848 -11.70002 -11.67673 -11.43049 -11.37494 -11.24143 -11.03658 -10.90990 -10.44743 -10.40606 -10.21306 -10.08093 -9.82849 -9.42312 -9.05290 -8.59151 -8.49915 -8.17965 -7.59734 -6.05548 -3.94178 3.29032 3.41029 3.49142 3.80004 3.96516 4.26845 4.49263 4.70241 4.92662 5.07412 5.10398 5.11416 5.22488 5.23748 5.34153 5.43095 5.44340 5.60314 5.63616 5.66618 5.74470 5.76813 5.86475 5.91245 5.93731 6.02232 6.10789 6.19877 6.22006 6.24007 6.31237 6.41764 6.47181 6.53838 6.61435 6.65145 6.80785 6.89226 7.18706 7.22022 7.42721 7.75106 7.90025 8.62854 9.04713 9.63082 11.07098 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.030566 B = 0.005806 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.830907 B = 4821.084893 C = 5057.688227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.528 5.528 3 C 0.053 3.947 4 C -0.116 4.116 5 H 0.099 0.901 6 C 0.056 3.944 7 N -0.492 5.492 8 C 0.086 3.914 9 C 0.019 3.981 10 C -0.471 4.471 11 H 0.074 0.926 12 C 0.082 3.918 13 N -0.887 5.887 14 Si 0.859 3.141 15 H -0.280 1.280 16 H -0.293 1.293 17 H -0.257 1.257 18 C -0.206 4.206 19 C -0.183 4.183 20 C 0.068 3.932 21 C -0.130 4.130 22 C -0.162 4.162 23 C 0.070 3.930 24 H 0.027 0.973 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 -1.942 -7.698 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.252 5.252 3 C -0.074 4.074 4 C -0.135 4.135 5 H 0.117 0.883 6 C -0.071 4.071 7 N -0.215 5.215 8 C -0.042 4.042 9 C 0.017 3.983 10 C -0.508 4.508 11 H 0.092 0.908 12 C -0.120 4.120 13 N -0.523 5.523 14 Si 0.686 3.314 15 H -0.206 1.206 16 H -0.220 1.220 17 H -0.181 1.181 18 C -0.244 4.244 19 C -0.221 4.221 20 C -0.060 4.060 21 C -0.132 4.132 22 C -0.219 4.219 23 C -0.058 4.058 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.028 0.972 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.250 -2.412 -8.153 17.460 hybrid contribution -1.731 0.719 1.996 2.739 sum -16.981 -1.693 -6.157 18.142 Atomic orbital electron populations 1.22576 0.88475 1.01822 1.00499 1.65272 1.07565 1.14287 1.38076 1.22602 0.94990 0.89388 1.00450 1.22845 0.96641 0.98493 0.95560 0.88281 1.22722 0.96346 0.94642 0.93391 1.65122 1.48243 1.01864 1.06232 1.22191 0.95023 0.95945 0.91036 1.19287 0.95618 0.84844 0.98516 1.20128 0.91387 1.39346 0.99895 0.90816 1.24840 0.94935 0.93552 0.98712 1.70040 1.27341 1.29819 1.25135 0.87175 0.80797 0.80206 0.83186 1.20605 1.21971 1.18066 1.23155 0.99659 1.04659 0.96948 1.22807 1.00943 1.06916 0.91398 1.21943 0.91827 0.94640 0.97560 1.21915 0.96463 0.97921 0.96933 1.22503 0.98376 1.00879 1.00102 1.21869 0.98514 0.95859 0.89528 0.95434 0.91499 0.91483 0.90149 0.92673 0.93388 0.89701 0.97233 0.91019 0.92818 0.91919 0.89667 0.90013 0.91037 0.90293 0.92482 0.91382 0.92754 0.92732 0.89966 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.09 60.07 0.55 0.69 16 2 N -0.53 -6.05 5.54 -240.53 -1.33 -7.38 16 3 C 0.05 0.61 6.02 -2.73 -0.02 0.60 16 4 C -0.12 -1.58 3.17 -89.31 -0.28 -1.86 16 5 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 6 C 0.06 0.89 4.08 -2.85 -0.01 0.88 16 7 N -0.49 -9.38 5.21 -232.41 -1.21 -10.59 16 8 C 0.09 1.82 4.27 -3.82 -0.02 1.80 16 9 C 0.02 0.43 1.02 -155.66 -0.16 0.28 16 10 C -0.47 -13.15 9.32 -34.44 -0.32 -13.47 16 11 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16 12 C 0.08 2.34 5.31 -17.82 -0.09 2.25 16 13 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 14 Si 0.86 21.28 25.65 -169.99 -4.36 16.92 16 15 H -0.28 -6.74 6.66 56.52 0.38 -6.37 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.26 -6.09 6.17 56.52 0.35 -5.74 16 18 C -0.21 -4.39 8.04 -26.73 -0.21 -4.60 16 19 C -0.18 -3.73 8.89 -26.73 -0.24 -3.96 16 20 C 0.07 1.12 6.07 -3.96 -0.02 1.09 16 21 C -0.13 -1.73 1.47 -155.16 -0.23 -1.96 16 22 C -0.16 -2.07 7.33 37.16 0.27 -1.80 16 23 C 0.07 0.82 6.04 -3.95 -0.02 0.80 16 24 H 0.03 0.26 6.23 -51.93 -0.32 -0.07 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.62 6.08 -51.93 -0.32 0.30 16 29 H 0.05 0.74 5.05 -51.93 -0.26 0.48 16 30 H 0.08 1.41 7.20 -51.93 -0.37 1.04 16 31 H 0.01 0.19 6.47 -51.93 -0.34 -0.15 16 32 H 0.07 1.67 5.38 -51.93 -0.28 1.39 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 34 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 35 H 0.08 1.88 8.10 -51.93 -0.42 1.46 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.07 1.28 5.84 -51.93 -0.30 0.98 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 0.95 7.25 -51.93 -0.38 0.57 16 40 H 0.07 0.96 4.12 -51.93 -0.21 0.75 16 41 H 0.05 0.63 4.08 -51.93 -0.21 0.42 16 42 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.64 7.50 -51.93 -0.39 0.25 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -29.33 313.23 -9.46 -38.79 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.24 Total: 2.96 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -0.81 Total: -19.27 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -1.77 Total: -44.12 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.36 Total: 16.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.33 -9.46 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702477810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.677 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds