Wall clock time and date at job start Mon Mar 30 2020 04:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.50097 * 111.00368 * 2 1 4 4 C 1.51618 * 101.49935 * 148.31474 * 3 2 1 5 5 H 1.09005 * 112.28618 * 70.31327 * 4 3 2 6 6 C 1.51380 * 122.94947 * 208.15072 * 4 3 2 7 7 N 1.50103 * 102.37029 * 150.26626 * 6 4 3 8 8 C 1.46899 * 111.00266 * 212.55144 * 7 6 4 9 9 C 1.53003 * 109.47374 * 282.42957 * 8 7 6 10 10 C 1.50696 * 115.54737 * 280.49613 * 9 8 7 11 11 H 1.07998 * 120.00205 * 118.68395 * 10 9 8 12 12 C 1.37876 * 120.00126 * 298.68354 * 10 9 8 13 13 N 1.31519 * 119.99996 * 159.45769 * 12 10 9 14 14 Si 1.86799 * 120.00043 * 339.46397 * 12 10 9 15 15 H 1.48498 * 109.47094 * 84.33267 * 14 12 10 16 16 H 1.48498 * 109.47302 * 204.33547 * 14 12 10 17 17 H 1.48501 * 109.46899 * 324.33164 * 14 12 10 18 18 C 1.52991 * 117.50000 * 134.78751 * 9 8 7 19 19 C 1.53001 * 117.49789 * 66.16278 * 9 8 7 20 20 C 1.49770 * 107.62486 * 334.20178 * 7 6 4 21 21 C 1.49469 * 104.56514 * 353.23874 * 20 7 6 22 22 C 1.53004 * 108.56694 * 282.21980 * 21 20 7 23 23 C 1.49482 * 129.10365 * 147.31812 * 21 20 7 24 24 H 1.09001 * 109.46995 * 300.35355 * 1 2 3 25 25 H 1.08997 * 109.47161 * 60.34716 * 1 2 3 26 26 H 1.08999 * 109.47552 * 180.34964 * 1 2 3 27 27 H 1.09003 * 110.82643 * 265.67112 * 3 2 1 28 28 H 1.09004 * 110.82811 * 29.02481 * 3 2 1 29 29 H 1.08996 * 110.82465 * 32.04593 * 6 4 3 30 30 H 1.09002 * 110.82870 * 268.48856 * 6 4 3 31 31 H 1.09006 * 109.46793 * 42.42783 * 8 7 6 32 32 H 1.08995 * 109.47557 * 162.42418 * 8 7 6 33 33 H 0.97001 * 119.99854 * 179.97438 * 13 12 10 34 34 H 1.08999 * 117.49934 * 359.97438 * 18 9 8 35 35 H 1.09005 * 117.50244 * 145.02454 * 18 9 8 36 36 H 1.09001 * 117.49367 * 214.98091 * 19 9 8 37 37 H 1.08993 * 117.49918 * 0.02562 * 19 9 8 38 38 H 1.09002 * 110.42227 * 112.00953 * 20 7 6 39 39 H 1.09005 * 110.41816 * 234.34638 * 20 7 6 40 40 H 1.09000 * 109.47215 * 60.37649 * 22 21 20 41 41 H 1.09002 * 109.47183 * 180.37454 * 22 21 20 42 42 H 1.08999 * 109.46967 * 300.37113 * 22 21 20 43 43 H 1.08993 * 110.41617 * 330.25704 * 23 21 20 44 44 H 1.09005 * 110.41339 * 92.59560 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0070 1.4012 0.0000 4 6 3.2956 1.2303 0.7804 5 1 4.0471 0.6734 0.2206 6 6 3.9176 2.3430 1.5969 7 7 4.6196 1.5877 2.6877 8 6 4.6249 2.3552 3.9402 9 6 5.6919 3.4491 3.8636 10 6 7.1068 2.9956 4.1157 11 1 7.8544 3.1046 3.3440 12 6 7.4469 2.4416 5.3316 13 7 8.5220 1.6912 5.4346 14 14 6.3805 2.7567 6.8326 15 1 5.2542 1.7891 6.8516 16 1 7.1959 2.5916 8.0626 17 1 5.8437 4.1402 6.7767 18 6 5.3031 4.8499 4.3402 19 6 5.4806 4.5720 2.8461 20 6 3.9106 0.2800 2.8625 21 6 2.7088 0.3831 1.9798 22 6 1.6597 1.2459 2.6839 23 6 2.0057 -0.6918 1.2152 24 1 -0.3633 0.5193 0.8868 25 1 -0.3633 0.5084 -0.8931 26 1 -0.3634 -1.0276 0.0063 27 1 2.2177 1.7355 -1.0159 28 1 1.3143 2.0824 0.4943 29 1 3.1492 2.9962 2.0104 30 1 4.6298 2.9112 0.9986 31 1 3.6466 2.8118 4.0906 32 1 4.8468 1.6889 4.7737 33 1 8.7615 1.3017 6.2901 34 1 4.2869 4.9924 4.7079 35 1 6.0706 5.4439 4.8364 36 1 6.3651 4.9831 2.3595 37 1 4.5813 4.5318 2.2317 38 1 4.5481 -0.5440 2.5421 39 1 3.6109 0.1459 3.9019 40 1 2.0682 2.2405 2.8633 41 1 0.7730 1.3254 2.0550 42 1 1.3905 0.7867 3.6351 43 1 2.7071 -1.4752 0.9281 44 1 1.1918 -1.1097 1.8077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702477810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:40 Heat of formation + Delta-G solvation = 62.684762 kcal Electronic energy + Delta-G solvation = -21675.659662 eV Core-core repulsion = 18822.537433 eV Total energy + Delta-G solvation = -2853.122229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.49105 -39.06602 -36.97690 -34.23053 -32.79464 -31.82155 -28.80773 -28.74492 -27.55298 -27.34864 -24.80235 -23.13437 -22.45986 -21.20975 -20.72887 -19.97113 -18.26788 -17.29941 -16.84456 -16.61802 -16.20441 -16.09344 -15.40182 -15.04035 -14.89610 -14.72213 -14.57172 -14.04203 -13.63255 -13.46705 -13.14677 -13.03068 -12.98360 -12.74858 -12.71493 -12.48684 -12.28464 -12.18354 -12.09713 -11.97942 -11.85278 -11.42466 -11.32597 -10.99669 -10.89006 -10.42417 -10.19809 -9.40372 -8.97034 -8.26208 -6.18553 1.32242 1.39622 1.52001 2.40823 2.83402 2.88040 2.93014 3.07497 3.52625 3.64989 3.98228 4.06260 4.16808 4.20143 4.26670 4.30676 4.39227 4.40756 4.47975 4.50824 4.53303 4.60485 4.64572 4.72734 4.75256 4.79156 4.89799 4.93317 4.95162 4.97182 5.06718 5.08006 5.12336 5.20432 5.21427 5.40072 5.48446 5.53463 5.77260 5.78876 6.05218 6.08849 6.27735 6.43096 6.81602 7.41754 8.90737 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.030566 B = 0.005806 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.830907 B = 4821.084893 C = 5057.688227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.537 5.537 3 C 0.061 3.939 4 C -0.110 4.110 5 H 0.081 0.919 6 C 0.061 3.939 7 N -0.524 5.524 8 C 0.099 3.901 9 C -0.011 4.011 10 C -0.473 4.473 11 H 0.022 0.978 12 C 0.028 3.972 13 N -0.940 5.940 14 Si 0.923 3.077 15 H -0.267 1.267 16 H -0.297 1.297 17 H -0.235 1.235 18 C -0.195 4.195 19 C -0.165 4.165 20 C 0.068 3.932 21 C -0.123 4.123 22 C -0.156 4.156 23 C 0.074 3.926 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.856 -1.176 -7.899 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.261 5.261 3 C -0.067 4.067 4 C -0.130 4.130 5 H 0.100 0.900 6 C -0.066 4.066 7 N -0.248 5.248 8 C -0.029 4.029 9 C -0.012 4.012 10 C -0.511 4.511 11 H 0.040 0.960 12 C -0.170 4.170 13 N -0.580 5.580 14 Si 0.747 3.253 15 H -0.192 1.192 16 H -0.224 1.224 17 H -0.158 1.158 18 C -0.233 4.233 19 C -0.202 4.202 20 C -0.060 4.060 21 C -0.125 4.125 22 C -0.212 4.212 23 C -0.054 4.054 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.069 -1.630 -8.376 20.891 hybrid contribution -0.453 0.454 1.937 2.041 sum -19.522 -1.176 -6.439 20.590 Atomic orbital electron populations 1.22647 0.86836 1.02710 1.01227 1.65267 1.09125 1.14045 1.37659 1.22577 0.93682 0.89808 1.00587 1.22708 0.97193 0.97364 0.95723 0.90033 1.22657 0.96210 0.95150 0.92607 1.64995 1.50524 1.03049 1.06250 1.21886 0.95074 0.94821 0.91145 1.19212 0.93661 0.86551 1.01789 1.20284 0.93164 1.39080 0.98544 0.95995 1.25643 0.96369 0.93191 1.01804 1.70181 1.30019 1.31879 1.25874 0.86147 0.79182 0.81330 0.78627 1.19240 1.22403 1.15771 1.23156 1.00829 1.01903 0.97410 1.22836 1.01763 1.04208 0.91436 1.21860 0.92966 0.93064 0.98071 1.21785 0.95649 0.98859 0.96171 1.22434 0.98467 0.99852 1.00460 1.21848 0.98712 0.95247 0.89603 0.94957 0.90440 0.90616 0.89363 0.91593 0.92002 0.90893 0.94861 0.93710 0.92855 0.88910 0.90817 0.91141 0.87928 0.91511 0.92883 0.92462 0.91020 0.92525 0.90611 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.09 127.69 1.16 1.37 16 2 N -0.54 -10.67 5.54 -914.90 -5.07 -15.73 16 3 C 0.06 1.22 6.02 85.22 0.51 1.73 16 4 C -0.11 -2.81 3.17 -9.95 -0.03 -2.85 16 5 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 6 C 0.06 1.82 4.08 85.15 0.35 2.17 16 7 N -0.52 -19.80 5.21 -889.21 -4.63 -24.43 16 8 C 0.10 4.07 4.27 86.30 0.37 4.43 16 9 C -0.01 -0.49 1.02 -52.93 -0.05 -0.55 16 10 C -0.47 -27.40 9.32 25.60 0.24 -27.16 16 11 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 12 C 0.03 1.63 5.31 84.65 0.45 2.08 16 13 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 14 Si 0.92 44.16 25.65 68.60 1.76 45.92 16 15 H -0.27 -12.17 6.66 99.48 0.66 -11.50 16 16 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 17 H -0.23 -10.30 6.17 99.48 0.61 -9.69 16 18 C -0.19 -7.79 8.04 30.59 0.25 -7.54 16 19 C -0.17 -6.44 8.89 30.60 0.27 -6.17 16 20 C 0.07 2.20 6.07 84.61 0.51 2.71 16 21 C -0.12 -3.02 1.47 -52.60 -0.08 -3.10 16 22 C -0.16 -3.46 7.33 71.98 0.53 -2.93 16 23 C 0.07 1.55 6.04 84.62 0.51 2.06 16 24 H 0.03 0.46 6.23 -2.39 -0.01 0.44 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.21 6.08 -2.39 -0.01 1.19 16 29 H 0.06 1.71 5.05 -2.39 -0.01 1.69 16 30 H 0.07 2.34 7.20 -2.39 -0.02 2.33 16 31 H 0.03 1.20 6.47 -2.38 -0.02 1.18 16 32 H 0.04 2.05 5.38 -2.39 -0.01 2.04 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.09 3.18 8.09 -2.39 -0.02 3.16 16 35 H 0.07 3.11 8.10 -2.38 -0.02 3.09 16 36 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.10 3.35 5.84 -2.39 -0.01 3.33 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.73 7.25 -2.38 -0.02 1.71 16 40 H 0.06 1.41 4.12 -2.39 -0.01 1.40 16 41 H 0.07 1.35 4.08 -2.39 -0.01 1.34 16 42 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 1.36 7.50 -2.38 -0.02 1.34 16 Total: -1.00 -65.74 313.23 -1.81 -67.55 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.84 Total: 19.73 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 4.99 Total: -33.74 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -9.40 Total: -99.48 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.76 Total: 45.92 kcal Total: -65.74 -1.81 -67.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702477810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.239 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds