Wall clock time and date at job start Mon Mar 30 2020 05:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99682 * 359.72372 * 7 2 1 10 10 O 1.42099 * 106.40365 * 293.53683 * 9 7 2 11 11 O 1.42097 * 106.40383 * 66.46366 * 9 7 2 12 12 N 1.65604 * 107.21290 * 180.02562 * 9 7 2 13 13 C 1.46493 * 120.00348 * 64.99980 * 12 9 7 14 14 C 1.53002 * 109.47299 * 164.99858 * 13 12 9 15 15 C 1.52996 * 109.47141 * 179.97438 * 14 13 12 16 16 H 1.08996 * 108.85524 * 305.70060 * 15 14 13 17 17 C 1.52945 * 108.88850 * 187.12272 * 15 14 13 18 18 C 1.54994 * 109.04557 * 208.99869 * 17 15 14 19 19 S 1.83989 * 100.82100 * 41.60816 * 18 17 15 20 20 C 1.53710 * 108.88542 * 64.27912 * 15 14 13 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 0.97005 * 119.99609 * 244.99619 * 12 9 7 23 23 H 1.09005 * 109.47185 * 284.99710 * 13 12 9 24 24 H 1.08998 * 109.46930 * 44.99721 * 13 12 9 25 25 H 1.08995 * 109.47013 * 300.00026 * 14 13 12 26 26 H 1.09007 * 109.47115 * 59.99788 * 14 13 12 27 27 H 1.09000 * 109.60006 * 329.04128 * 17 15 14 28 28 H 1.08994 * 109.59868 * 89.17871 * 17 15 14 29 29 H 1.09000 * 111.23255 * 283.70675 * 18 17 15 30 30 H 1.09001 * 111.14801 * 159.47684 * 18 17 15 31 31 H 1.08993 * 110.34336 * 242.48864 * 20 15 14 32 32 H 1.09004 * 110.34423 * 4.64267 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 0.0061 10 8 0.4566 -2.7929 1.2588 11 8 0.4462 -2.7978 -1.2406 12 7 2.2483 -3.9354 0.0045 13 6 3.1437 -4.1064 1.1513 14 6 3.8088 -5.4824 1.0784 15 6 4.7444 -5.6606 2.2758 16 1 5.4427 -4.8242 2.3048 17 6 5.5337 -6.9586 2.0984 18 6 5.8880 -7.5300 3.4949 19 16 4.3108 -7.2402 4.3970 20 6 3.9083 -5.6558 3.5656 21 1 -0.4850 0.8401 0.0004 22 1 2.3142 -4.5342 -0.7558 23 1 3.9098 -3.3312 1.1329 24 1 2.5701 -4.0285 2.0749 25 1 3.0428 -6.2576 1.0969 26 1 4.3823 -5.5603 0.1548 27 1 4.9305 -7.6812 1.5489 28 1 6.4508 -6.7561 1.5453 29 1 6.7089 -6.9767 3.9511 30 1 6.1182 -8.5939 3.4377 31 1 4.1912 -4.8139 4.1973 32 1 2.8454 -5.6101 3.3280 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704910838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:14 Heat of formation + Delta-G solvation = -113.130622 kcal Electronic energy + Delta-G solvation = -16245.895985 eV Core-core repulsion = 13458.128705 eV Total energy + Delta-G solvation = -2787.767280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.059 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -37.82110 -35.22001 -34.40095 -33.94141 -33.07288 -30.67865 -27.74929 -26.13461 -25.07827 -21.97018 -20.21683 -18.92961 -17.47356 -16.84415 -16.23578 -15.81510 -15.34334 -14.92134 -14.51084 -14.08170 -13.87882 -13.57892 -13.30638 -12.88357 -12.22121 -12.02306 -11.96154 -11.68552 -11.47049 -11.24721 -11.20917 -10.96857 -10.78643 -10.62515 -10.28496 -10.22982 -10.18301 -9.94632 -9.24306 -9.02453 -8.49128 -7.80570 -6.70254 -5.32501 1.75379 2.23495 2.34689 3.07624 3.12396 3.17650 4.05126 4.31144 4.42412 4.64181 4.66553 4.80506 4.93814 4.96182 5.22827 5.31858 5.38530 5.47204 5.54562 5.63783 5.75827 5.80362 5.86252 6.00163 6.22125 6.29529 6.52070 6.83683 7.31671 7.89425 7.97009 8.88471 10.23976 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.004715 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.311691 B = 5936.668157 C = 6214.791210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.716 3.284 10 O -1.008 7.008 11 O -1.007 7.007 12 N -1.138 6.138 13 C 0.123 3.877 14 C -0.120 4.120 15 C -0.095 4.095 16 H 0.085 0.915 17 C -0.120 4.120 18 C -0.068 4.068 19 S -0.309 6.309 20 C -0.066 4.066 21 H 0.291 0.709 22 H 0.401 0.599 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 -10.689 4.112 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.815 3.185 10 O -0.997 6.997 11 O -0.998 6.998 12 N -0.893 5.893 13 C -0.004 4.004 14 C -0.159 4.159 15 C -0.116 4.116 16 H 0.103 0.897 17 C -0.159 4.159 18 C -0.216 4.216 19 S -0.083 6.083 20 C -0.214 4.214 21 H 0.102 0.898 22 H 0.232 0.768 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.973 -11.255 5.164 16.545 hybrid contribution 1.642 1.670 -1.153 2.610 sum 12.614 -9.585 4.010 16.343 Atomic orbital electron populations 1.69890 1.06778 1.30826 1.39965 1.24746 0.94460 1.00803 0.88527 0.86205 0.79887 0.79761 0.79710 1.18903 1.20105 1.18896 1.30527 1.06001 1.11969 1.67010 0.88094 1.00360 0.72071 0.73230 0.72800 1.93355 1.73080 1.87541 1.45774 1.93372 1.72926 1.87653 1.45828 1.55973 1.55630 1.51038 1.26650 1.21132 0.93324 0.96217 0.89705 1.21958 0.98527 0.98048 0.97398 1.21637 0.96947 0.98736 0.94231 0.89704 1.22428 1.00650 0.96750 0.96103 1.24290 0.96281 1.04565 0.96497 1.87892 1.29597 1.32071 1.58788 1.24223 1.04509 0.95611 0.97100 0.89828 0.76816 0.92248 0.90718 0.90734 0.90941 0.90122 0.90084 0.89280 0.87857 0.88810 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.81 13.19 55.43 0.73 -24.08 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -1.02 -27.76 9.72 30.60 0.30 -27.46 16 8 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 9 S 2.72 71.01 5.02 -107.50 -0.54 70.47 16 10 O -1.01 -29.13 17.49 -57.17 -1.00 -30.13 16 11 O -1.01 -29.36 18.02 -57.17 -1.03 -30.39 16 12 N -1.14 -21.63 6.00 -10.61 -0.06 -21.69 16 13 C 0.12 1.94 6.00 -4.04 -0.02 1.92 16 14 C -0.12 -1.37 4.38 -26.73 -0.12 -1.49 16 15 C -0.09 -0.94 2.68 -90.28 -0.24 -1.18 16 16 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.12 -0.97 5.78 -25.71 -0.15 -1.12 16 18 C -0.07 -0.56 7.52 38.21 0.29 -0.27 16 19 S -0.31 -3.63 23.22 -107.50 -2.50 -6.13 16 20 C -0.07 -0.76 6.33 37.53 0.24 -0.52 16 21 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.40 6.53 8.65 -34.47 -0.30 6.23 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 1.25 6.39 -51.93 -0.33 0.92 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.08 0.66 7.83 -51.93 -0.41 0.26 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.11 1.36 6.75 -51.93 -0.35 1.01 16 LS Contribution 292.54 15.07 4.41 4.41 Total: -1.00 -34.89 292.54 -9.13 -44.02 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.31 Total: 4.68 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 0.19 Total: -26.54 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.67 Total: -45.77 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -2.03 Total: -60.52 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 67.38 SS G_CDS: -3.04 Total: 64.34 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.89 -9.13 -44.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704910838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.108 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds