Wall clock time and date at job start Mon Mar 30 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99682 * 359.72372 * 7 2 1 10 10 O 1.42099 * 106.40365 * 293.53683 * 9 7 2 11 11 O 1.42097 * 106.40383 * 66.46366 * 9 7 2 12 12 N 1.65604 * 107.21290 * 180.02562 * 9 7 2 13 13 C 1.46493 * 120.00348 * 64.99980 * 12 9 7 14 14 C 1.53002 * 109.47299 * 164.99858 * 13 12 9 15 15 C 1.52996 * 109.47141 * 179.97438 * 14 13 12 16 16 H 1.08996 * 108.85524 * 305.70060 * 15 14 13 17 17 C 1.52945 * 108.88850 * 187.12272 * 15 14 13 18 18 C 1.54994 * 109.04557 * 208.99869 * 17 15 14 19 19 S 1.83989 * 100.82100 * 41.60816 * 18 17 15 20 20 C 1.53710 * 108.88542 * 64.27912 * 15 14 13 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 0.97005 * 119.99609 * 244.99619 * 12 9 7 23 23 H 1.09005 * 109.47185 * 284.99710 * 13 12 9 24 24 H 1.08998 * 109.46930 * 44.99721 * 13 12 9 25 25 H 1.08995 * 109.47013 * 300.00026 * 14 13 12 26 26 H 1.09007 * 109.47115 * 59.99788 * 14 13 12 27 27 H 1.09000 * 109.60006 * 329.04128 * 17 15 14 28 28 H 1.08994 * 109.59868 * 89.17871 * 17 15 14 29 29 H 1.09000 * 111.23255 * 283.70675 * 18 17 15 30 30 H 1.09001 * 111.14801 * 159.47684 * 18 17 15 31 31 H 1.08993 * 110.34336 * 242.48864 * 20 15 14 32 32 H 1.09004 * 110.34423 * 4.64267 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 0.0061 10 8 0.4566 -2.7929 1.2588 11 8 0.4462 -2.7978 -1.2406 12 7 2.2483 -3.9354 0.0045 13 6 3.1437 -4.1064 1.1513 14 6 3.8088 -5.4824 1.0784 15 6 4.7444 -5.6606 2.2758 16 1 5.4427 -4.8242 2.3048 17 6 5.5337 -6.9586 2.0984 18 6 5.8880 -7.5300 3.4949 19 16 4.3108 -7.2402 4.3970 20 6 3.9083 -5.6558 3.5656 21 1 -0.4850 0.8401 0.0004 22 1 2.3142 -4.5342 -0.7558 23 1 3.9098 -3.3312 1.1329 24 1 2.5701 -4.0285 2.0749 25 1 3.0428 -6.2576 1.0969 26 1 4.3823 -5.5603 0.1548 27 1 4.9305 -7.6812 1.5489 28 1 6.4508 -6.7561 1.5453 29 1 6.7089 -6.9767 3.9511 30 1 6.1182 -8.5939 3.4377 31 1 4.1912 -4.8139 4.1973 32 1 2.8454 -5.6101 3.3280 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704910838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:12 Heat of formation + Delta-G solvation = -139.957899 kcal Electronic energy + Delta-G solvation = -16247.059303 eV Core-core repulsion = 13458.128705 eV Total energy + Delta-G solvation = -2788.930598 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.059 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.74154 -37.38028 -36.13503 -35.72053 -35.13173 -31.61049 -28.76870 -28.24990 -26.01775 -22.99505 -21.23502 -20.73841 -19.34083 -18.19411 -17.74360 -17.10613 -16.72771 -16.64749 -15.93291 -15.48976 -15.23613 -14.79355 -14.61107 -13.98053 -13.75489 -13.36590 -13.05187 -12.98688 -12.87160 -12.76612 -12.58767 -12.49132 -12.42586 -12.31674 -11.95705 -11.70288 -11.47474 -11.22406 -10.99637 -10.78543 -10.15151 -8.74405 -8.72137 -7.47729 0.37445 0.95334 1.35501 1.37444 1.45351 1.50444 2.21781 2.59340 3.00457 3.56936 3.67884 3.74715 3.87609 4.15142 4.21635 4.35306 4.40364 4.47693 4.58222 4.64824 4.76473 4.83037 4.85941 4.97712 5.03176 5.21425 5.26173 5.34446 5.41408 5.90475 6.43906 6.79170 8.21837 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.004715 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.311691 B = 5936.668157 C = 6214.791210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.991 3.009 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.249 1.249 7 C -1.040 5.040 8 H 0.123 0.877 9 S 2.719 3.281 10 O -1.046 7.046 11 O -1.047 7.047 12 N -1.122 6.122 13 C 0.112 3.888 14 C -0.109 4.109 15 C -0.090 4.090 16 H 0.099 0.901 17 C -0.116 4.116 18 C -0.050 4.050 19 S -0.371 6.371 20 C -0.064 4.064 21 H 0.298 0.702 22 H 0.416 0.584 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.816 -10.546 3.706 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.172 1.172 7 C -1.174 5.174 8 H 0.141 0.859 9 S 2.820 3.180 10 O -1.036 7.036 11 O -1.037 7.037 12 N -0.882 5.882 13 C -0.014 4.014 14 C -0.148 4.148 15 C -0.111 4.111 16 H 0.117 0.883 17 C -0.154 4.154 18 C -0.198 4.198 19 S -0.146 6.146 20 C -0.212 4.212 21 H 0.108 0.892 22 H 0.250 0.750 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.082 -11.146 4.750 18.577 hybrid contribution 0.704 1.524 -1.002 1.955 sum 14.786 -9.622 3.748 18.035 Atomic orbital electron populations 1.69996 1.08863 1.32375 1.41437 1.26047 0.95358 1.05496 0.87554 0.85145 0.78736 0.74420 0.80769 1.17359 1.19051 1.17236 1.30888 1.07267 1.12528 1.66696 0.85905 0.99852 0.72666 0.74083 0.71390 1.93302 1.74853 1.88323 1.47103 1.93308 1.74829 1.88464 1.47109 1.55318 1.54972 1.49542 1.28348 1.21461 0.92862 0.99514 0.87558 1.21887 0.98734 0.94863 0.99346 1.21666 0.96612 1.00582 0.92218 0.88271 1.22404 1.01430 0.95473 0.96143 1.24426 0.93885 1.05876 0.95598 1.88108 1.33134 1.32907 1.60403 1.24212 1.03720 0.95164 0.98063 0.89154 0.74993 0.91005 0.92415 0.91123 0.88593 0.90158 0.87348 0.87847 0.86264 0.88674 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.45 13.19 21.45 0.28 -53.17 16 2 C 0.07 3.76 5.46 84.66 0.46 4.22 16 3 Si 0.99 40.58 29.54 68.60 2.03 42.61 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -1.04 -56.16 9.72 67.74 0.66 -55.50 16 8 H 0.12 5.84 7.81 -2.92 -0.02 5.82 16 9 S 2.72 144.54 5.02 -56.49 -0.28 144.26 16 10 O -1.05 -62.42 17.49 -128.00 -2.24 -64.66 16 11 O -1.05 -62.50 18.02 -128.00 -2.31 -64.81 16 12 N -1.12 -41.97 6.00 -187.50 -1.12 -43.09 16 13 C 0.11 3.39 6.00 86.38 0.52 3.91 16 14 C -0.11 -2.24 4.38 30.59 0.13 -2.10 16 15 C -0.09 -1.54 2.68 -10.57 -0.03 -1.57 16 16 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 17 C -0.12 -1.44 5.78 31.26 0.18 -1.26 16 18 C -0.05 -0.68 7.52 72.66 0.55 -0.13 16 19 S -0.37 -8.47 23.22 -56.49 -1.31 -9.78 16 20 C -0.06 -1.41 6.33 72.22 0.46 -0.95 16 21 H 0.30 16.04 8.31 -92.71 -0.77 15.27 16 22 H 0.42 13.08 8.65 -96.74 -0.84 12.24 16 23 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 24 H 0.06 1.95 6.39 -2.39 -0.02 1.94 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.10 1.57 8.13 -2.38 -0.02 1.55 16 27 H 0.08 1.05 7.83 -2.39 -0.02 1.03 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 32 H 0.09 2.30 6.75 -2.39 -0.02 2.28 16 Total: -1.00 -77.30 292.54 -1.74 -79.04 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.28 Total: 22.99 kcal Atomic # 6 Polarization: -56.32 SS G_CDS: 2.93 Total: -53.39 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -0.84 Total: -96.26 kcal Atomic # 8 Polarization: -124.92 SS G_CDS: -4.54 Total: -129.47 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 136.08 SS G_CDS: -1.60 Total: 134.48 kcal Total: -77.30 -1.74 -79.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704910838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.919 kcal (2) G-P(sol) polarization free energy of solvation -77.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds