Wall clock time and date at job start Mon Mar 30 2020 04:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47169 * 2 1 4 4 H 1.08997 * 109.47496 * 305.64862 * 3 2 1 5 5 C 1.50701 * 109.46920 * 185.64811 * 3 2 1 6 6 H 1.08000 * 120.00046 * 240.00338 * 5 3 2 7 7 C 1.37882 * 120.00033 * 60.00220 * 5 3 2 8 8 N 1.31514 * 119.99982 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99793 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47381 * 90.00073 * 9 7 5 11 11 H 1.48500 * 109.46563 * 210.00283 * 9 7 5 12 12 H 1.48500 * 109.46969 * 329.99709 * 9 7 5 13 13 N 1.46895 * 109.46607 * 65.65019 * 3 2 1 14 14 C 1.46906 * 110.99923 * 203.82832 * 13 3 2 15 15 H 1.09005 * 110.05584 * 323.17635 * 14 13 3 16 16 C 1.53986 * 110.08200 * 84.68470 * 14 13 3 17 17 C 1.53275 * 108.45797 * 60.62717 * 16 14 13 18 18 C 1.52921 * 109.90181 * 60.88680 * 17 16 14 19 19 N 1.47329 * 109.75257 * 358.63021 * 18 17 16 20 20 C 1.47310 * 109.95720 * 62.22737 * 19 18 17 21 21 C 1.52924 * 109.77513 * 297.91981 * 20 19 18 22 22 C 1.47317 * 109.64735 * 301.50731 * 19 18 17 23 23 C 1.52342 * 118.48517 * 205.87810 * 22 19 18 24 24 C 1.52379 * 118.40732 * 275.59360 * 22 19 18 25 25 H 1.09006 * 109.47449 * 54.06867 * 1 2 3 26 26 H 1.08999 * 109.47547 * 174.06664 * 1 2 3 27 27 H 1.09004 * 109.47033 * 294.07280 * 1 2 3 28 28 H 1.09008 * 109.46478 * 240.00631 * 2 1 3 29 29 H 1.08993 * 109.47222 * 120.00605 * 2 1 3 30 30 H 0.96995 * 120.00064 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00696 * 327.78436 * 13 3 2 32 32 H 1.08999 * 110.20933 * 298.99545 * 16 14 13 33 33 H 1.09005 * 109.40024 * 181.01728 * 17 16 14 34 34 H 1.08997 * 109.40134 * 300.75464 * 17 16 14 35 35 H 1.08997 * 109.42400 * 238.53828 * 18 17 16 36 36 H 1.09007 * 109.42490 * 118.71470 * 18 17 16 37 37 H 1.09003 * 109.41856 * 177.82867 * 20 19 18 38 38 H 1.09003 * 109.42221 * 58.01360 * 20 19 18 39 39 H 1.08999 * 109.39672 * 240.98996 * 21 20 19 40 40 H 1.08993 * 109.40031 * 121.24596 * 21 20 19 41 41 H 1.08994 * 117.51678 * 215.73575 * 23 22 19 42 42 H 1.09003 * 117.51279 * 0.85534 * 23 22 19 43 43 H 1.08991 * 117.51991 * 359.02424 * 24 22 19 44 44 H 1.09004 * 117.51116 * 144.14807 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9848 -0.8350 5 6 3.5405 1.4448 -0.1398 6 1 4.1541 1.8863 0.6315 7 6 4.1301 0.8830 -1.2525 8 7 3.3829 0.3457 -2.1920 9 14 5.9900 0.8852 -1.4254 10 1 6.5454 -0.3491 -0.8147 11 1 6.3532 0.9321 -2.8646 12 1 6.5500 2.0745 -0.7346 13 7 1.6648 2.0944 1.2618 14 6 1.6113 3.5541 1.1046 15 1 2.4027 3.8870 0.4330 16 6 0.2371 3.9764 0.5528 17 6 -0.8417 3.5377 1.5493 18 6 -0.6140 4.2220 2.8978 19 7 0.5917 5.0661 2.8305 20 6 0.4065 6.1283 1.8268 21 6 0.2075 5.5050 0.4446 22 6 1.7560 4.2388 2.4696 23 6 3.1401 4.7032 2.9047 24 6 2.4874 3.4932 3.5793 25 1 -0.3634 0.6031 -0.8322 26 1 -0.3634 -1.0221 -0.1062 27 1 -0.3633 0.4192 0.9383 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.7976 -0.0498 -2.9745 31 1 0.7874 1.7355 1.6074 32 1 0.0698 3.5263 -0.4257 33 1 -1.8236 3.8135 1.1647 34 1 -0.7960 2.4565 1.6798 35 1 -0.4838 3.4650 3.6711 36 1 -1.4773 4.8418 3.1402 37 1 1.2874 6.7701 1.8115 38 1 -0.4696 6.7229 2.0857 39 1 1.0051 5.8365 -0.2203 40 1 -0.7541 5.8208 0.0400 41 1 3.9714 4.5135 2.2258 42 1 3.2036 5.6268 3.4801 43 1 2.1215 3.6211 4.5979 44 1 2.8893 2.5078 3.3437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716082947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:55 Heat of formation + Delta-G solvation = 28.850400 kcal Electronic energy + Delta-G solvation = -22048.734486 eV Core-core repulsion = 19194.145089 eV Total energy + Delta-G solvation = -2854.589397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69757 -36.02396 -35.37211 -32.68983 -31.47015 -30.78892 -29.79639 -27.00237 -25.57921 -23.04935 -22.83168 -22.06173 -21.49172 -20.45648 -19.44794 -16.98181 -16.15729 -16.01555 -15.81839 -15.33205 -14.64467 -14.48172 -13.71261 -13.55581 -13.19650 -12.79249 -12.67616 -12.28055 -12.01749 -11.97932 -11.67324 -11.54330 -11.27641 -11.18333 -11.09552 -10.86525 -10.82912 -10.60552 -10.39734 -10.12447 -9.90898 -9.79198 -9.76417 -9.60301 -9.19525 -8.99175 -8.34987 -8.10299 -7.12952 -5.96524 -4.00436 3.32227 3.38866 3.42554 4.13899 4.26332 4.45346 4.83458 5.04519 5.14697 5.20799 5.32445 5.35375 5.36296 5.42035 5.55112 5.63126 5.67950 5.85896 5.90708 6.01382 6.06015 6.09527 6.14694 6.17612 6.19681 6.27387 6.35947 6.38736 6.44326 6.52210 6.59982 6.64038 6.83545 6.87435 7.08944 7.17868 7.24442 7.40072 7.54246 7.78643 7.93007 8.33227 8.40557 8.78670 9.07810 9.64650 11.08700 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.007285 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.814266 B = 3842.340113 C = 4399.242450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.119 3.881 15 H 0.087 0.913 16 C -0.121 4.121 17 C -0.146 4.146 18 C 0.053 3.947 19 N -0.485 5.485 20 C 0.051 3.949 21 C -0.143 4.143 22 C 0.028 3.972 23 C -0.161 4.161 24 C -0.139 4.139 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.318 0.682 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 7.729 7.374 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.303 5.303 14 C 0.006 3.994 15 H 0.105 0.895 16 C -0.142 4.142 17 C -0.185 4.185 18 C -0.075 4.075 19 N -0.205 5.205 20 C -0.078 4.078 21 C -0.182 4.182 22 C -0.062 4.062 23 C -0.199 4.199 24 C -0.176 4.176 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.543 7.865 7.965 12.966 hybrid contribution -0.127 -0.313 -1.701 1.734 sum -6.670 7.551 6.264 11.864 Atomic orbital electron populations 1.21892 0.99733 0.99637 0.99366 1.21760 0.91101 1.00499 1.03009 1.19136 0.95313 0.89785 0.84462 0.98226 1.21204 0.91278 1.36356 1.04092 0.92119 1.24952 0.97950 0.95734 0.95902 1.69870 1.34598 1.39589 1.09581 0.86579 0.85989 0.78401 0.76908 1.20800 1.21522 1.19996 1.60767 1.35194 1.01544 1.32812 1.21587 0.94573 0.89890 0.93366 0.89481 1.21963 0.97564 0.95385 0.99280 1.22089 0.98529 1.01207 0.96708 1.22175 0.92560 0.96357 0.96440 1.63774 1.02486 1.10609 1.43616 1.22202 1.01549 0.94242 0.89783 1.22095 1.01612 0.95964 0.98555 1.21664 0.89357 0.99681 0.95544 1.22902 0.94585 0.98649 1.03757 1.22839 1.01960 0.97505 0.95336 0.94004 0.94447 0.94746 0.88311 0.94105 0.93155 0.86216 0.90506 0.92414 0.91511 0.90768 0.91406 0.90904 0.91352 0.91746 0.92501 0.88680 0.89476 0.89935 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.63 37.16 0.36 -2.49 16 2 C -0.13 -2.90 5.37 -26.73 -0.14 -3.04 16 3 C 0.22 5.28 1.88 -68.86 -0.13 5.15 16 4 H 0.00 0.00 7.19 -51.93 -0.37 -0.37 16 5 C -0.49 -13.16 8.45 -34.44 -0.29 -13.45 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.22 11.29 55.43 0.63 -24.60 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -13.55 4.90 -100.20 -0.49 -14.04 16 14 C 0.12 2.19 2.16 -66.99 -0.14 2.04 16 15 H 0.09 1.88 7.62 -51.93 -0.40 1.48 16 16 C -0.12 -1.97 3.07 -89.82 -0.28 -2.25 16 17 C -0.15 -2.08 5.42 -26.63 -0.14 -2.23 16 18 C 0.05 0.71 6.04 -3.63 -0.02 0.69 16 19 N -0.48 -7.02 5.42 -218.57 -1.18 -8.20 16 20 C 0.05 0.67 6.04 -3.64 -0.02 0.65 16 21 C -0.14 -2.02 5.65 -26.63 -0.15 -2.17 16 22 C 0.03 0.46 1.40 -131.82 -0.19 0.27 16 23 C -0.16 -2.54 10.22 -27.00 -0.28 -2.81 16 24 C -0.14 -2.23 9.82 -26.98 -0.26 -2.49 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.59 6.08 -51.93 -0.32 0.28 16 28 H 0.10 2.59 5.94 -51.92 -0.31 2.28 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.32 6.04 4.27 -39.29 -0.17 5.87 16 32 H 0.08 1.41 7.51 -51.93 -0.39 1.02 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.01 5.63 -51.93 -0.29 0.71 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.11 2.07 7.43 -51.93 -0.39 1.68 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -26.83 326.54 -10.60 -37.43 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.67 Total: 8.86 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.79 Total: -20.71 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -1.05 Total: -46.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.83 -10.60 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716082947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.281 kcal (2) G-P(sol) polarization free energy of solvation -26.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds