Wall clock time and date at job start Mon Mar 30 2020 04:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47169 * 2 1 4 4 H 1.08997 * 109.47496 * 305.64862 * 3 2 1 5 5 C 1.50701 * 109.46920 * 185.64811 * 3 2 1 6 6 H 1.08000 * 120.00046 * 240.00338 * 5 3 2 7 7 C 1.37882 * 120.00033 * 60.00220 * 5 3 2 8 8 N 1.31514 * 119.99982 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99793 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47381 * 90.00073 * 9 7 5 11 11 H 1.48500 * 109.46563 * 210.00283 * 9 7 5 12 12 H 1.48500 * 109.46969 * 329.99709 * 9 7 5 13 13 N 1.46895 * 109.46607 * 65.65019 * 3 2 1 14 14 C 1.46906 * 110.99923 * 203.82832 * 13 3 2 15 15 H 1.09005 * 110.05584 * 323.17635 * 14 13 3 16 16 C 1.53986 * 110.08200 * 84.68470 * 14 13 3 17 17 C 1.53275 * 108.45797 * 60.62717 * 16 14 13 18 18 C 1.52921 * 109.90181 * 60.88680 * 17 16 14 19 19 N 1.47329 * 109.75257 * 358.63021 * 18 17 16 20 20 C 1.47310 * 109.95720 * 62.22737 * 19 18 17 21 21 C 1.52924 * 109.77513 * 297.91981 * 20 19 18 22 22 C 1.47317 * 109.64735 * 301.50731 * 19 18 17 23 23 C 1.52342 * 118.48517 * 205.87810 * 22 19 18 24 24 C 1.52379 * 118.40732 * 275.59360 * 22 19 18 25 25 H 1.09006 * 109.47449 * 54.06867 * 1 2 3 26 26 H 1.08999 * 109.47547 * 174.06664 * 1 2 3 27 27 H 1.09004 * 109.47033 * 294.07280 * 1 2 3 28 28 H 1.09008 * 109.46478 * 240.00631 * 2 1 3 29 29 H 1.08993 * 109.47222 * 120.00605 * 2 1 3 30 30 H 0.96995 * 120.00064 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00696 * 327.78436 * 13 3 2 32 32 H 1.08999 * 110.20933 * 298.99545 * 16 14 13 33 33 H 1.09005 * 109.40024 * 181.01728 * 17 16 14 34 34 H 1.08997 * 109.40134 * 300.75464 * 17 16 14 35 35 H 1.08997 * 109.42400 * 238.53828 * 18 17 16 36 36 H 1.09007 * 109.42490 * 118.71470 * 18 17 16 37 37 H 1.09003 * 109.41856 * 177.82867 * 20 19 18 38 38 H 1.09003 * 109.42221 * 58.01360 * 20 19 18 39 39 H 1.08999 * 109.39672 * 240.98996 * 21 20 19 40 40 H 1.08993 * 109.40031 * 121.24596 * 21 20 19 41 41 H 1.08994 * 117.51678 * 215.73575 * 23 22 19 42 42 H 1.09003 * 117.51279 * 0.85534 * 23 22 19 43 43 H 1.08991 * 117.51991 * 359.02424 * 24 22 19 44 44 H 1.09004 * 117.51116 * 144.14807 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9848 -0.8350 5 6 3.5405 1.4448 -0.1398 6 1 4.1541 1.8863 0.6315 7 6 4.1301 0.8830 -1.2525 8 7 3.3829 0.3457 -2.1920 9 14 5.9900 0.8852 -1.4254 10 1 6.5454 -0.3491 -0.8147 11 1 6.3532 0.9321 -2.8646 12 1 6.5500 2.0745 -0.7346 13 7 1.6648 2.0944 1.2618 14 6 1.6113 3.5541 1.1046 15 1 2.4027 3.8870 0.4330 16 6 0.2371 3.9764 0.5528 17 6 -0.8417 3.5377 1.5493 18 6 -0.6140 4.2220 2.8978 19 7 0.5917 5.0661 2.8305 20 6 0.4065 6.1283 1.8268 21 6 0.2075 5.5050 0.4446 22 6 1.7560 4.2388 2.4696 23 6 3.1401 4.7032 2.9047 24 6 2.4874 3.4932 3.5793 25 1 -0.3634 0.6031 -0.8322 26 1 -0.3634 -1.0221 -0.1062 27 1 -0.3633 0.4192 0.9383 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.7976 -0.0498 -2.9745 31 1 0.7874 1.7355 1.6074 32 1 0.0698 3.5263 -0.4257 33 1 -1.8236 3.8135 1.1647 34 1 -0.7960 2.4565 1.6798 35 1 -0.4838 3.4650 3.6711 36 1 -1.4773 4.8418 3.1402 37 1 1.2874 6.7701 1.8115 38 1 -0.4696 6.7229 2.0857 39 1 1.0051 5.8365 -0.2203 40 1 -0.7541 5.8208 0.0400 41 1 3.9714 4.5135 2.2258 42 1 3.2036 5.6268 3.4801 43 1 2.1215 3.6211 4.5979 44 1 2.8893 2.5078 3.3437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716082947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:54 Heat of formation + Delta-G solvation = 12.721639 kcal Electronic energy + Delta-G solvation = -22049.433882 eV Core-core repulsion = 19194.145089 eV Total energy + Delta-G solvation = -2855.288793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.97457 -37.77982 -36.64825 -34.49930 -33.19334 -31.92641 -31.22937 -28.74972 -27.19549 -24.81156 -23.97194 -23.44629 -22.83873 -21.78141 -21.26845 -18.51976 -17.86906 -17.38006 -17.15755 -16.90768 -16.30076 -15.89924 -15.42429 -14.99968 -14.60832 -14.44055 -13.90776 -13.80513 -13.53268 -13.30870 -13.07819 -12.97723 -12.93284 -12.69314 -12.57054 -12.49898 -12.37932 -12.14827 -11.97821 -11.77283 -11.58407 -11.39683 -11.22659 -11.15570 -10.80034 -10.51212 -10.42209 -9.39889 -8.79817 -8.07298 -6.18679 1.38459 1.39567 1.49307 2.42029 2.92478 2.99033 3.17787 3.62694 3.69983 3.84985 3.90384 4.05853 4.24354 4.28821 4.35233 4.37768 4.44601 4.45573 4.53200 4.62452 4.67180 4.74140 4.79534 4.89549 4.96207 4.98701 5.03935 5.06765 5.16507 5.17073 5.22829 5.24631 5.28881 5.32546 5.37750 5.54416 5.60279 5.74982 5.89386 6.13058 6.17783 6.37470 6.54834 6.95802 7.03938 7.50313 8.95521 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.007285 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.814266 B = 3842.340113 C = 4399.242450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.232 3.768 4 H -0.037 1.037 5 C -0.505 4.505 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.118 3.882 15 H 0.043 0.957 16 C -0.121 4.121 17 C -0.140 4.140 18 C 0.053 3.947 19 N -0.479 5.479 20 C 0.052 3.948 21 C -0.139 4.139 22 C 0.029 3.971 23 C -0.158 4.158 24 C -0.134 4.134 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.259 0.741 31 H 0.327 0.673 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 8.888 9.130 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.123 3.877 4 H -0.019 1.019 5 C -0.544 4.544 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.299 5.299 14 C 0.006 3.994 15 H 0.062 0.938 16 C -0.142 4.142 17 C -0.179 4.179 18 C -0.075 4.075 19 N -0.199 5.199 20 C -0.077 4.077 21 C -0.179 4.179 22 C -0.062 4.062 23 C -0.195 4.195 24 C -0.171 4.171 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.883 9.034 9.735 15.444 hybrid contribution 0.289 -0.656 -2.277 2.387 sum -7.594 8.378 7.458 13.546 Atomic orbital electron populations 1.21739 0.96434 1.00982 1.00196 1.21586 0.94074 0.99195 1.01101 1.18833 0.93701 0.90291 0.84829 1.01922 1.21449 0.92886 1.36166 1.03899 0.93414 1.25648 1.01976 0.95538 0.95697 1.69999 1.36052 1.40108 1.09877 0.85659 0.81228 0.78454 0.76898 1.20179 1.21100 1.19774 1.60671 1.35847 1.02744 1.30650 1.21479 0.94714 0.88779 0.94477 0.93843 1.21859 0.96894 0.97089 0.98354 1.22060 0.98444 1.00677 0.96737 1.22286 0.92916 0.96734 0.95547 1.63819 1.02127 1.10403 1.43599 1.22300 1.02952 0.93913 0.88493 1.22077 1.02237 0.94071 0.99466 1.21495 0.90626 1.00009 0.94037 1.22886 0.93727 0.99489 1.03447 1.22751 1.01823 0.96352 0.96209 0.94787 0.92463 0.92578 0.91529 0.94535 0.93203 0.85231 0.93527 0.90414 0.92536 0.90638 0.88578 0.90836 0.88478 0.93196 0.90465 0.90716 0.87282 0.87851 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 9.63 71.98 0.69 -4.46 16 2 C -0.12 -5.74 5.37 30.60 0.16 -5.58 16 3 C 0.23 11.62 1.88 44.17 0.08 11.70 16 4 H -0.04 -2.08 7.19 -2.39 -0.02 -2.10 16 5 C -0.51 -28.29 8.45 25.60 0.22 -28.08 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.52 5.29 84.66 0.45 0.97 16 8 N -0.92 -53.52 11.29 21.45 0.24 -53.28 16 9 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 13 N -0.67 -27.68 4.90 -470.91 -2.31 -29.99 16 14 C 0.12 4.47 2.16 45.38 0.10 4.57 16 15 H 0.04 2.00 7.62 -2.38 -0.02 1.99 16 16 C -0.12 -3.93 3.07 -10.28 -0.03 -3.96 16 17 C -0.14 -3.68 5.42 30.66 0.17 -3.51 16 18 C 0.05 1.24 6.04 86.19 0.52 1.76 16 19 N -0.48 -12.48 5.42 -845.42 -4.58 -17.06 16 20 C 0.05 1.21 6.04 86.20 0.52 1.73 16 21 C -0.14 -3.74 5.65 30.66 0.17 -3.56 16 22 C 0.03 0.92 1.40 3.16 0.00 0.93 16 23 C -0.16 -4.86 10.22 30.42 0.31 -4.55 16 24 C -0.13 -4.16 9.82 30.43 0.30 -3.86 16 25 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.86 6.08 -2.39 -0.01 1.85 16 28 H 0.07 3.62 5.94 -2.38 -0.01 3.60 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.33 12.40 4.27 -89.69 -0.38 12.02 16 32 H 0.05 1.78 7.51 -2.39 -0.02 1.76 16 33 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.06 1.59 5.63 -2.39 -0.01 1.58 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.77 8.13 -2.38 -0.02 1.75 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.80 8.13 -2.39 -0.02 1.78 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.09 3.28 7.43 -2.38 -0.02 3.26 16 Total: -1.00 -60.05 326.54 -0.38 -60.43 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.58 Total: 28.87 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 3.67 Total: -35.90 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -6.65 Total: -100.32 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -60.05 -0.38 -60.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716082947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.153 kcal (2) G-P(sol) polarization free energy of solvation -60.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds