Wall clock time and date at job start Mon Mar 30 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46953 * 179.97438 * 9 7 2 11 11 S 1.65600 * 120.00268 * 164.99349 * 10 9 7 12 12 O 1.52201 * 109.47339 * 300.00314 * 11 10 9 13 13 O 1.42105 * 109.46490 * 60.00027 * 11 10 9 14 14 C 1.55351 * 109.47267 * 180.02562 * 11 10 9 15 15 N 1.31654 * 126.87275 * 0.02562 * 14 11 10 16 16 N 1.26161 * 122.84098 * 179.97438 * 15 14 11 17 17 C 1.47273 * 115.42482 * 0.02562 * 16 15 14 18 18 H 1.09001 * 110.83323 * 118.20722 * 17 16 15 19 19 N 1.46898 * 110.82961 * 241.58711 * 17 16 15 20 20 S 1.77645 * 126.87054 * 179.71384 * 14 11 10 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 23 23 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 24 24 H 0.97003 * 120.00215 * 344.99802 * 10 9 7 25 25 H 0.96694 * 113.99867 * 300.00018 * 12 11 10 26 26 H 1.00900 * 111.00750 * 298.54388 * 19 17 16 27 27 H 1.00903 * 111.00304 * 62.50523 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 16 1.6882 -5.1425 0.3673 12 8 1.1079 -5.1562 1.7742 13 8 0.6897 -5.5436 -0.5609 14 6 2.8893 -6.1251 0.2935 15 7 4.1353 -5.8282 -0.0108 16 7 5.0548 -6.6912 -0.0476 17 6 4.6431 -8.0680 0.2742 18 1 4.8116 -8.7314 -0.5741 19 7 5.3474 -8.5588 1.4662 20 16 2.8577 -7.8728 0.6104 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5574 0.8881 23 1 0.6247 -2.5564 -0.8919 24 1 3.1349 -3.4539 -0.2200 25 1 1.7353 -4.8924 2.4610 26 1 6.3446 -8.5802 1.3139 27 1 5.1173 -8.0033 2.2766 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725698912.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:52 Heat of formation + Delta-G solvation = -16.282833 kcal Electronic energy + Delta-G solvation = -16125.409741 eV Core-core repulsion = 13172.875842 eV Total energy + Delta-G solvation = -2952.533899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 266.029 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.02217 -38.88718 -36.65392 -35.57402 -33.97215 -32.71501 -30.04965 -26.69750 -25.49559 -23.13530 -22.45997 -21.22360 -19.23065 -18.46943 -17.56282 -17.27926 -16.96261 -16.20184 -15.15805 -15.03989 -14.55356 -14.27152 -13.91643 -13.43544 -13.39436 -12.97573 -12.88263 -12.71028 -12.08247 -11.80833 -11.36939 -11.00891 -10.80795 -10.30456 -9.94114 -9.75707 -9.46238 -9.10951 -8.88356 -8.69877 -7.26933 -6.80792 -4.59232 -0.51655 1.23149 1.89611 2.00040 2.41004 3.00324 3.24506 3.26963 3.45075 3.97261 4.22667 4.39670 4.61926 4.95927 5.14732 5.21918 5.33455 5.72005 6.41814 6.56930 6.64647 6.98278 7.08276 7.51719 7.97514 8.35660 8.65135 9.11497 10.58143 Molecular weight = 266.03amu Principal moments of inertia in cm(-1) A = 0.036732 B = 0.005319 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.099691 B = 5263.240278 C = 5759.833896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 1.076 2.924 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.619 4.619 8 H 0.068 0.932 9 C 0.232 3.768 10 N -1.064 6.064 11 S 2.796 3.204 12 O -0.846 6.846 13 O -0.900 6.900 14 C -0.972 4.972 15 N -0.059 5.059 16 N -0.326 5.326 17 C 0.226 3.774 18 H 0.126 0.874 19 N -0.813 5.813 20 S -0.136 6.136 21 H 0.271 0.729 22 H 0.025 0.975 23 H 0.034 0.966 24 H 0.434 0.566 25 H 0.467 0.533 26 H 0.349 0.651 27 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 -8.145 5.161 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.180 4.180 3 Si 0.902 3.098 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.659 4.659 8 H 0.087 0.913 9 C 0.109 3.891 10 N -0.834 5.834 11 S 2.900 3.100 12 O -0.705 6.705 13 O -0.888 6.888 14 C -1.312 5.312 15 N 0.057 4.943 16 N -0.224 5.224 17 C -0.086 4.086 18 H 0.144 0.856 19 N -0.349 5.349 20 S 0.083 5.917 21 H 0.081 0.919 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.272 0.728 25 H 0.336 0.664 26 H 0.165 0.835 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.389 -7.759 4.880 9.772 hybrid contribution 2.192 -1.301 0.226 2.559 sum 5.580 -9.059 5.107 11.802 Atomic orbital electron populations 1.70831 1.06879 1.30908 1.44280 1.26000 0.96290 1.02868 0.92808 0.83420 0.74874 0.74479 0.76982 1.20407 1.21049 1.20905 1.21989 0.95165 0.89977 1.58725 0.91343 1.19560 0.88134 0.84149 0.97212 1.54737 1.22795 1.21512 1.84340 0.97398 0.69106 0.70567 0.72924 1.85884 1.57943 1.89588 1.37056 1.93507 1.57903 1.81243 1.56191 1.34354 1.18317 1.14347 1.64181 1.69650 0.95105 1.31504 0.98041 1.78365 1.20623 0.97767 1.25657 1.26544 0.89653 0.96791 0.95632 0.85644 1.59664 1.13463 1.57911 1.03871 1.86188 1.14187 1.00167 1.91162 0.91850 0.95729 0.94841 0.72755 0.66421 0.83482 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.75 13.65 55.43 0.76 -22.99 15 2 C 0.03 0.68 5.46 -17.82 -0.10 0.58 15 3 Si 1.08 21.85 29.90 -169.99 -5.08 16.77 15 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 6 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 7 C -0.62 -14.44 9.27 -34.44 -0.32 -14.76 15 8 H 0.07 1.53 7.65 -52.49 -0.40 1.13 15 9 C 0.23 4.73 5.38 -5.19 -0.03 4.70 15 10 N -1.06 -16.84 6.02 -11.66 -0.07 -16.91 15 11 S 2.80 40.62 4.82 -107.17 -0.52 40.10 15 12 O -0.85 -9.15 13.48 -58.38 -0.79 -9.94 15 13 O -0.90 -17.12 18.04 -58.38 -1.05 -18.17 15 14 C -0.97 -15.55 6.89 52.69 0.36 -15.19 15 15 N -0.06 -0.99 10.79 28.15 0.30 -0.69 15 16 N -0.33 -5.54 12.39 -9.61 -0.12 -5.66 15 17 C 0.23 3.49 5.45 -62.47 -0.34 3.15 15 18 H 0.13 1.88 8.14 -51.93 -0.42 1.46 15 19 N -0.81 -10.32 9.63 -9.69 -0.09 -10.41 15 20 S -0.14 -2.25 23.14 -107.17 -2.48 -4.73 15 21 H 0.27 7.03 7.22 -40.82 -0.29 6.74 15 22 H 0.03 0.48 8.01 -51.93 -0.42 0.07 15 23 H 0.03 0.74 8.01 -51.93 -0.42 0.32 15 24 H 0.43 6.53 7.98 -34.47 -0.27 6.26 15 25 H 0.47 2.18 9.03 67.38 0.61 2.79 15 26 H 0.35 3.76 9.08 -39.29 -0.36 3.40 15 27 H 0.34 4.21 8.98 -39.29 -0.35 3.85 15 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -33.01 269.71 -6.62 -39.63 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -1.12 Total: 10.45 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.42 Total: -21.51 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.78 Total: -56.66 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.84 Total: -28.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.08 Total: 16.77 kcal Atomic # 16 Polarization: 38.37 SS G_CDS: -3.00 Total: 35.37 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.01 -6.62 -39.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725698912.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.347 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds