Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46953 * 179.97438 * 9 7 2 11 11 S 1.65600 * 120.00268 * 164.99349 * 10 9 7 12 12 O 1.52201 * 109.47339 * 300.00314 * 11 10 9 13 13 O 1.42105 * 109.46490 * 60.00027 * 11 10 9 14 14 C 1.55351 * 109.47267 * 180.02562 * 11 10 9 15 15 N 1.31654 * 126.87275 * 0.02562 * 14 11 10 16 16 N 1.26161 * 122.84098 * 179.97438 * 15 14 11 17 17 C 1.47273 * 115.42482 * 0.02562 * 16 15 14 18 18 H 1.09001 * 110.83323 * 118.20722 * 17 16 15 19 19 N 1.46898 * 110.82961 * 241.58711 * 17 16 15 20 20 S 1.77645 * 126.87054 * 179.71384 * 14 11 10 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 23 23 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 24 24 H 0.97003 * 120.00215 * 344.99802 * 10 9 7 25 25 H 0.96694 * 113.99867 * 300.00018 * 12 11 10 26 26 H 1.00900 * 111.00750 * 298.54388 * 19 17 16 27 27 H 1.00903 * 111.00304 * 62.50523 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 16 1.6882 -5.1425 0.3673 12 8 1.1079 -5.1562 1.7742 13 8 0.6897 -5.5436 -0.5609 14 6 2.8893 -6.1251 0.2935 15 7 4.1353 -5.8282 -0.0108 16 7 5.0548 -6.6912 -0.0476 17 6 4.6431 -8.0680 0.2742 18 1 4.8116 -8.7314 -0.5741 19 7 5.3474 -8.5588 1.4662 20 16 2.8577 -7.8728 0.6104 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5574 0.8881 23 1 0.6247 -2.5564 -0.8919 24 1 3.1349 -3.4539 -0.2200 25 1 1.7353 -4.8924 2.4610 26 1 6.3446 -8.5802 1.3139 27 1 5.1173 -8.0033 2.2766 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725698912.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = -49.272251 kcal Electronic energy + Delta-G solvation = -16126.840270 eV Core-core repulsion = 13172.875842 eV Total energy + Delta-G solvation = -2953.964427 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 266.029 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.26748 -39.96049 -38.03451 -37.11277 -35.10859 -34.41638 -31.30279 -28.38200 -26.70022 -24.85250 -23.68390 -22.37865 -20.48857 -19.87745 -18.83524 -18.77429 -18.18063 -17.34676 -16.44833 -16.29285 -15.94315 -15.52362 -15.43091 -14.96643 -14.74617 -14.42687 -14.19598 -13.98712 -13.50549 -13.23970 -13.04300 -12.57710 -12.00319 -11.89667 -11.28601 -11.17967 -10.85941 -10.75561 -10.45337 -10.02109 -8.72057 -8.55415 -6.49662 -1.74918 -0.01216 0.63982 0.74915 1.29286 1.63658 1.68081 1.78024 1.87293 2.57475 2.74033 3.11790 3.31467 3.39146 3.95664 4.00987 4.07573 4.61289 4.86912 5.02967 5.53408 5.61414 5.90093 6.14857 6.15490 6.46505 7.28098 7.37033 8.68578 Molecular weight = 266.03amu Principal moments of inertia in cm(-1) A = 0.036732 B = 0.005319 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.099691 B = 5263.240278 C = 5759.833896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.022 4.022 3 Si 1.117 2.883 4 H -0.290 1.290 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.622 4.622 8 H 0.077 0.923 9 C 0.234 3.766 10 N -1.062 6.062 11 S 2.843 3.157 12 O -0.828 6.828 13 O -0.947 6.947 14 C -0.975 4.975 15 N -0.065 5.065 16 N -0.340 5.340 17 C 0.229 3.771 18 H 0.129 0.871 19 N -0.805 5.805 20 S -0.159 6.159 21 H 0.263 0.737 22 H 0.037 0.963 23 H 0.012 0.988 24 H 0.438 0.562 25 H 0.492 0.508 26 H 0.362 0.638 27 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.663 -8.354 6.136 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.222 4.222 3 Si 0.938 3.062 4 H -0.215 1.215 5 H -0.189 1.189 6 H -0.198 1.198 7 C -0.662 4.662 8 H 0.095 0.905 9 C 0.110 3.890 10 N -0.831 5.831 11 S 2.946 3.054 12 O -0.693 6.693 13 O -0.935 6.935 14 C -1.315 5.315 15 N 0.051 4.949 16 N -0.238 5.238 17 C -0.084 4.084 18 H 0.146 0.854 19 N -0.342 5.342 20 S 0.059 5.941 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.030 0.970 24 H 0.278 0.722 25 H 0.367 0.633 26 H 0.180 0.820 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.700 -7.992 5.879 10.978 hybrid contribution 1.834 -1.350 -0.023 2.278 sum 6.535 -9.341 5.856 12.816 Atomic orbital electron populations 1.70934 1.07991 1.30526 1.47162 1.27222 0.96332 1.06303 0.92373 0.82905 0.74069 0.71049 0.78177 1.21548 1.18900 1.19751 1.22378 0.95864 0.91097 1.56850 0.90528 1.19272 0.88408 0.84588 0.96763 1.54404 1.22313 1.21147 1.85208 0.95802 0.67547 0.69314 0.72754 1.85863 1.57657 1.89446 1.36287 1.93454 1.59427 1.81752 1.58898 1.34404 1.18139 1.14280 1.64638 1.69628 0.95325 1.31781 0.98196 1.78319 1.20985 0.98516 1.25958 1.26554 0.88964 0.96212 0.96650 0.85379 1.59593 1.14240 1.57399 1.02999 1.86245 1.15780 1.00817 1.91255 0.92763 0.94509 0.96968 0.72241 0.63293 0.82040 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.66 13.65 21.45 0.29 -49.37 15 2 C -0.02 -1.06 5.46 84.66 0.46 -0.59 15 3 Si 1.12 43.04 29.90 68.60 2.05 45.09 15 4 H -0.29 -11.59 7.11 99.48 0.71 -10.89 15 5 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 6 H -0.27 -9.92 7.11 99.48 0.71 -9.21 15 7 C -0.62 -28.41 9.27 25.60 0.24 -28.17 15 8 H 0.08 3.30 7.65 -2.91 -0.02 3.27 15 9 C 0.23 9.37 5.38 85.63 0.46 9.83 15 10 N -1.06 -32.21 6.02 -190.79 -1.15 -33.36 15 11 S 2.84 78.39 4.82 -55.82 -0.27 78.12 15 12 O -0.83 -15.81 13.48 -126.85 -1.71 -17.51 15 13 O -0.95 -35.44 18.04 -126.85 -2.29 -37.73 15 14 C -0.98 -29.64 6.89 130.27 0.90 -28.75 15 15 N -0.07 -2.10 10.79 -64.85 -0.70 -2.80 15 16 N -0.34 -10.98 12.39 -184.33 -2.28 -13.27 15 17 C 0.23 6.68 5.45 170.51 0.93 7.61 15 18 H 0.13 3.66 8.14 -2.39 -0.02 3.64 15 19 N -0.80 -18.74 9.63 -184.58 -1.78 -20.52 15 20 S -0.16 -5.05 23.14 -55.82 -1.29 -6.34 15 21 H 0.26 13.86 7.22 -92.71 -0.67 13.19 15 22 H 0.04 1.40 8.01 -2.39 -0.02 1.38 15 23 H 0.01 0.55 8.01 -2.39 -0.02 0.53 15 24 H 0.44 12.54 7.98 -96.74 -0.77 11.77 15 25 H 0.49 2.97 9.03 -87.94 -0.79 2.17 15 26 H 0.36 6.98 9.08 -89.69 -0.81 6.17 15 27 H 0.35 7.75 8.98 -89.69 -0.81 6.94 15 Total: -1.00 -69.37 269.71 -7.95 -77.32 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -1.81 Total: 20.44 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 2.99 Total: -40.08 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -5.62 Total: -119.31 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -4.00 Total: -55.24 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.05 Total: 45.09 kcal Atomic # 16 Polarization: 73.34 SS G_CDS: -1.56 Total: 71.77 kcal Total: -69.37 -7.95 -77.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725698912.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.051 kcal (2) G-P(sol) polarization free energy of solvation -69.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds