Wall clock time and date at job start Mon Mar 30 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48499 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47395 * 300.00004 * 3 2 1 6 6 H 1.48498 * 109.47160 * 60.00421 * 3 2 1 7 7 C 1.38816 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99896 * 165.46696 * 7 2 1 9 9 N 1.36933 * 119.99674 * 345.46155 * 7 2 1 10 10 C 1.46501 * 120.00388 * 308.34622 * 9 7 2 11 11 C 1.52995 * 117.49655 * 1.78356 * 10 9 7 12 12 C 1.52997 * 117.49721 * 293.12181 * 10 9 7 13 13 S 1.65610 * 119.99641 * 128.34892 * 9 7 2 14 14 O 1.42097 * 104.27520 * 153.92381 * 13 9 7 15 15 O 1.42097 * 104.27384 * 26.07083 * 13 9 7 16 16 C 1.81400 * 104.44863 * 269.99552 * 13 9 7 17 17 Cl 1.80294 * 115.55160 * 325.58632 * 16 13 9 18 18 C 1.53001 * 117.49274 * 111.25249 * 16 13 9 19 19 C 1.52995 * 117.49518 * 179.90944 * 16 13 9 20 20 H 0.97000 * 120.00000 * 356.34939 * 1 2 3 21 21 H 1.09000 * 115.55112 * 147.45495 * 10 9 7 22 22 H 1.08998 * 117.50189 * 0.02562 * 11 10 9 23 23 H 1.09001 * 117.49437 * 145.01933 * 11 10 9 24 24 H 1.08998 * 117.49774 * 214.97855 * 12 10 9 25 25 H 1.08994 * 117.49855 * 0.02562 * 12 10 9 26 26 H 1.09005 * 117.49353 * 214.99898 * 18 16 13 27 27 H 1.08994 * 117.50463 * 0.02648 * 18 16 13 28 28 H 1.08996 * 117.50448 * 359.97438 * 19 16 13 29 29 H 1.09004 * 117.49757 * 144.97771 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0644 -1.2171 -0.2353 9 7 1.3584 -2.3692 0.2966 10 6 0.5553 -2.4692 1.5178 11 6 0.4504 -1.2224 2.3983 12 6 1.2947 -2.4144 2.8561 13 16 1.4780 -3.6675 -0.7244 14 8 1.2580 -4.7938 0.1136 15 8 2.7209 -3.4790 -1.3869 16 6 0.0998 -3.4589 -1.8853 17 17 -1.3975 -2.7319 -1.1922 18 6 0.4441 -3.1183 -3.3366 19 6 -0.0687 -4.5155 -2.9789 20 1 -0.4850 0.8383 0.0535 21 1 -0.3207 -3.1146 1.4528 22 1 0.9785 -0.3277 2.0689 23 1 -0.4945 -1.0479 2.9130 24 1 0.9050 -3.0235 3.6717 25 1 2.3786 -2.3035 2.8280 26 1 -0.2347 -2.4547 -3.8724 27 1 1.4986 -3.0200 -3.5940 28 1 0.6487 -5.3357 -3.0012 29 1 -1.0849 -4.7714 -3.2791 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725700021.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:14 Heat of formation + Delta-G solvation = -9.318962 kcal Electronic energy + Delta-G solvation = -17289.522697 eV Core-core repulsion = 14368.380228 eV Total energy + Delta-G solvation = -2921.142469 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 265.033 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.26267 -36.61152 -35.70887 -34.63540 -34.36969 -33.00091 -31.05960 -25.00433 -22.25740 -22.17962 -21.29995 -20.72118 -18.29750 -17.17571 -16.68355 -16.06844 -15.10945 -14.90051 -14.30347 -13.87301 -13.47528 -12.90255 -12.35979 -11.93123 -11.55685 -11.49712 -11.32424 -11.21291 -10.87887 -10.77329 -10.75777 -10.69676 -10.61403 -10.40909 -10.37918 -9.77208 -9.32335 -9.21744 -9.01204 -8.74975 -7.54538 -6.57569 -4.31137 1.54917 2.75391 3.05596 3.14417 3.19760 3.68801 3.92848 4.28987 4.65646 4.84990 5.00870 5.06707 5.29424 5.56560 5.76500 5.82444 5.99276 6.11453 6.13305 6.20123 6.30743 6.48069 6.60166 6.96734 7.19046 7.29082 7.56831 8.27027 8.62723 9.17908 10.33818 Molecular weight = 265.03amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.011300 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.778041 B = 2477.260075 C = 2714.218441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.102 0.898 9 N -0.760 5.760 10 C 0.129 3.871 11 C -0.150 4.150 12 C -0.212 4.212 13 S 2.490 3.510 14 O -0.994 6.994 15 O -0.973 6.973 16 C -0.554 4.554 17 Cl -0.080 7.080 18 C -0.126 4.126 19 C -0.157 4.157 20 H 0.274 0.726 21 H 0.105 0.895 22 H 0.110 0.890 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 -0.355 -1.160 2.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.169 4.169 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.394 4.394 8 H 0.120 0.880 9 N -0.581 5.581 10 C 0.021 3.979 11 C -0.189 4.189 12 C -0.252 4.252 13 S 2.588 3.412 14 O -0.983 6.983 15 O -0.963 6.963 16 C -0.654 4.654 17 Cl -0.053 7.053 18 C -0.164 4.164 19 C -0.195 4.195 20 H 0.085 0.915 21 H 0.123 0.877 22 H 0.128 0.872 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.795 -1.221 -1.329 2.545 hybrid contribution -0.647 1.163 -0.469 1.411 sum -2.442 -0.058 -1.798 3.034 Atomic orbital electron populations 1.70199 1.06091 1.28526 1.36708 1.25965 0.95439 1.00795 0.94738 0.86104 0.80795 0.81178 0.78342 1.18464 1.20220 1.19994 1.19691 0.93181 0.82852 1.43656 0.88019 1.52694 1.54670 1.28177 1.22518 1.20805 0.94890 1.01020 0.81196 1.23116 0.99830 0.94049 1.01892 1.23417 0.99509 1.03584 0.98697 1.14164 0.76508 0.76572 0.73925 1.93337 1.87025 1.54574 1.63363 1.93358 1.39568 1.86290 1.77070 1.37055 1.10560 1.08764 1.09068 1.98676 1.37101 1.84143 1.85339 1.22989 1.03334 0.97369 0.92690 1.23070 1.03625 0.92606 1.00203 0.91520 0.87740 0.87238 0.90771 0.90146 0.89166 0.87664 0.86624 0.88129 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.59 11.50 55.49 0.64 -16.95 15 2 C 0.05 1.08 3.14 -17.43 -0.05 1.02 15 3 Si 0.91 17.64 29.44 -169.99 -5.00 12.64 15 4 H -0.26 -5.10 7.11 56.52 0.40 -4.69 15 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 7 C -0.24 -5.81 8.24 -15.06 -0.12 -5.93 15 8 H 0.10 2.49 7.68 -52.49 -0.40 2.09 15 9 N -0.76 -18.07 2.56 -53.43 -0.14 -18.21 15 10 C 0.13 2.86 4.91 -67.93 -0.33 2.53 15 11 C -0.15 -3.03 8.32 -26.69 -0.22 -3.25 15 12 C -0.21 -4.17 10.38 -26.69 -0.28 -4.45 15 13 S 2.49 59.49 5.63 -107.50 -0.61 58.89 15 14 O -0.99 -25.50 17.26 -57.54 -0.99 -26.49 15 15 O -0.97 -25.03 16.38 -57.54 -0.94 -25.97 15 16 C -0.55 -11.48 3.30 -26.73 -0.09 -11.57 15 17 Cl -0.08 -1.66 28.03 -51.86 -1.45 -3.11 15 18 C -0.13 -2.27 10.01 -26.69 -0.27 -2.54 15 19 C -0.16 -2.68 10.14 -26.70 -0.27 -2.95 15 20 H 0.27 5.84 8.32 -40.82 -0.34 5.50 15 21 H 0.10 2.30 7.85 -51.93 -0.41 1.89 15 22 H 0.11 2.33 5.06 -51.93 -0.26 2.07 15 23 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 24 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.09 1.80 8.14 -51.93 -0.42 1.37 15 26 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15 27 H 0.12 2.07 7.66 -51.93 -0.40 1.67 15 28 H 0.10 1.59 8.14 -51.93 -0.42 1.17 15 29 H 0.11 1.60 8.14 -51.93 -0.42 1.17 15 LS Contribution 275.98 15.07 4.16 4.16 Total: -1.00 -27.42 275.98 -9.12 -36.54 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.14 Total: 5.65 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -1.64 Total: -27.14 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.50 Total: -35.16 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -1.94 Total: -52.47 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.00 Total: 12.64 kcal Atomic # 16 Polarization: 59.49 SS G_CDS: -0.61 Total: 58.89 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -1.45 Total: -3.11 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.42 -9.12 -36.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725700021.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.221 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds