Wall clock time and date at job start Mon Mar 30 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48499 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47395 * 300.00004 * 3 2 1 6 6 H 1.48498 * 109.47160 * 60.00421 * 3 2 1 7 7 C 1.38816 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99896 * 165.46696 * 7 2 1 9 9 N 1.36933 * 119.99674 * 345.46155 * 7 2 1 10 10 C 1.46501 * 120.00388 * 308.34622 * 9 7 2 11 11 C 1.52995 * 117.49655 * 1.78356 * 10 9 7 12 12 C 1.52997 * 117.49721 * 293.12181 * 10 9 7 13 13 S 1.65610 * 119.99641 * 128.34892 * 9 7 2 14 14 O 1.42097 * 104.27520 * 153.92381 * 13 9 7 15 15 O 1.42097 * 104.27384 * 26.07083 * 13 9 7 16 16 C 1.81400 * 104.44863 * 269.99552 * 13 9 7 17 17 Cl 1.80294 * 115.55160 * 325.58632 * 16 13 9 18 18 C 1.53001 * 117.49274 * 111.25249 * 16 13 9 19 19 C 1.52995 * 117.49518 * 179.90944 * 16 13 9 20 20 H 0.97000 * 120.00000 * 356.34939 * 1 2 3 21 21 H 1.09000 * 115.55112 * 147.45495 * 10 9 7 22 22 H 1.08998 * 117.50189 * 0.02562 * 11 10 9 23 23 H 1.09001 * 117.49437 * 145.01933 * 11 10 9 24 24 H 1.08998 * 117.49774 * 214.97855 * 12 10 9 25 25 H 1.08994 * 117.49855 * 0.02562 * 12 10 9 26 26 H 1.09005 * 117.49353 * 214.99898 * 18 16 13 27 27 H 1.08994 * 117.50463 * 0.02648 * 18 16 13 28 28 H 1.08996 * 117.50448 * 359.97438 * 19 16 13 29 29 H 1.09004 * 117.49757 * 144.97771 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0644 -1.2171 -0.2353 9 7 1.3584 -2.3692 0.2966 10 6 0.5553 -2.4692 1.5178 11 6 0.4504 -1.2224 2.3983 12 6 1.2947 -2.4144 2.8561 13 16 1.4780 -3.6675 -0.7244 14 8 1.2580 -4.7938 0.1136 15 8 2.7209 -3.4790 -1.3869 16 6 0.0998 -3.4589 -1.8853 17 17 -1.3975 -2.7319 -1.1922 18 6 0.4441 -3.1183 -3.3366 19 6 -0.0687 -4.5155 -2.9789 20 1 -0.4850 0.8383 0.0535 21 1 -0.3207 -3.1146 1.4528 22 1 0.9785 -0.3277 2.0689 23 1 -0.4945 -1.0479 2.9130 24 1 0.9050 -3.0235 3.6717 25 1 2.3786 -2.3035 2.8280 26 1 -0.2347 -2.4547 -3.8724 27 1 1.4986 -3.0200 -3.5940 28 1 0.6487 -5.3357 -3.0012 29 1 -1.0849 -4.7714 -3.2791 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725700021.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:14 Heat of formation + Delta-G solvation = -26.011658 kcal Electronic energy + Delta-G solvation = -17290.246547 eV Core-core repulsion = 14368.380228 eV Total energy + Delta-G solvation = -2921.866319 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 265.033 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.94433 -38.13791 -37.60636 -36.51259 -36.00306 -34.70995 -32.80641 -26.77418 -23.81234 -23.63062 -22.89762 -22.41056 -20.07548 -18.91392 -18.43128 -17.81129 -16.81544 -16.54579 -15.95180 -15.53234 -15.19669 -14.50103 -14.03521 -13.64443 -13.19409 -13.11040 -12.93802 -12.82350 -12.66786 -12.54710 -12.53337 -12.34255 -12.26543 -11.97649 -11.94692 -11.46788 -10.98590 -10.78111 -10.64824 -10.44498 -9.26578 -8.28992 -6.11119 -0.24278 1.14321 1.52208 1.56790 1.66578 2.12346 2.33882 2.60062 2.92971 3.18944 3.41561 3.51225 3.67408 4.04958 4.21276 4.35218 4.44029 4.50512 4.55709 4.73225 4.81031 4.94186 5.04277 5.34667 5.44414 5.66985 5.85970 6.48626 6.84819 7.40839 8.62434 Molecular weight = 265.03amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.011300 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.778041 B = 2477.260075 C = 2714.218441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.030 3.970 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.263 4.263 8 H 0.086 0.914 9 N -0.768 5.768 10 C 0.103 3.897 11 C -0.139 4.139 12 C -0.202 4.202 13 S 2.488 3.512 14 O -1.020 7.020 15 O -1.002 7.002 16 C -0.582 4.582 17 Cl -0.082 7.082 18 C -0.119 4.119 19 C -0.136 4.136 20 H 0.281 0.719 21 H 0.100 0.900 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 0.356 -1.344 3.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.414 4.414 8 H 0.103 0.897 9 N -0.589 5.589 10 C -0.005 4.005 11 C -0.178 4.178 12 C -0.242 4.242 13 S 2.591 3.409 14 O -1.010 7.010 15 O -0.992 6.992 16 C -0.687 4.687 17 Cl -0.055 7.055 18 C -0.157 4.157 19 C -0.174 4.174 20 H 0.091 0.909 21 H 0.118 0.882 22 H 0.117 0.883 23 H 0.110 0.890 24 H 0.124 0.876 25 H 0.102 0.898 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.532 -0.519 -1.475 2.975 hybrid contribution -0.465 0.922 -0.454 1.128 sum -2.996 0.403 -1.929 3.586 Atomic orbital electron populations 1.70229 1.06737 1.29507 1.35839 1.26401 0.96014 1.02429 0.93905 0.85292 0.79325 0.77967 0.78544 1.19120 1.20170 1.18861 1.19675 0.92812 0.83682 1.45270 0.89683 1.52602 1.55274 1.27904 1.23087 1.20976 0.95469 1.02594 0.81508 1.23075 1.00495 0.93194 1.01021 1.23493 0.99175 1.03440 0.98070 1.14034 0.76584 0.76222 0.74074 1.93287 1.87487 1.55742 1.64466 1.93309 1.41623 1.86558 1.77680 1.36596 1.09983 1.12494 1.09657 1.98667 1.36805 1.84382 1.85623 1.23111 1.03722 0.98510 0.90325 1.23317 1.05353 0.92247 0.96478 0.90885 0.88215 0.88286 0.89048 0.87599 0.89798 0.86026 0.86898 0.86958 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -34.61 11.50 21.65 0.25 -34.36 15 2 C 0.03 1.29 3.14 84.86 0.27 1.56 15 3 Si 0.97 35.30 29.44 68.60 2.02 37.32 15 4 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 5 H -0.28 -10.06 7.11 99.48 0.71 -9.35 15 6 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 7 C -0.26 -12.64 8.24 84.04 0.69 -11.95 15 8 H 0.09 4.28 7.68 -2.91 -0.02 4.26 15 9 N -0.77 -36.67 2.56 -322.95 -0.83 -37.50 15 10 C 0.10 4.50 4.91 44.99 0.22 4.72 15 11 C -0.14 -5.43 8.32 30.62 0.25 -5.17 15 12 C -0.20 -7.72 10.38 30.62 0.32 -7.41 15 13 S 2.49 119.70 5.63 -56.49 -0.32 119.38 15 14 O -1.02 -52.91 17.26 -127.65 -2.20 -55.11 15 15 O -1.00 -52.41 16.38 -127.65 -2.09 -54.50 15 16 C -0.58 -23.56 3.30 30.59 0.10 -23.46 15 17 Cl -0.08 -3.31 28.03 -2.72 -0.08 -3.39 15 18 C -0.12 -4.08 10.01 30.62 0.31 -3.77 15 19 C -0.14 -4.34 10.14 30.62 0.31 -4.03 15 20 H 0.28 11.48 8.32 -92.71 -0.77 10.71 15 21 H 0.10 4.39 7.85 -2.39 -0.02 4.37 15 22 H 0.10 4.09 5.06 -2.39 -0.01 4.08 15 23 H 0.09 3.20 8.14 -2.39 -0.02 3.18 15 24 H 0.11 3.46 8.14 -2.39 -0.02 3.44 15 25 H 0.08 3.30 8.14 -2.39 -0.02 3.28 15 26 H 0.12 3.75 8.14 -2.38 -0.02 3.73 15 27 H 0.11 3.93 7.66 -2.39 -0.02 3.91 15 28 H 0.11 3.32 8.14 -2.39 -0.02 3.30 15 29 H 0.13 3.52 8.14 -2.38 -0.02 3.50 15 Total: -1.00 -57.37 275.98 0.38 -56.98 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.16 Total: 20.70 kcal Atomic # 6 Polarization: -51.99 SS G_CDS: 2.47 Total: -49.52 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -0.58 Total: -71.86 kcal Atomic # 8 Polarization: -105.32 SS G_CDS: -4.29 Total: -109.61 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.02 Total: 37.32 kcal Atomic # 16 Polarization: 119.70 SS G_CDS: -0.32 Total: 119.38 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.08 Total: -3.39 kcal Total: -57.37 0.38 -56.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725700021.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.969 kcal (2) G-P(sol) polarization free energy of solvation -57.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds