Wall clock time and date at job start Mon Mar 30 2020 05:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81397 * 103.00188 * 2 1 4 4 C 1.50693 * 109.47427 * 180.02562 * 3 2 1 5 5 O 1.21283 * 120.00141 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00311 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00212 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47151 * 180.02562 * 7 6 4 9 9 C 1.38632 * 119.75213 * 269.72575 * 8 7 6 10 10 C 1.37614 * 120.25123 * 179.71891 * 9 8 7 11 11 C 1.40719 * 119.74124 * 0.57305 * 10 9 8 12 12 C 1.41395 * 120.24246 * 179.67718 * 11 10 9 13 13 H 1.07998 * 119.99970 * 155.30784 * 12 11 10 14 14 C 1.39951 * 120.00207 * 335.31835 * 12 11 10 15 15 N 1.30818 * 119.99753 * 342.22830 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 162.22875 * 14 12 11 17 17 H 1.48500 * 109.47048 * 94.66426 * 16 14 12 18 18 H 1.48498 * 109.47252 * 214.66382 * 16 14 12 19 19 H 1.48496 * 109.47461 * 334.66371 * 16 14 12 20 20 C 1.40704 * 119.51466 * 359.70404 * 11 10 9 21 21 C 1.37620 * 119.74516 * 359.97438 * 20 11 10 22 22 H 1.08996 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47064 * 299.99945 * 1 2 3 24 24 H 1.08998 * 109.46968 * 60.00082 * 1 2 3 25 25 H 1.08998 * 109.47015 * 60.00068 * 3 2 1 26 26 H 1.09003 * 109.47372 * 300.00263 * 3 2 1 27 27 H 0.96998 * 119.99697 * 0.02562 * 6 4 3 28 28 H 1.08998 * 109.46977 * 60.00213 * 7 6 4 29 29 H 1.09001 * 109.47430 * 300.00116 * 7 6 4 30 30 H 1.08005 * 119.87401 * 359.97438 * 9 8 7 31 31 H 1.07997 * 120.13194 * 180.28480 * 10 9 8 32 32 H 0.97004 * 119.99893 * 180.02562 * 15 14 12 33 33 H 1.08007 * 120.13445 * 179.97438 * 20 11 10 34 34 H 1.08000 * 119.87742 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 8 4.4404 0.9621 -0.0015 6 7 4.2575 3.1731 -0.0013 7 6 5.7131 3.3382 -0.0013 8 6 6.0521 4.8066 -0.0014 9 6 6.2125 5.4755 -1.2051 10 6 6.5164 6.8176 -1.2172 11 6 6.6763 7.5082 -0.0016 12 6 6.9953 8.8857 -0.0017 13 1 6.7365 9.4999 0.8480 14 6 7.6463 9.4531 -1.1030 15 7 8.2653 8.6863 -1.9633 16 14 7.6313 11.3054 -1.3443 17 1 8.8619 11.8913 -0.7548 18 1 7.5819 11.6151 -2.7958 19 1 6.4383 11.8823 -0.6743 20 6 6.5169 6.8177 1.2140 21 6 6.2064 5.4771 1.2022 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8032 2.2371 0.8900 26 1 1.8031 2.2372 -0.8900 27 1 3.6809 3.9531 -0.0009 28 1 6.1321 2.8682 -0.8911 29 1 6.1321 2.8690 0.8889 30 1 6.0944 4.9422 -2.1368 31 1 6.6364 7.3378 -2.1560 32 1 8.7168 9.0797 -2.7265 33 1 6.6378 7.3378 2.1529 34 1 6.0832 4.9451 2.1340 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580553356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:14 Heat of formation + Delta-G solvation = -28.931723 kcal Electronic energy + Delta-G solvation = -16635.127711 eV Core-core repulsion = 13851.400713 eV Total energy + Delta-G solvation = -2783.726998 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40622 -37.69812 -34.77911 -33.48460 -31.04870 -29.76047 -29.37730 -28.90275 -26.62008 -23.65660 -21.12191 -20.45139 -20.15553 -17.42882 -17.21076 -16.50381 -15.66214 -15.47786 -15.22873 -14.27263 -14.12593 -13.87350 -13.85961 -13.63371 -13.32267 -12.78342 -12.59437 -12.39280 -12.07744 -11.87390 -11.63201 -11.23172 -11.12667 -10.66559 -10.59108 -10.12692 -9.88412 -9.71186 -9.52733 -9.25581 -8.75125 -7.78921 -7.61277 -7.49293 -6.90280 -4.50025 1.34173 2.39266 2.54341 2.73865 2.94235 2.99121 2.99817 3.06090 3.61274 3.82617 4.48567 4.84384 4.86213 4.90098 4.93044 5.10241 5.45798 5.55558 5.76786 5.87156 6.20539 6.25205 6.31275 6.73587 6.82965 6.94323 7.14194 7.22534 7.47347 7.62680 7.81844 7.91777 7.97381 8.15582 8.37821 8.50110 8.75060 8.82693 10.03821 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.045539 B = 0.003152 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.713629 B = 8882.186633 C = 9009.619743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.188 6.188 3 C -0.127 4.127 4 C 0.521 3.479 5 O -0.531 6.531 6 N -0.713 5.713 7 C 0.185 3.815 8 C -0.247 4.247 9 C -0.080 4.080 10 C -0.170 4.170 11 C 0.117 3.883 12 C -0.458 4.458 13 H 0.079 0.921 14 C 0.075 3.925 15 N -0.786 5.786 16 Si 0.909 3.091 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.260 1.260 20 C -0.230 4.230 21 C -0.069 4.069 22 H 0.102 0.898 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.401 0.599 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.283 0.717 33 H 0.093 0.907 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.695 -6.898 1.197 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.036 5.964 3 C -0.279 4.279 4 C 0.305 3.695 5 O -0.408 6.408 6 N -0.364 5.364 7 C 0.064 3.936 8 C -0.249 4.249 9 C -0.099 4.099 10 C -0.189 4.189 11 C 0.114 3.886 12 C -0.487 4.487 13 H 0.097 0.903 14 C -0.144 4.144 15 N -0.411 5.411 16 Si 0.733 3.267 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.249 4.249 21 C -0.088 4.088 22 H 0.121 0.879 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.235 0.765 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.324 -8.457 0.977 13.381 hybrid contribution -1.044 2.395 -0.186 2.619 sum -11.368 -6.062 0.792 12.907 Atomic orbital electron populations 1.23527 0.96246 1.06559 1.04812 1.87509 1.04120 1.06761 1.98011 1.23570 0.98531 0.98758 1.06993 1.19663 0.88476 0.84075 0.77281 1.90726 1.61998 1.38627 1.49499 1.46459 1.09270 1.06881 1.73826 1.19979 0.78090 0.94634 1.00937 1.18964 1.18537 0.93517 0.93870 1.20561 0.99295 0.94894 0.95195 1.21308 1.05442 0.93397 0.98757 1.17673 0.87036 0.92932 0.90939 1.19661 1.32780 0.94142 1.02118 0.90258 1.25963 0.92810 1.00840 0.94740 1.69821 1.22430 1.37899 1.10916 0.86288 0.79800 0.82149 0.78490 1.19449 1.19929 1.18341 1.20969 1.12973 0.93924 0.97070 1.20413 0.98650 0.94441 0.95289 0.87914 0.90578 0.90565 0.87363 0.87348 0.76472 0.92163 0.92252 0.89371 0.86410 0.90639 0.88873 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 10.76 101.05 1.09 0.02 16 2 S -0.19 -2.30 21.52 -107.50 -2.31 -4.61 16 3 C -0.13 -1.41 6.42 36.00 0.23 -1.18 16 4 C 0.52 7.97 7.85 -10.99 -0.09 7.88 16 5 O -0.53 -10.27 15.86 5.56 0.09 -10.18 16 6 N -0.71 -10.75 5.55 -61.48 -0.34 -11.09 16 7 C 0.19 3.29 5.79 -5.20 -0.03 3.26 16 8 C -0.25 -5.00 5.27 -104.33 -0.55 -5.55 16 9 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 10 C -0.17 -4.16 8.70 -38.87 -0.34 -4.50 16 11 C 0.12 2.96 5.57 -106.83 -0.60 2.36 16 12 C -0.46 -11.59 9.05 -37.74 -0.34 -11.93 16 13 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 14 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 15 N -0.79 -19.53 10.97 55.55 0.61 -18.92 16 16 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 C -0.23 -5.33 9.80 -38.88 -0.38 -5.71 16 21 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 22 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 24 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.11 0.97 8.14 -51.92 -0.42 0.54 16 26 H 0.11 0.98 8.14 -51.92 -0.42 0.55 16 27 H 0.40 5.32 8.46 -40.82 -0.35 4.97 16 28 H 0.06 1.10 8.08 -51.93 -0.42 0.69 16 29 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.12 3.00 6.18 -52.49 -0.32 2.68 16 32 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 33 H 0.09 2.05 8.06 -52.48 -0.42 1.62 16 34 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -28.47 310.38 -8.61 -37.08 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.44 Total: 7.87 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.86 Total: -17.60 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.27 Total: -30.02 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.31 Total: -4.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.47 -8.61 -37.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580553356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.152 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds