Wall clock time and date at job start Mon Mar 30 2020 05:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81397 * 103.00188 * 2 1 4 4 C 1.50693 * 109.47427 * 180.02562 * 3 2 1 5 5 O 1.21283 * 120.00141 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00311 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00212 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47151 * 180.02562 * 7 6 4 9 9 C 1.38632 * 119.75213 * 269.72575 * 8 7 6 10 10 C 1.37614 * 120.25123 * 179.71891 * 9 8 7 11 11 C 1.40719 * 119.74124 * 0.57305 * 10 9 8 12 12 C 1.41395 * 120.24246 * 179.67718 * 11 10 9 13 13 H 1.07998 * 119.99970 * 155.30784 * 12 11 10 14 14 C 1.39951 * 120.00207 * 335.31835 * 12 11 10 15 15 N 1.30818 * 119.99753 * 342.22830 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 162.22875 * 14 12 11 17 17 H 1.48500 * 109.47048 * 94.66426 * 16 14 12 18 18 H 1.48498 * 109.47252 * 214.66382 * 16 14 12 19 19 H 1.48496 * 109.47461 * 334.66371 * 16 14 12 20 20 C 1.40704 * 119.51466 * 359.70404 * 11 10 9 21 21 C 1.37620 * 119.74516 * 359.97438 * 20 11 10 22 22 H 1.08996 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47064 * 299.99945 * 1 2 3 24 24 H 1.08998 * 109.46968 * 60.00082 * 1 2 3 25 25 H 1.08998 * 109.47015 * 60.00068 * 3 2 1 26 26 H 1.09003 * 109.47372 * 300.00263 * 3 2 1 27 27 H 0.96998 * 119.99697 * 0.02562 * 6 4 3 28 28 H 1.08998 * 109.46977 * 60.00213 * 7 6 4 29 29 H 1.09001 * 109.47430 * 300.00116 * 7 6 4 30 30 H 1.08005 * 119.87401 * 359.97438 * 9 8 7 31 31 H 1.07997 * 120.13194 * 180.28480 * 10 9 8 32 32 H 0.97004 * 119.99893 * 180.02562 * 15 14 12 33 33 H 1.08007 * 120.13445 * 179.97438 * 20 11 10 34 34 H 1.08000 * 119.87742 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 8 4.4404 0.9621 -0.0015 6 7 4.2575 3.1731 -0.0013 7 6 5.7131 3.3382 -0.0013 8 6 6.0521 4.8066 -0.0014 9 6 6.2125 5.4755 -1.2051 10 6 6.5164 6.8176 -1.2172 11 6 6.6763 7.5082 -0.0016 12 6 6.9953 8.8857 -0.0017 13 1 6.7365 9.4999 0.8480 14 6 7.6463 9.4531 -1.1030 15 7 8.2653 8.6863 -1.9633 16 14 7.6313 11.3054 -1.3443 17 1 8.8619 11.8913 -0.7548 18 1 7.5819 11.6151 -2.7958 19 1 6.4383 11.8823 -0.6743 20 6 6.5169 6.8177 1.2140 21 6 6.2064 5.4771 1.2022 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8032 2.2371 0.8900 26 1 1.8031 2.2372 -0.8900 27 1 3.6809 3.9531 -0.0009 28 1 6.1321 2.8682 -0.8911 29 1 6.1321 2.8690 0.8889 30 1 6.0944 4.9422 -2.1368 31 1 6.6364 7.3378 -2.1560 32 1 8.7168 9.0797 -2.7265 33 1 6.6378 7.3378 2.1529 34 1 6.0832 4.9451 2.1340 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580553356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:14 Heat of formation + Delta-G solvation = -45.481591 kcal Electronic energy + Delta-G solvation = -16635.845368 eV Core-core repulsion = 13851.400713 eV Total energy + Delta-G solvation = -2784.444654 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71843 -39.41488 -36.34225 -35.09997 -32.48145 -31.24782 -30.91393 -29.59857 -28.20943 -25.29526 -22.91025 -21.87730 -21.68603 -19.24592 -18.41053 -17.61801 -17.19588 -16.74965 -16.48546 -15.82938 -15.57545 -15.49890 -14.68528 -14.56468 -14.55321 -14.23828 -13.86193 -13.80582 -13.38815 -13.20886 -13.19033 -12.88761 -12.73133 -12.40545 -12.16804 -11.50894 -11.31457 -11.15554 -10.99168 -10.91754 -10.08860 -9.40529 -9.29301 -8.69411 -8.67760 -6.37659 0.49643 0.86396 1.12899 1.38821 1.46364 1.53932 1.56042 1.65830 2.19344 2.33345 2.75911 3.68709 3.80251 4.07993 4.17604 4.28764 4.30495 4.39693 4.40663 4.51588 4.64909 4.79837 4.94037 5.04022 5.14100 5.34035 5.40894 5.44485 5.67784 5.90122 6.07923 6.19083 6.35366 6.55198 6.67119 6.91046 6.99785 7.19352 8.28941 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.045539 B = 0.003152 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.713629 B = 8882.186633 C = 9009.619743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.269 6.269 3 C -0.109 4.109 4 C 0.520 3.480 5 O -0.574 6.574 6 N -0.706 5.706 7 C 0.194 3.806 8 C -0.228 4.228 9 C -0.082 4.082 10 C -0.191 4.191 11 C 0.086 3.914 12 C -0.496 4.496 13 H 0.077 0.923 14 C 0.035 3.965 15 N -0.821 5.821 16 Si 0.981 3.019 17 H -0.264 1.264 18 H -0.266 1.266 19 H -0.257 1.257 20 C -0.243 4.243 21 C -0.067 4.067 22 H 0.112 0.888 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.413 0.587 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.289 0.711 33 H 0.098 0.902 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 -6.965 1.512 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.045 6.045 3 C -0.259 4.259 4 C 0.306 3.694 5 O -0.454 6.454 6 N -0.358 5.358 7 C 0.071 3.929 8 C -0.229 4.229 9 C -0.101 4.101 10 C -0.211 4.211 11 C 0.084 3.916 12 C -0.525 4.525 13 H 0.096 0.904 14 C -0.180 4.180 15 N -0.447 5.447 16 Si 0.802 3.198 17 H -0.189 1.189 18 H -0.191 1.191 19 H -0.181 1.181 20 C -0.262 4.262 21 C -0.086 4.086 22 H 0.131 0.869 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.249 0.751 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.200 -8.520 1.301 14.937 hybrid contribution -0.542 2.227 -0.244 2.305 sum -12.741 -6.293 1.056 14.250 Atomic orbital electron populations 1.23551 0.91334 1.07725 1.06284 1.87802 1.09580 1.08814 1.98276 1.23463 0.95049 0.97846 1.09564 1.20297 0.90248 0.83054 0.75818 1.90716 1.63511 1.39937 1.51265 1.46196 1.08168 1.07662 1.73748 1.19729 0.79898 0.92431 1.00814 1.19171 1.16149 0.94563 0.93060 1.20753 0.98578 0.94071 0.96661 1.21258 1.07260 0.94583 0.97999 1.18008 0.88053 0.93624 0.91945 1.19901 1.34615 0.94739 1.03248 0.90437 1.26780 0.91811 1.05443 0.93984 1.69871 1.23243 1.39920 1.11630 0.85202 0.79814 0.76153 0.78640 1.18854 1.19086 1.18082 1.21160 1.13357 0.95031 0.96698 1.20684 0.97476 0.93693 0.96712 0.86913 0.89022 0.89094 0.84571 0.84736 0.75108 0.92708 0.92185 0.87768 0.88181 0.90012 0.88332 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 10.76 113.37 1.22 -0.20 16 2 S -0.27 -6.11 21.52 -56.49 -1.22 -7.32 16 3 C -0.11 -2.09 6.42 71.23 0.46 -1.63 16 4 C 0.52 14.85 7.85 87.65 0.69 15.54 16 5 O -0.57 -21.72 15.86 -3.04 -0.05 -21.77 16 6 N -0.71 -19.61 5.55 -466.79 -2.59 -22.20 16 7 C 0.19 6.54 5.79 85.63 0.50 7.04 16 8 C -0.23 -8.88 5.27 -19.67 -0.10 -8.99 16 9 C -0.08 -3.54 9.67 22.22 0.21 -3.32 16 10 C -0.19 -9.60 8.70 22.73 0.20 -9.40 16 11 C 0.09 4.46 5.57 -21.29 -0.12 4.34 16 12 C -0.50 -25.79 9.05 23.46 0.21 -25.58 16 13 H 0.08 3.88 7.91 -2.91 -0.02 3.85 16 14 C 0.04 1.73 5.14 85.26 0.44 2.17 16 15 N -0.82 -41.84 10.97 21.83 0.24 -41.60 16 16 Si 0.98 36.80 29.59 68.60 2.03 38.83 16 17 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 18 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 19 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 20 C -0.24 -11.26 9.80 22.73 0.22 -11.04 16 21 C -0.07 -2.70 9.67 22.22 0.21 -2.49 16 22 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.41 9.73 8.46 -92.71 -0.78 8.95 16 28 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 29 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 30 H 0.10 4.10 8.06 -2.91 -0.02 4.07 16 31 H 0.10 5.30 6.18 -2.91 -0.02 5.29 16 32 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 33 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -63.49 310.38 2.87 -60.62 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.32 Total: 27.02 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.14 Total: -33.57 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -2.35 Total: -63.80 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Atomic # 16 Polarization: -6.11 SS G_CDS: -1.22 Total: -7.32 kcal Total: -63.49 2.87 -60.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580553356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.138 kcal (2) G-P(sol) polarization free energy of solvation -63.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds