Wall clock time and date at job start Mon Mar 30 2020 05:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99662 * 2 1 4 4 C 1.53004 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47275 * 184.99667 * 4 3 2 6 6 N 1.46500 * 109.47241 * 64.99861 * 4 3 2 7 7 C 1.38851 * 120.00238 * 155.00075 * 6 4 3 8 8 C 1.39567 * 119.83862 * 0.26710 * 7 6 4 9 9 C 1.36343 * 120.15900 * 180.27872 * 8 7 6 10 10 C 1.40889 * 119.83518 * 359.47313 * 9 8 7 11 11 C 1.41138 * 120.15317 * 180.27317 * 10 9 8 12 12 H 1.08008 * 119.99509 * 154.53670 * 11 10 9 13 13 C 1.39864 * 120.00201 * 334.53929 * 11 10 9 14 14 N 1.30904 * 120.00281 * 343.05010 * 13 11 10 15 15 Si 1.86802 * 119.99788 * 163.05125 * 13 11 10 16 16 H 1.48499 * 109.47442 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47297 * 120.00302 * 15 13 11 18 18 H 1.48506 * 109.47025 * 239.99943 * 15 13 11 19 19 C 1.40885 * 119.68814 * 0.25981 * 10 9 8 20 20 C 1.36345 * 119.83707 * 359.97438 * 19 10 9 21 21 C 1.50702 * 109.46975 * 304.99671 * 4 3 2 22 22 O 1.20823 * 119.99596 * 119.99997 * 21 4 3 23 23 O 1.34228 * 120.00073 * 300.00051 * 21 4 3 24 24 H 1.08996 * 109.47386 * 300.00406 * 1 2 3 25 25 H 1.08998 * 109.46862 * 60.00369 * 1 2 3 26 26 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47378 * 59.99985 * 3 2 1 28 28 H 1.09005 * 109.46953 * 299.99330 * 3 2 1 29 29 H 0.97003 * 119.99535 * 334.99466 * 6 4 3 30 30 H 1.07999 * 119.92727 * 0.02985 * 8 7 6 31 31 H 1.08005 * 120.08537 * 179.75484 * 9 8 7 32 32 H 0.96996 * 119.99982 * 179.97438 * 14 13 11 33 33 H 1.07999 * 120.07984 * 180.02562 * 19 10 9 34 34 H 1.08001 * 119.91550 * 180.02562 * 20 19 10 35 35 H 0.96693 * 117.00222 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1765 0.0901 6 7 3.9767 0.5640 -1.2508 7 6 5.2585 0.8009 -1.7291 8 6 6.1257 1.6265 -1.0121 9 6 7.3839 1.8681 -1.4786 10 6 7.8115 1.2732 -2.6820 11 6 9.1144 1.5141 -3.1681 12 1 9.5919 0.7919 -3.8139 13 6 9.7873 2.6879 -2.8135 14 7 9.1206 3.7015 -2.3218 15 14 11.6373 2.8091 -3.0416 16 1 12.1505 1.5368 -3.6099 17 1 11.9497 3.9271 -3.9676 18 1 12.2827 3.0596 -1.7277 19 6 6.9325 0.4364 -3.3976 20 6 5.6755 0.2075 -2.9215 21 6 3.9714 0.3329 1.1649 22 8 4.5874 -0.6879 0.9693 23 8 3.6752 0.7083 2.4192 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.3733 -0.0126 -1.7453 30 1 5.7982 2.0783 -0.0874 31 1 8.0526 2.5104 -0.9247 32 1 9.5873 4.5153 -2.0756 33 1 7.2539 -0.0232 -4.3205 34 1 5.0008 -0.4340 -3.4688 35 1 3.9756 0.1295 3.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234758671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:13 Heat of formation + Delta-G solvation = -106.995189 kcal Electronic energy + Delta-G solvation = -19801.297784 eV Core-core repulsion = 16571.432829 eV Total energy + Delta-G solvation = -3229.864955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13308 -38.15401 -37.67780 -35.85348 -34.92387 -33.11454 -30.47186 -29.48316 -27.98419 -26.61308 -24.38304 -24.22033 -21.59591 -20.81164 -19.66437 -17.86009 -17.21692 -17.00081 -16.65166 -16.13823 -15.71675 -15.10969 -15.05853 -14.89603 -14.12503 -13.77857 -13.04017 -12.83986 -12.65597 -12.37062 -12.16816 -11.83117 -11.62735 -11.54201 -11.30336 -11.13378 -11.03249 -10.83478 -10.55081 -10.24690 -9.85769 -9.69842 -9.31032 -9.26927 -8.64695 -7.49578 -6.64828 -6.44758 -4.04846 2.59768 2.85758 3.10548 3.14432 3.16538 3.22272 3.45947 3.56215 4.06043 4.10479 4.75885 4.79711 5.11509 5.12386 5.20727 5.29783 5.39778 5.49051 5.69764 5.84729 6.22371 6.30380 6.78165 6.81273 6.90161 6.92207 7.19425 7.35449 7.49666 7.68233 7.81215 8.14089 8.18985 8.29200 8.44697 8.62795 8.77386 9.06112 9.13835 10.37746 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.004419 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.230101 B = 6335.365155 C = 6653.803876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.060 3.940 4 C 0.181 3.819 5 H 0.124 0.876 6 N -0.726 5.726 7 C 0.088 3.912 8 C -0.161 4.161 9 C -0.123 4.123 10 C 0.078 3.922 11 C -0.466 4.466 12 H 0.074 0.926 13 C 0.074 3.926 14 N -0.808 5.808 15 Si 0.903 3.097 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.274 1.274 19 C -0.186 4.186 20 C -0.148 4.148 21 C 0.456 3.544 22 O -0.492 6.492 23 O -0.528 6.528 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.397 0.603 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.276 0.724 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.594 -1.167 6.408 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.018 4.018 4 C 0.070 3.930 5 H 0.141 0.859 6 N -0.361 5.361 7 C -0.007 4.007 8 C -0.183 4.183 9 C -0.143 4.143 10 C 0.075 3.925 11 C -0.497 4.497 12 H 0.092 0.908 13 C -0.141 4.141 14 N -0.436 5.436 15 Si 0.728 3.272 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.200 1.200 19 C -0.206 4.206 20 C -0.169 4.169 21 C 0.294 3.706 22 O -0.376 6.376 23 O -0.339 6.339 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.231 0.769 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -13.347 -1.024 6.216 14.759 hybrid contribution 0.662 -0.258 0.332 0.784 sum -12.685 -1.282 6.548 14.332 Atomic orbital electron populations 1.22738 0.80751 1.02818 1.00041 1.87950 1.19970 1.27350 1.95458 1.22816 0.91098 0.85651 1.02186 1.20241 0.93050 0.96830 0.82848 0.85856 1.43576 1.14229 1.56723 1.21575 1.17286 0.85081 1.02150 0.96232 1.20023 0.95742 1.02968 0.99549 1.20901 0.94698 1.02224 0.96489 1.17512 0.92790 0.91394 0.90792 1.19420 0.99295 1.03587 1.27354 0.90826 1.25798 1.00055 0.94950 0.93255 1.69853 1.37035 1.02880 1.33803 0.86351 0.83196 0.79022 0.78602 1.18615 1.20255 1.19977 1.20564 0.93547 1.06382 1.00156 1.19779 0.97098 1.03528 0.96524 1.24833 0.76290 0.85841 0.83676 1.90705 1.36509 1.25133 1.85280 1.84543 1.75719 1.56161 1.17504 0.94000 0.93844 0.89659 0.91046 0.91032 0.76907 0.89964 0.86338 0.91377 0.88858 0.89338 0.74147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.89 9.91 -35.23 -0.35 -5.24 16 3 C 0.06 0.69 5.61 37.16 0.21 0.90 16 4 C 0.18 2.77 2.59 -69.08 -0.18 2.59 16 5 H 0.12 1.82 6.46 -51.93 -0.34 1.48 16 6 N -0.73 -13.16 4.71 -53.16 -0.25 -13.42 16 7 C 0.09 1.98 6.55 -83.69 -0.55 1.43 16 8 C -0.16 -3.84 9.06 -39.77 -0.36 -4.20 16 9 C -0.12 -3.28 8.63 -39.26 -0.34 -3.62 16 10 C 0.08 2.14 5.57 -106.79 -0.59 1.55 16 11 C -0.47 -12.80 9.03 -37.87 -0.34 -13.14 16 12 H 0.07 1.96 7.90 -52.48 -0.41 1.55 16 13 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 14 N -0.81 -21.48 10.96 55.54 0.61 -20.87 16 15 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 16 16 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 C -0.19 -4.70 9.74 -39.26 -0.38 -5.09 16 20 C -0.15 -3.41 9.82 -39.77 -0.39 -3.80 16 21 C 0.46 7.60 7.01 36.01 0.25 7.86 16 22 O -0.49 -10.29 17.11 -18.75 -0.32 -10.61 16 23 O -0.53 -6.76 13.35 -39.25 -0.52 -7.29 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.40 6.74 8.38 -40.82 -0.34 6.40 16 30 H 0.08 1.77 6.14 -52.49 -0.32 1.45 16 31 H 0.12 3.26 6.19 -52.48 -0.32 2.94 16 32 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 33 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.40 3.61 9.10 45.56 0.41 4.03 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -32.53 306.02 -6.32 -38.85 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.42 Total: 11.88 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -1.65 Total: -12.29 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.36 Total: -34.28 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.19 Total: -23.13 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.53 -6.32 -38.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234758671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.142 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds