Wall clock time and date at job start Mon Mar 30 2020 05:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99662 * 2 1 4 4 C 1.53004 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47275 * 184.99667 * 4 3 2 6 6 N 1.46500 * 109.47241 * 64.99861 * 4 3 2 7 7 C 1.38851 * 120.00238 * 155.00075 * 6 4 3 8 8 C 1.39567 * 119.83862 * 0.26710 * 7 6 4 9 9 C 1.36343 * 120.15900 * 180.27872 * 8 7 6 10 10 C 1.40889 * 119.83518 * 359.47313 * 9 8 7 11 11 C 1.41138 * 120.15317 * 180.27317 * 10 9 8 12 12 H 1.08008 * 119.99509 * 154.53670 * 11 10 9 13 13 C 1.39864 * 120.00201 * 334.53929 * 11 10 9 14 14 N 1.30904 * 120.00281 * 343.05010 * 13 11 10 15 15 Si 1.86802 * 119.99788 * 163.05125 * 13 11 10 16 16 H 1.48499 * 109.47442 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47297 * 120.00302 * 15 13 11 18 18 H 1.48506 * 109.47025 * 239.99943 * 15 13 11 19 19 C 1.40885 * 119.68814 * 0.25981 * 10 9 8 20 20 C 1.36345 * 119.83707 * 359.97438 * 19 10 9 21 21 C 1.50702 * 109.46975 * 304.99671 * 4 3 2 22 22 O 1.20823 * 119.99596 * 119.99997 * 21 4 3 23 23 O 1.34228 * 120.00073 * 300.00051 * 21 4 3 24 24 H 1.08996 * 109.47386 * 300.00406 * 1 2 3 25 25 H 1.08998 * 109.46862 * 60.00369 * 1 2 3 26 26 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47378 * 59.99985 * 3 2 1 28 28 H 1.09005 * 109.46953 * 299.99330 * 3 2 1 29 29 H 0.97003 * 119.99535 * 334.99466 * 6 4 3 30 30 H 1.07999 * 119.92727 * 0.02985 * 8 7 6 31 31 H 1.08005 * 120.08537 * 179.75484 * 9 8 7 32 32 H 0.96996 * 119.99982 * 179.97438 * 14 13 11 33 33 H 1.07999 * 120.07984 * 180.02562 * 19 10 9 34 34 H 1.08001 * 119.91550 * 180.02562 * 20 19 10 35 35 H 0.96693 * 117.00222 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1765 0.0901 6 7 3.9767 0.5640 -1.2508 7 6 5.2585 0.8009 -1.7291 8 6 6.1257 1.6265 -1.0121 9 6 7.3839 1.8681 -1.4786 10 6 7.8115 1.2732 -2.6820 11 6 9.1144 1.5141 -3.1681 12 1 9.5919 0.7919 -3.8139 13 6 9.7873 2.6879 -2.8135 14 7 9.1206 3.7015 -2.3218 15 14 11.6373 2.8091 -3.0416 16 1 12.1505 1.5368 -3.6099 17 1 11.9497 3.9271 -3.9676 18 1 12.2827 3.0596 -1.7277 19 6 6.9325 0.4364 -3.3976 20 6 5.6755 0.2075 -2.9215 21 6 3.9714 0.3329 1.1649 22 8 4.5874 -0.6879 0.9693 23 8 3.6752 0.7083 2.4192 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.3733 -0.0126 -1.7453 30 1 5.7982 2.0783 -0.0874 31 1 8.0526 2.5104 -0.9247 32 1 9.5873 4.5153 -2.0756 33 1 7.2539 -0.0232 -4.3205 34 1 5.0008 -0.4340 -3.4688 35 1 3.9756 0.1295 3.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234758671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:12 Heat of formation + Delta-G solvation = -130.112032 kcal Electronic energy + Delta-G solvation = -19802.300206 eV Core-core repulsion = 16571.432829 eV Total energy + Delta-G solvation = -3230.867377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42923 -39.68564 -38.84822 -37.16160 -36.47859 -34.88321 -31.97254 -31.38984 -29.62655 -27.44489 -26.11547 -25.37464 -23.26042 -22.55532 -21.21884 -19.19129 -19.06426 -18.28514 -17.96334 -17.25626 -16.87626 -16.70507 -16.33501 -16.20522 -15.67336 -15.11048 -14.57155 -14.51978 -14.21055 -13.88146 -13.65101 -13.29943 -13.11721 -12.82290 -12.73868 -12.65079 -12.39712 -12.32552 -12.25169 -11.69525 -11.57609 -11.21382 -11.08375 -10.66283 -10.43864 -9.42876 -8.56071 -8.26446 -6.04079 1.06357 1.16173 1.31570 1.40680 1.53616 1.55693 2.09474 2.27771 2.66404 2.77874 2.86552 3.76967 3.84114 4.15099 4.24431 4.40871 4.44686 4.48669 4.56461 4.60445 4.69059 4.89829 4.99174 5.07617 5.25261 5.43196 5.61347 5.67549 5.76298 5.91374 6.13534 6.16972 6.34283 6.58916 6.79307 7.02058 7.07269 7.09704 7.21874 8.48152 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.004419 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.230101 B = 6335.365155 C = 6653.803876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.068 3.932 4 C 0.171 3.829 5 H 0.131 0.869 6 N -0.719 5.719 7 C 0.109 3.891 8 C -0.170 4.170 9 C -0.143 4.143 10 C 0.039 3.961 11 C -0.506 4.506 12 H 0.067 0.933 13 C 0.033 3.967 14 N -0.839 5.839 15 Si 0.977 3.023 16 H -0.262 1.262 17 H -0.266 1.266 18 H -0.267 1.267 19 C -0.196 4.196 20 C -0.158 4.158 21 C 0.461 3.539 22 O -0.543 6.543 23 O -0.512 6.512 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.404 0.596 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.283 0.717 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 -0.873 7.132 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.009 4.009 4 C 0.061 3.939 5 H 0.148 0.852 6 N -0.354 5.354 7 C 0.011 3.989 8 C -0.192 4.192 9 C -0.163 4.163 10 C 0.037 3.963 11 C -0.537 4.537 12 H 0.086 0.914 13 C -0.179 4.179 14 N -0.467 5.467 15 Si 0.798 3.202 16 H -0.186 1.186 17 H -0.191 1.191 18 H -0.192 1.192 19 C -0.216 4.216 20 C -0.180 4.180 21 C 0.302 3.698 22 O -0.431 6.431 23 O -0.324 6.324 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.240 0.760 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -15.018 -0.725 6.983 16.578 hybrid contribution 0.915 -0.398 0.224 1.022 sum -14.103 -1.123 7.207 15.878 Atomic orbital electron populations 1.22929 0.78711 1.03727 1.01415 1.87906 1.22198 1.27898 1.95754 1.22804 0.87998 0.85816 1.04301 1.20603 0.95997 0.96272 0.81039 0.85155 1.43574 1.12522 1.56563 1.22752 1.17387 0.86345 0.99904 0.95273 1.20183 0.95092 1.03451 1.00473 1.20842 0.95820 1.02976 0.96705 1.17837 0.93691 0.93023 0.91788 1.19629 1.00349 1.04634 1.29074 0.91446 1.26595 1.04633 0.94041 0.92622 1.69904 1.38909 1.03421 1.34505 0.85245 0.77010 0.79056 0.78849 1.18614 1.19114 1.19183 1.20774 0.94356 1.06107 1.00397 1.20089 0.96839 1.03904 0.97125 1.24959 0.74997 0.84973 0.84908 1.90699 1.38936 1.27351 1.86147 1.84477 1.74954 1.56142 1.16853 0.92488 0.92558 0.89121 0.88464 0.89316 0.76042 0.87978 0.88154 0.90669 0.88307 0.86442 0.71918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.29 9.91 -148.98 -1.48 -10.77 16 3 C 0.07 1.32 5.61 71.98 0.40 1.73 16 4 C 0.17 4.79 2.59 44.25 0.11 4.90 16 5 H 0.13 3.51 6.46 -2.39 -0.02 3.49 16 6 N -0.72 -24.70 4.71 -322.09 -1.52 -26.22 16 7 C 0.11 4.78 6.55 38.67 0.25 5.03 16 8 C -0.17 -8.11 9.06 22.15 0.20 -7.91 16 9 C -0.14 -7.88 8.63 22.48 0.19 -7.68 16 10 C 0.04 2.24 5.57 -21.27 -0.12 2.12 16 11 C -0.51 -28.89 9.03 23.38 0.21 -28.68 16 12 H 0.07 3.76 7.90 -2.91 -0.02 3.73 16 13 C 0.03 1.76 5.15 85.22 0.44 2.20 16 14 N -0.84 -45.77 10.96 21.82 0.24 -45.53 16 15 Si 0.98 40.49 29.59 68.60 2.03 42.52 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 C -0.20 -10.09 9.74 22.48 0.22 -9.87 16 20 C -0.16 -7.18 9.82 22.15 0.22 -6.97 16 21 C 0.46 14.48 7.01 71.24 0.50 14.98 16 22 O -0.54 -22.20 17.11 21.97 0.38 -21.82 16 23 O -0.51 -11.70 13.35 -51.40 -0.69 -12.39 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.40 12.81 8.38 -92.71 -0.78 12.03 16 30 H 0.10 4.33 6.14 -2.91 -0.02 4.31 16 31 H 0.10 5.77 6.19 -2.91 -0.02 5.76 16 32 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 33 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.42 6.47 9.10 -74.06 -0.67 5.80 16 Total: -1.00 -72.18 306.02 2.53 -69.65 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -0.32 Total: 33.06 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 3.88 Total: -28.51 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -1.28 Total: -71.74 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.79 Total: -44.98 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -72.18 2.53 -69.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234758671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.461 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds