Wall clock time and date at job start Mon Mar 30 2020 05:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35774 * 117.00078 * 2 1 4 4 C 1.38892 * 119.60330 * 180.02562 * 3 2 1 5 5 C 1.38345 * 119.18738 * 179.97438 * 4 3 2 6 6 C 1.39376 * 118.42274 * 359.97438 * 5 4 3 7 7 N 1.39987 * 120.42460 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99435 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.46484 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00098 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99683 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99782 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46990 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00114 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99942 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99701 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00151 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47297 * 89.99735 * 17 15 13 19 19 H 1.48503 * 109.47101 * 209.99992 * 17 15 13 20 20 H 1.48501 * 109.47141 * 330.00107 * 17 15 13 21 21 C 1.38676 * 119.14544 * 359.97438 * 6 5 4 22 22 N 1.31966 * 120.73049 * 0.02562 * 21 6 5 23 23 H 1.09004 * 109.46347 * 300.00196 * 1 2 3 24 24 H 1.08995 * 109.46615 * 59.99849 * 1 2 3 25 25 H 1.08995 * 109.46905 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.40513 * 0.24659 * 4 3 2 27 27 H 1.08003 * 120.78647 * 180.02562 * 5 4 3 28 28 H 0.96991 * 120.00237 * 359.97438 * 7 6 5 29 29 H 1.08996 * 109.47179 * 299.99009 * 8 7 6 30 30 H 1.09002 * 109.47239 * 59.99827 * 8 7 6 31 31 H 0.96999 * 119.99945 * 0.02562 * 11 9 8 32 32 H 1.08999 * 109.47517 * 299.99793 * 12 11 9 33 33 H 1.09002 * 109.47014 * 60.00439 * 12 11 9 34 34 H 0.97006 * 119.99882 * 180.02562 * 16 15 13 35 35 H 1.08001 * 119.63207 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 3.4330 1.2728 -0.0005 5 6 4.0521 2.5100 -0.0011 6 6 3.2528 3.6518 -0.0016 7 7 3.8352 4.9248 -0.0027 8 6 2.9860 6.1186 -0.0038 9 6 3.8529 7.3515 -0.0042 10 8 5.0608 7.2434 -0.0032 11 7 3.2856 8.5741 -0.0057 12 6 4.1282 9.7725 -0.0056 13 6 3.2548 11.0006 -0.0068 14 1 2.1796 10.8986 -0.0081 15 6 3.8284 12.2544 -0.0074 16 7 3.0662 13.3261 -0.0090 17 14 5.6880 12.4308 -0.0074 18 1 6.1809 12.4768 -1.4074 19 1 6.0663 13.6851 0.6920 20 1 6.2953 11.2708 0.6932 21 6 1.8733 3.5105 -0.0021 22 7 1.3180 2.3134 -0.0016 23 1 -0.3632 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 4.0213 0.3671 -0.0050 27 1 5.1292 2.5891 -0.0019 28 1 4.8008 5.0164 -0.0027 29 1 2.3569 6.1162 -0.8939 30 1 2.3566 6.1177 0.8861 31 1 2.3195 8.6604 -0.0062 32 1 4.7565 9.7749 0.8852 33 1 4.7586 9.7736 -0.8948 34 1 3.4697 14.2083 -0.0099 35 1 1.2464 4.3900 -0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020035107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:21 Heat of formation + Delta-G solvation = -33.803550 kcal Electronic energy + Delta-G solvation = -18692.007005 eV Core-core repulsion = 15497.608629 eV Total energy + Delta-G solvation = -3194.398377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70201 -39.34874 -38.11729 -35.42541 -34.43348 -32.56320 -32.41183 -30.13509 -28.45923 -27.22686 -26.25441 -23.58304 -22.53327 -21.87134 -20.15636 -18.47838 -18.21927 -16.94273 -16.80816 -16.06248 -15.95127 -15.51127 -15.47367 -14.83327 -14.59868 -14.18811 -13.95593 -13.66762 -13.44922 -13.16859 -12.83843 -12.62254 -12.41533 -12.16671 -11.95498 -11.44069 -11.12660 -10.85269 -10.44097 -10.05932 -9.77476 -9.60845 -9.54400 -9.51669 -8.87312 -8.35318 -7.41309 -6.28961 -4.32301 1.04588 1.34297 2.93934 2.98799 3.17745 3.21206 3.28545 3.34853 3.72882 3.87312 4.26055 4.30781 4.72117 4.83857 4.95933 5.05942 5.07039 5.16474 5.17739 5.23455 5.28885 5.44493 5.50394 5.68456 5.85237 6.16889 6.64898 6.92026 6.94473 7.02953 7.20290 7.26496 7.56251 7.84161 7.98113 8.35515 8.59227 8.72978 9.30019 10.82808 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.053096 B = 0.002950 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.221066 B = 9489.881259 C = 9991.353684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.316 6.316 3 C 0.254 3.746 4 C -0.136 4.136 5 C -0.119 4.119 6 C 0.144 3.856 7 N -0.726 5.726 8 C 0.102 3.898 9 C 0.496 3.504 10 O -0.555 6.555 11 N -0.698 5.698 12 C 0.220 3.780 13 C -0.547 4.547 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 C 0.057 3.943 22 N -0.499 5.499 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.413 0.587 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.400 0.600 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 -22.627 0.036 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.223 6.223 3 C 0.073 3.927 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.038 3.962 7 N -0.360 5.360 8 C -0.026 4.026 9 C 0.280 3.720 10 O -0.435 6.435 11 N -0.346 5.346 12 C 0.098 3.902 13 C -0.585 4.585 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.186 1.186 21 C -0.104 4.104 22 N -0.221 5.221 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.158 0.842 27 H 0.159 0.841 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.234 0.766 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.035 -22.622 0.038 22.824 hybrid contribution 1.379 0.665 -0.023 1.531 sum -1.655 -21.957 0.015 22.019 Atomic orbital electron populations 1.22755 0.77838 1.02414 1.02205 1.86196 1.22336 1.24605 1.89212 1.19537 0.89290 0.84516 0.99353 1.20805 0.91884 0.98617 1.04445 1.20897 1.00250 0.90095 1.03644 1.18703 0.93487 0.86001 0.97970 1.44297 1.09312 1.00556 1.81858 1.21131 0.93634 0.84463 1.03416 1.20342 0.88865 0.85145 0.77627 1.90649 1.14704 1.86660 1.51490 1.46132 1.11164 1.05685 1.71630 1.19548 0.91482 0.82166 0.96964 1.21062 0.94869 0.88805 1.53736 0.90123 1.24797 0.98537 0.95470 0.93785 1.69876 1.35625 0.98132 1.49052 0.86812 0.85458 0.78299 0.79072 1.19815 1.20818 1.18560 1.21900 0.90680 0.94126 1.03655 1.67099 1.40524 0.98368 1.16102 0.92626 0.92616 0.89101 0.84233 0.84149 0.74820 0.89251 0.89256 0.76612 0.95512 0.95963 0.92153 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.32 -3.59 10.48 -19.03 -0.20 -3.79 16 3 C 0.25 3.08 7.49 -17.16 -0.13 2.95 16 4 C -0.14 -1.42 10.03 -39.30 -0.39 -1.82 16 5 C -0.12 -1.22 10.04 -39.12 -0.39 -1.61 16 6 C 0.14 1.65 6.68 -83.55 -0.56 1.09 16 7 N -0.73 -8.73 5.72 -59.65 -0.34 -9.07 16 8 C 0.10 1.20 5.41 -5.19 -0.03 1.17 16 9 C 0.50 8.37 7.90 -10.98 -0.09 8.28 16 10 O -0.56 -11.35 15.67 5.56 0.09 -11.27 16 11 N -0.70 -12.83 5.55 -61.47 -0.34 -13.17 16 12 C 0.22 5.13 4.50 -5.19 -0.02 5.11 16 13 C -0.55 -14.43 9.83 -34.44 -0.34 -14.77 16 14 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 16 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 17 Si 0.88 20.83 27.47 -169.99 -4.67 16.17 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 21 C 0.06 0.66 10.49 -17.33 -0.18 0.48 16 22 N -0.50 -6.24 9.20 -13.17 -0.12 -6.36 16 23 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 24 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.41 5.32 7.46 -40.82 -0.30 5.02 16 29 H 0.09 0.89 7.96 -51.93 -0.41 0.47 16 30 H 0.09 0.89 7.96 -51.93 -0.41 0.47 16 31 H 0.40 6.29 8.32 -40.82 -0.34 5.95 16 32 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 33 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.16 1.50 6.75 -52.49 -0.35 1.15 16 LS Contribution 306.86 15.07 4.62 4.62 Total: -1.00 -31.94 306.86 -5.65 -37.59 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.28 Total: 5.97 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.18 Total: 4.35 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.03 Total: -53.65 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.11 Total: -15.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.94 -5.65 -37.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020035107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.787 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds