Wall clock time and date at job start Mon Mar 30 2020 05:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46919 * 2 1 4 4 C 1.46503 * 120.00204 * 85.04835 * 3 2 1 5 5 C 1.50692 * 109.47258 * 96.67466 * 4 3 2 6 6 H 1.08006 * 120.00282 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00259 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00208 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99538 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46961 * 90.00392 * 9 7 5 11 11 H 1.48496 * 109.47133 * 210.00171 * 9 7 5 12 12 H 1.48503 * 109.47253 * 330.00134 * 9 7 5 13 13 C 1.34774 * 119.99816 * 265.04240 * 3 2 1 14 14 O 1.21555 * 120.00078 * 5.80738 * 13 3 2 15 15 C 1.47863 * 120.00246 * 185.80681 * 13 3 2 16 16 C 1.40068 * 120.09533 * 175.72299 * 15 13 3 17 17 C 1.38294 * 117.98987 * 179.97438 * 16 15 13 18 18 C 1.39605 * 118.02786 * 0.02562 * 17 16 15 19 19 N 1.38503 * 120.04244 * 179.97438 * 18 17 16 20 20 N 1.36607 * 119.99513 * 179.97438 * 19 18 17 21 21 N 1.32851 * 119.90331 * 359.97438 * 18 17 16 22 22 N 1.28355 * 122.16301 * 359.73866 * 21 18 17 23 23 H 1.08995 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47086 * 300.00396 * 1 2 3 25 25 H 1.09002 * 109.46955 * 60.00516 * 1 2 3 26 26 H 1.09000 * 109.47086 * 239.99604 * 2 1 3 27 27 H 1.09002 * 109.46955 * 119.99484 * 2 1 3 28 28 H 1.08996 * 109.46946 * 216.67363 * 4 3 2 29 29 H 1.08994 * 109.46692 * 336.67062 * 4 3 2 30 30 H 0.97004 * 119.99542 * 180.02562 * 8 7 5 31 31 H 1.07996 * 121.00892 * 359.95075 * 16 15 13 32 32 H 1.07991 * 120.98245 * 180.02562 * 17 16 15 33 33 H 0.96996 * 120.00349 * 0.02562 * 19 18 17 34 34 H 1.00899 * 110.99540 * 56.05078 * 20 19 18 35 35 H 1.00900 * 110.99913 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1084 1.2640 5 6 3.5874 2.0216 1.7369 6 1 4.3171 1.4787 1.1545 7 6 3.9624 2.6344 2.9138 8 7 5.2086 2.5583 3.3267 9 14 2.7001 3.5728 3.9215 10 1 2.0601 2.6519 4.8949 11 1 3.3720 4.6769 4.6527 12 1 1.6646 4.1356 3.0180 13 6 2.3380 1.9829 -1.1628 14 8 2.1225 1.4194 -2.2181 15 6 2.9509 3.3285 -1.1550 16 6 3.3660 3.9182 -2.3558 17 6 3.9332 5.1782 -2.2980 18 6 4.0577 5.7848 -1.0469 19 7 4.6201 7.0460 -0.9407 20 7 4.7411 7.6389 0.2841 21 7 3.6360 5.1506 0.0416 22 7 3.1044 3.9834 -0.0105 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8891 3.1536 1.1139 29 1 1.5011 1.6670 2.0123 30 1 5.4722 2.9891 4.1549 31 1 3.2471 3.4044 -3.2982 32 1 4.2697 5.6779 -3.1943 33 1 4.9275 7.5086 -1.7359 34 1 5.2599 7.0522 0.9201 35 1 5.1670 8.5501 0.2042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051117272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:49 Heat of formation + Delta-G solvation = 79.339400 kcal Electronic energy + Delta-G solvation = -20577.624849 eV Core-core repulsion = 17420.425471 eV Total energy + Delta-G solvation = -3157.199379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58145 -38.81961 -36.89083 -35.34292 -32.70464 -32.52576 -31.88452 -30.31056 -27.81815 -27.44504 -24.73151 -23.41490 -22.51347 -22.14758 -19.30592 -18.36267 -17.67608 -16.84416 -16.48037 -16.21578 -15.25785 -15.18034 -14.61888 -14.26433 -14.00179 -13.68260 -13.39269 -13.02564 -12.94876 -12.38948 -12.17238 -12.00368 -11.71774 -11.59547 -10.85803 -10.70180 -10.51403 -10.23545 -9.95608 -9.81105 -9.48664 -9.40651 -9.18980 -8.75898 -8.40754 -7.69027 -7.37953 -5.97435 -3.90730 1.28121 1.36854 2.87663 3.39184 3.41647 3.49041 3.58760 3.81058 4.38118 4.49940 4.56644 4.88194 5.04943 5.11483 5.36978 5.41883 5.46125 5.62067 5.77979 5.86748 6.05626 6.22776 6.24401 6.28207 6.41792 6.61971 6.65444 6.71489 7.18404 7.47492 7.54439 7.73467 8.06509 8.20423 8.58023 8.87403 9.04733 9.44152 9.65691 11.15497 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.010196 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.422264 B = 2745.566267 C = 4303.181172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.572 5.572 4 C 0.198 3.802 5 C -0.500 4.500 6 H 0.068 0.932 7 C 0.084 3.916 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.258 1.258 13 C 0.581 3.419 14 O -0.572 6.572 15 C -0.041 4.041 16 C -0.026 4.026 17 C -0.206 4.206 18 C 0.350 3.650 19 N -0.564 5.564 20 N -0.597 5.597 21 N -0.288 5.288 22 N -0.095 5.095 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.408 0.592 34 H 0.351 0.649 35 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 6.905 -8.939 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.301 5.301 4 C 0.077 3.923 5 C -0.540 4.540 6 H 0.086 0.914 7 C -0.118 4.118 8 N -0.538 5.538 9 Si 0.704 3.296 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.182 1.182 13 C 0.367 3.633 14 O -0.452 6.452 15 C -0.189 4.189 16 C -0.056 4.056 17 C -0.240 4.240 18 C 0.109 3.891 19 N -0.291 5.291 20 N -0.223 5.223 21 N -0.142 5.142 22 N 0.058 4.942 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.247 0.753 34 H 0.167 0.833 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.704 6.733 -7.516 10.749 hybrid contribution 1.193 0.856 -1.177 1.882 sum -2.510 7.588 -8.693 11.809 Atomic orbital electron populations 1.22120 0.96637 1.01395 1.02068 1.21363 0.93602 0.83207 1.02942 1.47909 1.61006 1.13345 1.07792 1.20397 0.98096 0.93763 0.80017 1.21137 0.93299 1.32841 1.06706 0.91377 1.24686 0.94948 0.95075 0.97099 1.69909 1.16787 1.44428 1.22657 0.86827 0.82529 0.79995 0.80255 1.21000 1.21282 1.18204 1.17447 0.77969 0.84074 0.83777 1.90671 1.57325 1.66124 1.31105 1.22468 1.06159 0.98659 0.91663 1.21969 0.91199 0.92949 0.99434 1.21379 1.08216 0.97411 0.96975 1.20023 0.90676 0.86058 0.92331 1.42708 1.66173 1.15974 1.04216 1.59979 1.59485 1.04758 0.98068 1.73550 1.13288 1.04105 1.23228 1.74081 1.01984 0.97603 1.20511 0.92201 0.92548 0.92684 0.90580 0.90216 0.91094 0.96005 0.92857 0.83007 0.84071 0.75282 0.83303 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.24 37.16 0.38 -2.16 16 2 C 0.11 2.07 6.11 -4.04 -0.02 2.04 16 3 N -0.57 -12.56 2.48 -176.17 -0.44 -13.00 16 4 C 0.20 4.77 3.85 -5.20 -0.02 4.75 16 5 C -0.50 -13.89 8.19 -34.44 -0.28 -14.17 16 6 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 7 C 0.08 2.40 5.47 -17.82 -0.10 2.31 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 9 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.58 12.85 7.59 -12.32 -0.09 12.76 16 14 O -0.57 -12.82 15.95 5.32 0.08 -12.73 16 15 C -0.04 -0.88 6.66 -82.84 -0.55 -1.43 16 16 C -0.03 -0.44 9.71 -38.88 -0.38 -0.82 16 17 C -0.21 -2.95 10.04 -39.05 -0.39 -3.34 16 18 C 0.35 5.84 7.63 -154.94 -1.18 4.66 16 19 N -0.56 -7.03 6.61 31.20 0.21 -6.83 16 20 N -0.60 -7.44 10.05 60.35 0.61 -6.83 16 21 N -0.29 -6.16 10.97 31.21 0.34 -5.82 16 22 N -0.09 -2.18 6.03 33.32 0.20 -1.98 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.39 7.36 -51.93 -0.38 1.01 16 27 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 28 H 0.07 1.78 4.58 -51.93 -0.24 1.54 16 29 H 0.02 0.51 7.45 -51.93 -0.39 0.12 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.15 2.23 7.72 -52.49 -0.41 1.82 16 32 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.41 3.39 8.83 -185.15 -1.63 1.76 16 34 H 0.35 4.94 9.03 -181.36 -1.64 3.30 16 35 H 0.35 2.83 9.21 -181.36 -1.67 1.16 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -34.66 300.89 -9.05 -43.71 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -8.06 Total: 3.57 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -2.64 Total: 4.59 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 1.69 Total: -60.88 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.66 -9.05 -43.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051117272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.053 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds