Wall clock time and date at job start Mon Mar 30 2020 05:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46919 * 2 1 4 4 C 1.46503 * 120.00204 * 85.04835 * 3 2 1 5 5 C 1.50692 * 109.47258 * 96.67466 * 4 3 2 6 6 H 1.08006 * 120.00282 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00259 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00208 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99538 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46961 * 90.00392 * 9 7 5 11 11 H 1.48496 * 109.47133 * 210.00171 * 9 7 5 12 12 H 1.48503 * 109.47253 * 330.00134 * 9 7 5 13 13 C 1.34774 * 119.99816 * 265.04240 * 3 2 1 14 14 O 1.21555 * 120.00078 * 5.80738 * 13 3 2 15 15 C 1.47863 * 120.00246 * 185.80681 * 13 3 2 16 16 C 1.40068 * 120.09533 * 175.72299 * 15 13 3 17 17 C 1.38294 * 117.98987 * 179.97438 * 16 15 13 18 18 C 1.39605 * 118.02786 * 0.02562 * 17 16 15 19 19 N 1.38503 * 120.04244 * 179.97438 * 18 17 16 20 20 N 1.36607 * 119.99513 * 179.97438 * 19 18 17 21 21 N 1.32851 * 119.90331 * 359.97438 * 18 17 16 22 22 N 1.28355 * 122.16301 * 359.73866 * 21 18 17 23 23 H 1.08995 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47086 * 300.00396 * 1 2 3 25 25 H 1.09002 * 109.46955 * 60.00516 * 1 2 3 26 26 H 1.09000 * 109.47086 * 239.99604 * 2 1 3 27 27 H 1.09002 * 109.46955 * 119.99484 * 2 1 3 28 28 H 1.08996 * 109.46946 * 216.67363 * 4 3 2 29 29 H 1.08994 * 109.46692 * 336.67062 * 4 3 2 30 30 H 0.97004 * 119.99542 * 180.02562 * 8 7 5 31 31 H 1.07996 * 121.00892 * 359.95075 * 16 15 13 32 32 H 1.07991 * 120.98245 * 180.02562 * 17 16 15 33 33 H 0.96996 * 120.00349 * 0.02562 * 19 18 17 34 34 H 1.00899 * 110.99540 * 56.05078 * 20 19 18 35 35 H 1.00900 * 110.99913 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1084 1.2640 5 6 3.5874 2.0216 1.7369 6 1 4.3171 1.4787 1.1545 7 6 3.9624 2.6344 2.9138 8 7 5.2086 2.5583 3.3267 9 14 2.7001 3.5728 3.9215 10 1 2.0601 2.6519 4.8949 11 1 3.3720 4.6769 4.6527 12 1 1.6646 4.1356 3.0180 13 6 2.3380 1.9829 -1.1628 14 8 2.1225 1.4194 -2.2181 15 6 2.9509 3.3285 -1.1550 16 6 3.3660 3.9182 -2.3558 17 6 3.9332 5.1782 -2.2980 18 6 4.0577 5.7848 -1.0469 19 7 4.6201 7.0460 -0.9407 20 7 4.7411 7.6389 0.2841 21 7 3.6360 5.1506 0.0416 22 7 3.1044 3.9834 -0.0105 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8891 3.1536 1.1139 29 1 1.5011 1.6670 2.0123 30 1 5.4722 2.9891 4.1549 31 1 3.2471 3.4044 -3.2982 32 1 4.2697 5.6779 -3.1943 33 1 4.9275 7.5086 -1.7359 34 1 5.2599 7.0522 0.9201 35 1 5.1670 8.5501 0.2042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051117272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:49 Heat of formation + Delta-G solvation = 53.072519 kcal Electronic energy + Delta-G solvation = -20578.763867 eV Core-core repulsion = 17420.425471 eV Total energy + Delta-G solvation = -3158.338396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01577 -40.40370 -38.07809 -37.05091 -34.56578 -33.98611 -33.37620 -31.79510 -29.47794 -28.93044 -26.18719 -24.73831 -24.42430 -23.59668 -20.86092 -19.57618 -19.05862 -18.89085 -18.04426 -17.58867 -16.77406 -16.54884 -16.19950 -15.89386 -15.49714 -15.23124 -14.76308 -14.65389 -14.27602 -14.24671 -13.74601 -13.56803 -13.14464 -13.00377 -12.57397 -12.55385 -12.08391 -11.97737 -11.71318 -11.54415 -11.13427 -10.85982 -10.78048 -10.56716 -10.18860 -9.42144 -8.52464 -8.15825 -6.13369 -0.14034 0.07654 1.42243 1.48496 1.61183 1.81563 1.81675 2.24812 2.49220 2.90214 3.13742 3.27653 3.57407 3.79622 3.90093 4.09613 4.24236 4.28662 4.41212 4.56651 4.78309 4.78834 4.95380 4.96985 5.08787 5.11626 5.27927 5.38837 5.62761 5.63738 5.82358 6.27005 6.41713 6.58826 6.80979 7.10454 7.20657 7.48322 8.02373 9.01317 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.010196 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.422264 B = 2745.566267 C = 4303.181172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.104 3.896 3 N -0.581 5.581 4 C 0.212 3.788 5 C -0.490 4.490 6 H 0.019 0.981 7 C 0.036 3.964 8 N -0.948 5.948 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.250 1.250 13 C 0.574 3.426 14 O -0.581 6.581 15 C -0.071 4.071 16 C -0.033 4.033 17 C -0.174 4.174 18 C 0.342 3.658 19 N -0.540 5.540 20 N -0.610 5.610 21 N -0.333 5.333 22 N -0.134 5.134 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.262 0.738 31 H 0.174 0.826 32 H 0.199 0.801 33 H 0.432 0.568 34 H 0.342 0.658 35 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 8.548 -10.370 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.310 5.310 4 C 0.089 3.911 5 C -0.530 4.530 6 H 0.037 0.963 7 C -0.162 4.162 8 N -0.590 5.590 9 Si 0.760 3.240 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.174 1.174 13 C 0.361 3.639 14 O -0.463 6.463 15 C -0.221 4.221 16 C -0.061 4.061 17 C -0.207 4.207 18 C 0.099 3.901 19 N -0.268 5.268 20 N -0.239 5.239 21 N -0.188 5.188 22 N 0.020 4.980 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.191 0.809 32 H 0.217 0.783 33 H 0.276 0.724 34 H 0.157 0.843 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.663 8.418 -8.965 13.152 hybrid contribution 1.611 0.474 -0.919 1.914 sum -3.053 8.891 -9.884 13.640 Atomic orbital electron populations 1.22028 0.93965 1.03376 1.01675 1.21593 0.95804 0.81608 1.02842 1.47992 1.61386 1.14471 1.07131 1.20097 0.95676 0.94203 0.81075 1.21112 0.94150 1.31710 1.05983 0.96265 1.25377 0.96531 0.95980 0.98277 1.70043 1.18923 1.46484 1.23544 0.85896 0.80344 0.78809 0.78941 1.19408 1.21526 1.17381 1.17760 0.77714 0.84738 0.83645 1.90636 1.57889 1.66669 1.31126 1.22590 1.07747 0.98563 0.93196 1.22237 0.91171 0.93985 0.98715 1.21901 1.04969 0.95957 0.97901 1.20338 0.90176 0.87193 0.92416 1.42661 1.64219 1.14566 1.05325 1.59880 1.60085 1.05796 0.98107 1.73328 1.15360 1.04289 1.25778 1.73873 1.03453 0.98742 1.21924 0.89028 0.92482 0.93417 0.90750 0.90252 0.91353 0.94855 0.92903 0.80893 0.78347 0.72413 0.84259 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 10.24 71.98 0.74 -3.77 16 2 C 0.10 3.82 6.11 86.38 0.53 4.34 16 3 N -0.58 -25.89 2.48 -829.56 -2.05 -27.94 16 4 C 0.21 10.31 3.85 85.63 0.33 10.64 16 5 C -0.49 -28.19 8.19 25.60 0.21 -27.98 16 6 H 0.02 1.26 8.06 -2.91 -0.02 1.23 16 7 C 0.04 2.10 5.47 84.66 0.46 2.57 16 8 N -0.95 -59.42 13.96 21.45 0.30 -59.13 16 9 Si 0.94 45.64 27.47 68.60 1.88 47.53 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 12 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 13 C 0.57 25.70 7.59 86.79 0.66 26.35 16 14 O -0.58 -26.06 15.95 -3.89 -0.06 -26.12 16 15 C -0.07 -2.99 6.66 42.00 0.28 -2.71 16 16 C -0.03 -1.03 9.71 22.73 0.22 -0.81 16 17 C -0.17 -4.35 10.04 22.61 0.23 -4.12 16 18 C 0.34 10.65 7.63 133.21 1.02 11.67 16 19 N -0.54 -11.77 6.61 -55.20 -0.36 -12.13 16 20 N -0.61 -13.91 10.05 37.02 0.37 -13.54 16 21 N -0.33 -14.17 10.97 -55.17 -0.61 -14.77 16 22 N -0.13 -6.23 6.03 -48.50 -0.29 -6.53 16 23 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 2.73 7.36 -2.39 -0.02 2.71 16 27 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 28 H 0.07 3.46 4.58 -2.39 -0.01 3.45 16 29 H 0.03 1.54 7.45 -2.39 -0.02 1.52 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.70 16 31 H 0.17 4.65 7.72 -2.91 -0.02 4.63 16 32 H 0.20 2.59 8.06 -2.92 -0.02 2.57 16 33 H 0.43 5.24 8.83 -215.50 -1.90 3.33 16 34 H 0.34 9.31 9.03 -210.55 -1.90 7.40 16 35 H 0.37 5.04 9.21 -210.55 -1.94 3.10 16 Total: -1.00 -79.13 300.89 -0.79 -79.93 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -4.64 Total: 16.54 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 4.67 Total: 16.17 kcal Atomic # 7 Polarization: -131.39 SS G_CDS: -2.64 Total: -134.04 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.06 Total: -26.12 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.53 kcal Total: -79.13 -0.79 -79.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051117272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.999 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds