Wall clock time and date at job start Mon Mar 30 2020 05:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46904 * 110.99894 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46867 * 180.02562 * 9 8 7 11 11 O 1.21293 * 120.00062 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99702 * 180.02562 * 10 9 8 13 13 C 1.37095 * 119.99813 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00437 * 359.97438 * 13 12 10 15 15 C 1.38959 * 119.99872 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99820 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99740 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47089 * 90.00421 * 17 15 13 19 19 H 1.48502 * 109.46938 * 210.00209 * 17 15 13 20 20 H 1.48500 * 109.47583 * 329.99919 * 17 15 13 21 21 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 22 22 N 1.31967 * 120.83264 * 0.02562 * 21 6 5 23 23 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 25 25 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 26 26 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 27 27 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 29 29 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 30 30 H 1.00896 * 111.00593 * 303.95703 * 8 7 6 31 31 H 1.08997 * 109.47179 * 300.00221 * 9 8 7 32 32 H 1.09001 * 109.46761 * 60.00391 * 9 8 7 33 33 H 0.97003 * 119.99986 * 359.97438 * 12 10 9 34 34 H 0.96998 * 119.99621 * 179.97438 * 16 15 13 35 35 H 1.07994 * 119.58392 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 4.6897 6.8013 -1.4226 10 6 4.8815 7.2240 -2.8564 11 8 4.5430 6.4852 -3.7569 12 7 5.4291 8.4228 -3.1379 13 6 5.6031 8.8076 -4.4422 14 1 5.3018 8.1499 -5.2441 15 6 6.1681 10.0435 -4.7325 16 7 6.3345 10.4125 -5.9827 17 14 6.6900 11.1807 -3.3456 18 1 8.1015 10.8997 -2.9795 19 1 6.5654 12.5923 -3.7896 20 1 5.8179 10.9545 -2.1651 21 6 1.8772 3.5097 0.0021 22 7 1.3187 2.3141 0.0026 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0229 0.3694 -0.0035 27 1 5.1255 2.5946 0.0011 28 1 3.2187 5.7201 0.5158 29 1 4.8376 4.9803 0.5150 30 1 4.6342 4.7992 -1.9001 31 1 4.0367 7.5136 -0.9184 32 1 5.6560 6.7745 -0.9189 33 1 5.6994 9.0138 -2.4177 34 1 6.7286 11.2753 -6.1853 35 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062070807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:47 Heat of formation + Delta-G solvation = -28.539803 kcal Electronic energy + Delta-G solvation = -18748.861990 eV Core-core repulsion = 15554.691867 eV Total energy + Delta-G solvation = -3194.170123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76967 -38.59246 -38.13826 -35.63234 -33.93012 -32.60798 -31.69889 -31.26779 -28.03709 -27.02322 -24.98688 -23.63090 -23.31078 -21.72218 -19.41204 -18.57439 -18.39045 -17.27015 -16.41233 -16.16920 -15.61455 -15.14933 -14.82567 -14.64277 -14.43230 -14.28610 -13.73931 -13.32691 -13.25673 -13.20259 -12.90098 -12.39067 -12.09524 -11.97103 -11.71141 -11.50395 -11.31265 -11.16918 -10.60244 -10.04215 -9.98046 -9.77268 -9.57926 -8.61789 -8.59437 -8.20243 -8.14232 -6.31471 -3.82993 1.01605 1.11070 2.91905 3.02110 3.05905 3.14541 3.57479 3.73510 4.09430 4.17563 4.25761 4.67613 4.73624 4.84868 4.92425 4.97670 5.10260 5.11900 5.21134 5.31434 5.40642 5.51894 5.58882 5.66927 5.76527 5.80601 5.91897 6.13769 6.27562 7.00895 7.06884 7.51590 7.57822 7.71346 8.14113 8.59320 8.94642 9.41900 9.82179 10.81696 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.048572 B = 0.003026 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.321182 B = 9249.707106 C = 9452.215389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.315 3.685 4 C -0.191 4.191 5 C -0.035 4.035 6 C -0.166 4.166 7 C 0.107 3.893 8 N -0.665 5.665 9 C 0.047 3.953 10 C 0.449 3.551 11 O -0.564 6.564 12 N -0.591 5.591 13 C -0.305 4.305 14 H 0.119 0.881 15 C 0.041 3.959 16 N -0.881 5.881 17 Si 0.880 3.120 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.269 1.269 21 C 0.163 3.837 22 N -0.541 5.541 23 H 0.094 0.906 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.352 0.648 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.371 0.629 34 H 0.273 0.727 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 -14.196 17.696 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.136 3.864 4 C -0.211 4.211 5 C -0.061 4.061 6 C -0.169 4.169 7 C -0.023 4.023 8 N -0.298 5.298 9 C -0.085 4.085 10 C 0.235 3.765 11 O -0.446 6.446 12 N -0.230 5.230 13 C -0.434 4.434 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.521 5.521 17 Si 0.707 3.293 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.194 1.194 21 C 0.007 3.993 22 N -0.264 5.264 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.171 0.829 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.324 -14.648 16.842 23.492 hybrid contribution 2.016 1.081 1.167 2.568 sum -5.308 -13.568 18.008 23.164 Atomic orbital electron populations 1.22842 0.77288 1.02773 1.02555 1.86220 1.22908 1.24754 1.87956 1.19861 0.89443 0.84733 0.92372 1.21009 0.91997 0.99444 1.08679 1.21343 1.00471 0.90910 0.93332 1.20624 0.94965 0.95884 1.05388 1.20741 0.98906 0.91899 0.90715 1.60120 1.55101 1.03409 1.11167 1.21728 0.98056 0.92067 0.96671 1.19701 0.83647 0.83311 0.89847 1.90576 1.53258 1.53209 1.47519 1.42205 1.56498 1.16170 1.08144 1.19436 1.38501 1.02718 0.82741 0.86296 1.25048 0.97569 0.97090 0.96502 1.69622 1.43584 1.21867 1.17059 0.86660 0.79410 0.81390 0.81855 1.19677 1.20175 1.19442 1.22317 0.92304 0.93419 0.91272 1.67350 1.40873 0.98817 1.19366 0.88776 0.92369 0.92189 0.84218 0.84263 0.89881 0.94336 0.82859 0.89290 0.93627 0.79677 0.91608 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.58 10.48 -18.72 -0.20 -3.78 16 3 C 0.31 3.89 7.49 -17.12 -0.13 3.76 16 4 C -0.19 -2.05 10.04 -39.27 -0.39 -2.44 16 5 C -0.03 -0.35 9.85 -39.31 -0.39 -0.74 16 6 C -0.17 -1.85 5.41 -104.47 -0.57 -2.42 16 7 C 0.11 1.16 5.83 -4.98 -0.03 1.13 16 8 N -0.67 -9.95 6.11 -116.34 -0.71 -10.66 16 9 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 10 C 0.45 10.10 7.82 -10.98 -0.09 10.01 16 11 O -0.56 -15.19 15.78 5.55 0.09 -15.10 16 12 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 13 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 14 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 15 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 16 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 17 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 21 C 0.16 1.93 10.85 -17.56 -0.19 1.74 16 22 N -0.54 -6.94 9.22 -13.33 -0.12 -7.07 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 26 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 27 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.35 5.58 8.43 -39.29 -0.33 5.24 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -33.92 309.48 -5.63 -39.55 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.34 Total: 11.47 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.01 Total: 5.41 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.12 Total: -56.72 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.11 Total: -18.88 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.92 -5.63 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062070807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.010 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds