Wall clock time and date at job start Mon Mar 30 2020 05:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46904 * 110.99894 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46867 * 180.02562 * 9 8 7 11 11 O 1.21293 * 120.00062 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99702 * 180.02562 * 10 9 8 13 13 C 1.37095 * 119.99813 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00437 * 359.97438 * 13 12 10 15 15 C 1.38959 * 119.99872 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99820 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99740 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47089 * 90.00421 * 17 15 13 19 19 H 1.48502 * 109.46938 * 210.00209 * 17 15 13 20 20 H 1.48500 * 109.47583 * 329.99919 * 17 15 13 21 21 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 22 22 N 1.31967 * 120.83264 * 0.02562 * 21 6 5 23 23 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 25 25 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 26 26 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 27 27 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 29 29 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 30 30 H 1.00896 * 111.00593 * 303.95703 * 8 7 6 31 31 H 1.08997 * 109.47179 * 300.00221 * 9 8 7 32 32 H 1.09001 * 109.46761 * 60.00391 * 9 8 7 33 33 H 0.97003 * 119.99986 * 359.97438 * 12 10 9 34 34 H 0.96998 * 119.99621 * 179.97438 * 16 15 13 35 35 H 1.07994 * 119.58392 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 4.6897 6.8013 -1.4226 10 6 4.8815 7.2240 -2.8564 11 8 4.5430 6.4852 -3.7569 12 7 5.4291 8.4228 -3.1379 13 6 5.6031 8.8076 -4.4422 14 1 5.3018 8.1499 -5.2441 15 6 6.1681 10.0435 -4.7325 16 7 6.3345 10.4125 -5.9827 17 14 6.6900 11.1807 -3.3456 18 1 8.1015 10.8997 -2.9795 19 1 6.5654 12.5923 -3.7896 20 1 5.8179 10.9545 -2.1651 21 6 1.8772 3.5097 0.0021 22 7 1.3187 2.3141 0.0026 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0229 0.3694 -0.0035 27 1 5.1255 2.5946 0.0011 28 1 3.2187 5.7201 0.5158 29 1 4.8376 4.9803 0.5150 30 1 4.6342 4.7992 -1.9001 31 1 4.0367 7.5136 -0.9184 32 1 5.6560 6.7745 -0.9189 33 1 5.6994 9.0138 -2.4177 34 1 6.7286 11.2753 -6.1853 35 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062070807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:46 Heat of formation + Delta-G solvation = -57.564369 kcal Electronic energy + Delta-G solvation = -18750.120590 eV Core-core repulsion = 15554.691867 eV Total energy + Delta-G solvation = -3195.428723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60174 -40.27603 -39.06839 -36.80031 -35.87050 -33.75718 -33.46518 -32.23574 -29.09392 -28.09946 -26.44788 -24.73344 -24.37561 -22.58551 -21.28041 -20.28574 -19.37977 -18.12303 -17.90329 -17.13529 -16.98222 -16.55488 -16.15392 -15.55127 -15.45625 -15.32280 -15.16152 -14.78479 -14.52545 -14.25245 -14.13728 -13.93471 -13.39751 -13.10479 -12.81596 -12.72960 -12.40695 -12.34030 -12.10777 -11.96315 -11.49591 -10.87187 -10.64929 -10.41403 -10.23703 -9.48069 -9.22327 -8.40066 -6.01208 0.16152 0.29223 1.32147 1.37598 1.46836 1.98450 2.15813 2.24930 2.63166 2.93116 3.16823 3.37515 3.56185 3.85715 4.01405 4.06709 4.19637 4.22357 4.41923 4.45217 4.49309 4.58974 4.60349 4.73364 4.79359 4.86907 4.99125 5.32300 5.49385 5.53969 5.91353 6.05502 6.23683 6.37720 6.61449 6.85585 6.89880 7.41745 7.99186 8.77788 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.048572 B = 0.003026 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.321182 B = 9249.707106 C = 9452.215389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.294 3.706 4 C -0.196 4.196 5 C -0.033 4.033 6 C -0.170 4.170 7 C 0.113 3.887 8 N -0.687 5.687 9 C 0.063 3.937 10 C 0.447 3.553 11 O -0.618 6.618 12 N -0.591 5.591 13 C -0.329 4.329 14 H 0.053 0.947 15 C -0.018 4.018 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.256 1.256 19 H -0.277 1.277 20 H -0.228 1.228 21 C 0.147 3.853 22 N -0.560 5.560 23 H 0.123 0.877 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.158 0.842 27 H 0.166 0.834 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.343 0.657 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.391 0.609 34 H 0.279 0.721 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -13.529 21.344 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.116 3.884 4 C -0.216 4.216 5 C -0.058 4.058 6 C -0.173 4.173 7 C -0.015 4.015 8 N -0.320 5.320 9 C -0.069 4.069 10 C 0.235 3.765 11 O -0.502 6.502 12 N -0.233 5.233 13 C -0.459 4.459 14 H 0.071 0.929 15 C -0.216 4.216 16 N -0.577 5.577 17 Si 0.787 3.213 18 H -0.181 1.181 19 H -0.202 1.202 20 H -0.151 1.151 21 C -0.009 4.009 22 N -0.284 5.284 23 H 0.141 0.859 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.175 0.825 27 H 0.183 0.817 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.227 0.773 34 H 0.088 0.912 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.482 -13.998 20.531 25.680 hybrid contribution 1.676 0.731 -0.059 1.830 sum -4.805 -13.267 20.472 24.864 Atomic orbital electron populations 1.23014 0.76105 1.04525 1.02032 1.86205 1.24189 1.24614 1.87984 1.20215 0.90320 0.84883 0.93015 1.21314 0.91620 1.00593 1.08112 1.21683 1.01747 0.90332 0.92081 1.20736 0.94716 0.96559 1.05308 1.20800 1.00449 0.91742 0.88550 1.60103 1.55178 1.02927 1.13773 1.21654 1.00883 0.93062 0.91320 1.21098 0.80926 0.81941 0.92541 1.90556 1.54777 1.54602 1.50276 1.42028 1.57280 1.17248 1.06723 1.19002 1.40327 1.02813 0.83729 0.92919 1.26167 0.96621 0.98646 1.00149 1.69813 1.44614 1.22859 1.20419 0.85331 0.80078 0.77449 0.78433 1.18062 1.20233 1.15130 1.22596 0.93159 0.93489 0.91632 1.67323 1.41623 0.99339 1.20120 0.85922 0.92423 0.93146 0.82457 0.81699 0.88328 0.91767 0.83845 0.86376 0.89842 0.77334 0.91173 0.81270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.81 16 2 O -0.32 -7.29 10.48 -89.90 -0.94 -8.23 16 3 C 0.29 7.13 7.49 84.79 0.63 7.76 16 4 C -0.20 -3.93 10.04 22.47 0.23 -3.71 16 5 C -0.03 -0.59 9.85 22.45 0.22 -0.37 16 6 C -0.17 -3.42 5.41 -19.77 -0.11 -3.53 16 7 C 0.11 2.03 5.83 85.56 0.50 2.53 16 8 N -0.69 -18.74 6.11 -521.98 -3.19 -21.93 16 9 C 0.06 1.75 6.17 85.56 0.53 2.28 16 10 C 0.45 19.71 7.82 87.66 0.69 20.40 16 11 O -0.62 -34.25 15.78 -3.07 -0.05 -34.30 16 12 N -0.59 -27.35 5.09 -306.98 -1.56 -28.91 16 13 C -0.33 -19.27 10.16 84.04 0.85 -18.41 16 14 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 15 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 16 N -0.94 -56.57 13.96 21.67 0.30 -56.26 16 17 Si 0.97 38.16 27.74 68.60 1.90 40.06 16 18 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 19 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 21 C 0.15 3.34 10.85 84.63 0.92 4.25 16 22 N -0.56 -14.21 9.22 -308.95 -2.85 -17.06 16 23 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 25 H 0.05 0.93 8.11 -2.38 -0.02 0.91 16 26 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 27 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 28 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 29 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 30 H 0.34 10.31 8.43 -89.70 -0.76 9.56 16 31 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.39 14.69 5.76 -92.71 -0.53 14.16 16 34 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -79.86 309.48 -0.51 -80.37 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -0.23 Total: 33.74 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.10 Total: 12.51 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -7.30 Total: -124.16 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.99 Total: -42.52 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.06 kcal Total: -79.86 -0.51 -80.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062070807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.801 kcal (2) G-P(sol) polarization free energy of solvation -79.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds