Wall clock time and date at job start Mon Mar 30 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47322 * 2 1 4 4 C 1.50696 * 109.47846 * 120.00528 * 2 1 3 5 5 H 1.07997 * 120.00529 * 119.99743 * 4 2 1 6 6 C 1.37881 * 119.99793 * 300.00040 * 4 2 1 7 7 N 1.31509 * 120.00247 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 119.99686 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47199 * 90.00387 * 8 6 4 10 10 H 1.48503 * 109.46675 * 210.00071 * 8 6 4 11 11 H 1.48496 * 109.47211 * 329.99612 * 8 6 4 12 12 N 1.46506 * 109.46852 * 240.00532 * 2 1 3 13 13 C 1.46500 * 120.00009 * 299.99640 * 12 2 1 14 14 C 1.34773 * 120.00038 * 120.00091 * 12 2 1 15 15 O 1.21560 * 120.00526 * 5.58029 * 14 12 2 16 16 C 1.47857 * 120.00313 * 185.58681 * 14 12 2 17 17 C 1.40070 * 120.10093 * 186.39870 * 16 14 12 18 18 C 1.38291 * 117.99297 * 179.97438 * 17 16 14 19 19 C 1.39597 * 118.02891 * 0.02562 * 18 17 16 20 20 N 1.38504 * 120.04394 * 179.97438 * 19 18 17 21 21 N 1.36602 * 120.00012 * 179.97438 * 20 19 18 22 22 N 1.32856 * 119.90780 * 359.97438 * 19 18 17 23 23 N 1.28356 * 122.15486 * 359.73397 * 22 19 18 24 24 H 1.09003 * 109.46810 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46768 * 299.99687 * 1 2 3 26 26 H 1.08997 * 109.47446 * 59.99346 * 1 2 3 27 27 H 0.97003 * 120.00485 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.46899 * 95.40387 * 13 12 2 29 29 H 1.08998 * 109.46909 * 215.40480 * 13 12 2 30 30 H 1.09001 * 109.47129 * 335.40280 * 13 12 2 31 31 H 1.07997 * 120.99843 * 359.95022 * 17 16 14 32 32 H 1.08001 * 120.98046 * 180.02562 * 18 17 16 33 33 H 0.97003 * 120.00455 * 0.02562 * 20 19 18 34 34 H 1.00906 * 110.99713 * 56.04553 * 21 20 19 35 35 H 1.00894 * 111.00056 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1375 -0.8597 3.5564 8 14 0.6260 1.2797 2.6541 9 1 -0.8019 0.8743 2.6995 10 1 0.9774 1.9951 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1707 1.0946 -1.8427 16 6 3.1838 -0.6913 -3.3496 17 6 4.0956 -0.0683 -4.2113 18 6 4.4307 -0.7208 -5.3836 19 6 3.8396 -1.9598 -5.6368 20 7 4.1450 -2.6493 -6.7986 21 7 3.5664 -3.8620 -7.0452 22 7 2.9837 -2.4766 -4.7619 23 7 2.6756 -1.8751 -3.6707 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.9035 -0.5282 4.4375 28 1 0.7920 -2.1447 -2.0796 29 1 2.5019 -2.6057 -1.9013 30 1 1.4359 -2.5724 -0.4762 31 1 4.5236 0.8928 -3.9675 32 1 5.1291 -0.2846 -6.0825 33 1 4.7703 -2.2716 -7.4367 34 1 2.5599 -3.7937 -7.0226 35 1 3.8831 -4.2415 -7.9248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063098523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:48 Heat of formation + Delta-G solvation = 82.841041 kcal Electronic energy + Delta-G solvation = -19971.985299 eV Core-core repulsion = 16814.937763 eV Total energy + Delta-G solvation = -3157.047536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06734 -38.95052 -37.33087 -35.55658 -33.26607 -32.82358 -32.03017 -30.24331 -28.17166 -26.17723 -25.18896 -24.85348 -23.61245 -21.65404 -19.24317 -18.75930 -18.06709 -16.99987 -16.57922 -16.32973 -15.77368 -15.49003 -14.98805 -14.59347 -14.12765 -14.00215 -13.50554 -13.04593 -12.76348 -12.42808 -12.23802 -12.15521 -12.02825 -11.68733 -11.06856 -10.85057 -10.66640 -10.26878 -10.09766 -9.93696 -9.60823 -9.50050 -9.27692 -9.14640 -8.57940 -7.88347 -7.63010 -6.08724 -4.09117 0.77401 0.88387 2.43297 3.12303 3.28455 3.41107 3.43806 3.65810 3.97905 4.03526 4.39772 4.40420 4.66325 4.76753 4.93561 5.07552 5.24455 5.65912 5.82482 5.85207 6.15984 6.23349 6.32445 6.34947 6.38431 6.54725 6.77479 6.89325 7.04416 7.18119 7.40564 7.62557 7.67714 8.21019 8.50916 8.73172 8.88048 8.95075 9.51785 11.04001 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.040543 B = 0.004607 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.452066 B = 6076.179147 C = 6325.005196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.227 3.773 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.081 0.919 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.563 5.563 13 C 0.090 3.910 14 C 0.565 3.435 15 O -0.550 6.550 16 C -0.019 4.019 17 C -0.023 4.023 18 C -0.189 4.189 19 C 0.351 3.649 20 N -0.562 5.562 21 N -0.596 5.596 22 N -0.295 5.295 23 N -0.157 5.157 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.412 0.588 34 H 0.347 0.653 35 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -2.271 -22.416 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.126 3.874 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.099 0.901 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.291 5.291 13 C -0.053 4.053 14 C 0.349 3.651 15 O -0.429 6.429 16 C -0.170 4.170 17 C -0.052 4.052 18 C -0.223 4.223 19 C 0.110 3.890 20 N -0.288 5.288 21 N -0.222 5.222 22 N -0.148 5.148 23 N -0.004 5.004 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.179 0.821 32 H 0.166 0.834 33 H 0.252 0.748 34 H 0.163 0.837 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.896 -3.338 -21.042 21.389 hybrid contribution 0.187 2.255 -1.414 2.668 sum 2.084 -1.083 -22.456 22.579 Atomic orbital electron populations 1.22449 0.98781 1.01386 0.99183 1.19380 0.90130 0.95173 0.82743 0.91910 1.21159 1.32643 1.14256 0.88366 0.90143 1.24856 0.95669 0.96577 0.95583 1.69875 1.45267 1.40179 0.97940 0.86917 0.80472 0.83873 0.77425 1.20373 1.22192 1.18794 1.47798 1.47068 1.12472 1.21754 1.21953 1.00593 0.81304 1.01467 1.17474 0.79870 0.85531 0.82228 1.90738 1.56017 1.18800 1.77326 1.22820 1.00286 0.94989 0.98878 1.22132 0.92207 1.00116 0.90792 1.21551 1.05103 0.95325 1.00364 1.19867 0.92390 0.88883 0.87881 1.42747 1.48248 1.18262 1.19572 1.59932 1.12505 1.09531 1.40273 1.73307 1.15037 1.27292 0.99213 1.73617 1.15657 1.04826 1.06292 0.92298 0.93123 0.94811 0.92464 0.93160 0.90618 0.90370 0.82137 0.83375 0.74812 0.83715 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.67 37.16 0.32 -3.24 16 2 C 0.23 5.68 2.22 -69.08 -0.15 5.53 16 3 H 0.06 1.70 5.97 -51.93 -0.31 1.39 16 4 C -0.53 -14.93 8.54 -34.44 -0.29 -15.22 16 5 H 0.08 2.47 7.67 -52.49 -0.40 2.06 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 8 Si 0.88 22.09 24.37 -169.99 -4.14 17.94 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.56 -12.53 2.75 -176.38 -0.49 -13.02 16 13 C 0.09 1.75 8.06 59.85 0.48 2.23 16 14 C 0.56 12.09 7.64 -12.33 -0.09 12.00 16 15 O -0.55 -13.11 15.75 5.31 0.08 -13.03 16 16 C -0.02 -0.33 6.64 -82.84 -0.55 -0.88 16 17 C -0.02 -0.32 9.71 -38.88 -0.38 -0.69 16 18 C -0.19 -1.95 10.04 -39.05 -0.39 -2.34 16 19 C 0.35 4.09 7.63 -154.94 -1.18 2.90 16 20 N -0.56 -4.37 6.61 31.20 0.21 -4.16 16 21 N -0.60 -4.34 10.05 60.35 0.61 -3.73 16 22 N -0.29 -4.43 10.97 31.21 0.34 -4.09 16 23 N -0.16 -2.66 7.37 33.32 0.25 -2.42 16 24 H 0.06 1.23 7.67 -51.93 -0.40 0.84 16 25 H 0.05 1.16 3.27 -51.92 -0.17 0.99 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.05 0.88 8.00 -51.93 -0.42 0.47 16 29 H 0.08 1.42 5.79 -51.93 -0.30 1.12 16 30 H 0.08 1.59 7.11 -51.93 -0.37 1.22 16 31 H 0.16 1.98 7.72 -52.49 -0.41 1.57 16 32 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.41 1.74 8.83 -185.15 -1.63 0.11 16 34 H 0.35 2.59 9.03 -181.36 -1.64 0.95 16 35 H 0.35 1.27 9.21 -181.37 -1.67 -0.40 16 LS Contribution 291.71 15.07 4.40 4.40 Total: -1.00 -35.22 291.71 -8.05 -43.27 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.74 Total: -0.99 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.34 Total: 2.38 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 1.69 Total: -53.97 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.22 -8.05 -43.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063098523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.110 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds