Wall clock time and date at job start Mon Mar 30 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47322 * 2 1 4 4 C 1.50696 * 109.47846 * 120.00528 * 2 1 3 5 5 H 1.07997 * 120.00529 * 119.99743 * 4 2 1 6 6 C 1.37881 * 119.99793 * 300.00040 * 4 2 1 7 7 N 1.31509 * 120.00247 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 119.99686 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47199 * 90.00387 * 8 6 4 10 10 H 1.48503 * 109.46675 * 210.00071 * 8 6 4 11 11 H 1.48496 * 109.47211 * 329.99612 * 8 6 4 12 12 N 1.46506 * 109.46852 * 240.00532 * 2 1 3 13 13 C 1.46500 * 120.00009 * 299.99640 * 12 2 1 14 14 C 1.34773 * 120.00038 * 120.00091 * 12 2 1 15 15 O 1.21560 * 120.00526 * 5.58029 * 14 12 2 16 16 C 1.47857 * 120.00313 * 185.58681 * 14 12 2 17 17 C 1.40070 * 120.10093 * 186.39870 * 16 14 12 18 18 C 1.38291 * 117.99297 * 179.97438 * 17 16 14 19 19 C 1.39597 * 118.02891 * 0.02562 * 18 17 16 20 20 N 1.38504 * 120.04394 * 179.97438 * 19 18 17 21 21 N 1.36602 * 120.00012 * 179.97438 * 20 19 18 22 22 N 1.32856 * 119.90780 * 359.97438 * 19 18 17 23 23 N 1.28356 * 122.15486 * 359.73397 * 22 19 18 24 24 H 1.09003 * 109.46810 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46768 * 299.99687 * 1 2 3 26 26 H 1.08997 * 109.47446 * 59.99346 * 1 2 3 27 27 H 0.97003 * 120.00485 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.46899 * 95.40387 * 13 12 2 29 29 H 1.08998 * 109.46909 * 215.40480 * 13 12 2 30 30 H 1.09001 * 109.47129 * 335.40280 * 13 12 2 31 31 H 1.07997 * 120.99843 * 359.95022 * 17 16 14 32 32 H 1.08001 * 120.98046 * 180.02562 * 18 17 16 33 33 H 0.97003 * 120.00455 * 0.02562 * 20 19 18 34 34 H 1.00906 * 110.99713 * 56.04553 * 21 20 19 35 35 H 1.00894 * 111.00056 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1375 -0.8597 3.5564 8 14 0.6260 1.2797 2.6541 9 1 -0.8019 0.8743 2.6995 10 1 0.9774 1.9951 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1707 1.0946 -1.8427 16 6 3.1838 -0.6913 -3.3496 17 6 4.0956 -0.0683 -4.2113 18 6 4.4307 -0.7208 -5.3836 19 6 3.8396 -1.9598 -5.6368 20 7 4.1450 -2.6493 -6.7986 21 7 3.5664 -3.8620 -7.0452 22 7 2.9837 -2.4766 -4.7619 23 7 2.6756 -1.8751 -3.6707 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.9035 -0.5282 4.4375 28 1 0.7920 -2.1447 -2.0796 29 1 2.5019 -2.6057 -1.9013 30 1 1.4359 -2.5724 -0.4762 31 1 4.5236 0.8928 -3.9675 32 1 5.1291 -0.2846 -6.0825 33 1 4.7703 -2.2716 -7.4367 34 1 2.5599 -3.7937 -7.0226 35 1 3.8831 -4.2415 -7.9248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063098523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:47 Heat of formation + Delta-G solvation = 54.742012 kcal Electronic energy + Delta-G solvation = -19973.203765 eV Core-core repulsion = 16814.937763 eV Total energy + Delta-G solvation = -3158.266002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17353 -40.49446 -38.17691 -37.34762 -34.86048 -34.12652 -33.39894 -31.95096 -29.07491 -27.76119 -27.17449 -26.17334 -24.64268 -23.22996 -20.82246 -19.65689 -19.15010 -18.81729 -17.95714 -17.70117 -17.21864 -16.71323 -16.42045 -16.01645 -15.36534 -15.30330 -14.86573 -14.64907 -14.34324 -14.11417 -13.85906 -13.57343 -13.50203 -13.17660 -12.93871 -12.68012 -12.21034 -12.04011 -11.54767 -11.35698 -11.24687 -10.89222 -10.82513 -10.77167 -10.55250 -9.43856 -8.57706 -8.32715 -6.38106 -0.32608 -0.09998 1.29568 1.38216 1.47807 1.71824 1.75945 2.15286 2.30494 2.72286 2.97905 3.02322 3.41692 3.69063 3.79303 3.98235 4.21914 4.46016 4.48945 4.59071 4.66872 4.74290 4.88035 4.91792 5.00333 5.02710 5.22687 5.32605 5.49369 5.58045 5.71394 6.19867 6.42082 6.61331 6.65820 7.02477 7.13579 7.29850 7.75787 8.83603 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.040543 B = 0.004607 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.452066 B = 6076.179147 C = 6325.005196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.230 3.770 3 H 0.039 0.961 4 C -0.529 4.529 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.944 3.056 9 H -0.253 1.253 10 H -0.294 1.294 11 H -0.258 1.258 12 N -0.576 5.576 13 C 0.102 3.898 14 C 0.560 3.440 15 O -0.585 6.585 16 C -0.048 4.048 17 C -0.033 4.033 18 C -0.161 4.161 19 C 0.351 3.649 20 N -0.536 5.536 21 N -0.611 5.611 22 N -0.321 5.321 23 N -0.173 5.173 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.269 0.731 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.168 0.832 32 H 0.201 0.799 33 H 0.433 0.567 34 H 0.350 0.650 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -1.945 -25.666 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.127 3.873 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.771 3.229 9 H -0.178 1.178 10 H -0.221 1.221 11 H -0.182 1.182 12 N -0.304 5.304 13 C -0.041 4.041 14 C 0.347 3.653 15 O -0.466 6.466 16 C -0.199 4.199 17 C -0.061 4.061 18 C -0.194 4.194 19 C 0.107 3.893 20 N -0.263 5.263 21 N -0.241 5.241 22 N -0.176 5.176 23 N -0.020 5.020 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.186 0.814 32 H 0.218 0.782 33 H 0.277 0.723 34 H 0.165 0.835 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.801 -3.059 -24.395 24.651 hybrid contribution 0.388 1.970 -0.642 2.108 sum 2.190 -1.089 -25.036 25.156 Atomic orbital electron populations 1.22310 0.96267 1.02358 1.00107 1.19097 0.92023 0.93605 0.82569 0.94272 1.21333 1.31949 1.13161 0.90315 0.94066 1.25678 0.97116 0.99710 0.95074 1.70009 1.47091 1.42204 0.98624 0.85927 0.79754 0.79907 0.77340 1.17804 1.22092 1.18237 1.47849 1.47830 1.13427 1.21334 1.21927 1.01580 0.79823 1.00727 1.18066 0.78685 0.85249 0.83294 1.90689 1.57124 1.20310 1.78470 1.22307 1.03229 0.96211 0.98146 1.22240 0.91811 1.00636 0.91446 1.21967 1.04109 0.93936 0.99414 1.20138 0.91434 0.89636 0.88138 1.42754 1.47320 1.17838 1.18374 1.59836 1.12805 1.09214 1.42199 1.73181 1.17042 1.27752 0.99596 1.73459 1.16302 1.04690 1.07538 0.91364 0.93488 0.92415 0.92178 0.91192 0.90153 0.92202 0.81441 0.78203 0.72254 0.83465 0.80567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.65 8.67 71.98 0.62 -6.03 16 2 C 0.23 11.71 2.22 44.24 0.10 11.81 16 3 H 0.04 2.18 5.97 -2.39 -0.01 2.17 16 4 C -0.53 -31.21 8.54 25.60 0.22 -30.99 16 5 H 0.04 2.68 7.67 -2.91 -0.02 2.66 16 6 C 0.02 1.36 5.45 84.66 0.46 1.82 16 7 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 8 Si 0.94 45.82 24.37 68.60 1.67 47.49 16 9 H -0.25 -11.24 6.87 99.48 0.68 -10.56 16 10 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.26 -12.22 6.53 99.48 0.65 -11.57 16 12 N -0.58 -26.32 2.75 -830.21 -2.29 -28.60 16 13 C 0.10 4.04 8.06 127.77 1.03 5.07 16 14 C 0.56 24.58 7.64 86.79 0.66 25.24 16 15 O -0.59 -28.69 15.75 -3.90 -0.06 -28.75 16 16 C -0.05 -1.65 6.64 42.00 0.28 -1.37 16 17 C -0.03 -0.84 9.71 22.73 0.22 -0.62 16 18 C -0.16 -2.68 10.04 22.61 0.23 -2.46 16 19 C 0.35 7.00 7.63 133.21 1.02 8.02 16 20 N -0.54 -6.10 6.61 -55.20 -0.36 -6.47 16 21 N -0.61 -6.84 10.05 37.02 0.37 -6.46 16 22 N -0.32 -9.09 10.97 -55.17 -0.61 -9.70 16 23 N -0.17 -5.77 7.37 -48.50 -0.36 -6.13 16 24 H 0.07 2.80 7.67 -2.39 -0.02 2.79 16 25 H 0.05 2.07 3.27 -2.38 -0.01 2.06 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.07 2.45 8.00 -2.39 -0.02 2.43 16 29 H 0.08 3.11 5.79 -2.39 -0.01 3.09 16 30 H 0.06 2.53 7.11 -2.39 -0.02 2.52 16 31 H 0.17 3.92 7.72 -2.91 -0.02 3.90 16 32 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.43 1.40 8.83 -215.49 -1.90 -0.50 16 34 H 0.35 4.23 9.03 -210.55 -1.90 2.33 16 35 H 0.38 1.30 9.21 -210.56 -1.94 -0.64 16 Total: -1.00 -80.19 291.71 -1.14 -81.33 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.65 Total: 5.66 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 4.84 Total: 10.50 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -2.94 Total: -116.22 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.06 Total: -28.75 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.49 kcal Total: -80.19 -1.14 -81.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063098523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.073 kcal (2) G-P(sol) polarization free energy of solvation -80.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds