Wall clock time and date at job start Mon Mar 30 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9 13 13 C 1.34029 * 122.79695 * 90.03090 * 12 11 10 14 14 O 1.21230 * 125.42731 * 0.02562 * 13 12 11 15 15 C 1.51560 * 109.15147 * 180.02562 * 13 12 11 16 16 C 1.53378 * 103.20154 * 359.97438 * 15 13 12 17 17 C 1.53407 * 110.94185 * 240.00841 * 16 15 13 18 18 C 1.55092 * 103.96816 * 215.17949 * 17 16 15 19 19 C 1.54967 * 102.85876 * 37.19813 * 18 17 16 20 20 C 1.53011 * 111.17007 * 120.41338 * 16 15 13 21 21 C 1.34187 * 122.80232 * 269.73432 * 12 11 10 22 22 O 1.21223 * 125.58568 * 0.02562 * 21 12 11 23 23 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 29 29 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 30 30 H 1.08994 * 110.67511 * 118.41672 * 15 13 12 31 31 H 1.09000 * 110.66897 * 241.39717 * 15 13 12 32 32 H 1.08996 * 110.52938 * 333.80137 * 17 16 15 33 33 H 1.09004 * 110.52649 * 96.56026 * 17 16 15 34 34 H 1.08998 * 110.73467 * 278.85893 * 18 17 16 35 35 H 1.08994 * 110.73585 * 155.54318 * 18 17 16 36 36 H 1.09004 * 110.48077 * 203.85360 * 19 18 17 37 37 H 1.09008 * 110.47888 * 81.22955 * 19 18 17 38 38 H 1.08997 * 110.10061 * 240.58455 * 20 16 15 39 39 H 1.09003 * 110.09647 * 2.13708 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 2.9039 -6.6533 1.1245 14 8 2.6109 -6.3127 2.2505 15 6 3.8617 -7.7719 0.7664 16 6 3.8543 -7.7618 -0.7674 17 6 3.3746 -9.1091 -1.3223 18 6 4.2160 -9.3044 -2.6104 19 6 5.5970 -8.7255 -2.2113 20 6 5.2561 -7.5067 -1.3250 21 6 2.9009 -6.6558 -1.1300 22 8 2.6071 -6.3190 -2.2568 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 -0.8905 27 1 2.8721 -3.6043 0.8895 28 1 0.8535 -5.0450 0.8885 29 1 0.8542 -5.0446 -0.8914 30 1 4.8605 -7.5603 1.1479 31 1 3.4991 -8.7261 1.1489 32 1 3.5751 -9.9092 -0.6098 33 1 2.3121 -9.0671 -1.5624 34 1 3.7873 -8.7426 -3.4402 35 1 4.2986 -10.3620 -2.8608 36 1 6.1489 -8.4106 -3.0970 37 1 6.1695 -9.4605 -1.6453 38 1 5.2613 -6.5955 -1.9231 39 1 5.9742 -7.4231 -0.5093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070205991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:50 Heat of formation + Delta-G solvation = -90.990610 kcal Electronic energy + Delta-G solvation = -20363.850586 eV Core-core repulsion = 17270.512736 eV Total energy + Delta-G solvation = -3093.337850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18541 -38.76626 -37.67998 -35.80009 -34.21628 -32.51279 -30.77545 -29.19720 -27.12662 -26.65266 -23.93103 -23.05150 -21.30553 -20.79044 -20.27973 -19.06155 -17.05131 -16.49936 -16.39731 -16.03049 -15.69860 -15.03381 -14.52466 -14.45994 -14.33457 -13.98843 -13.65739 -13.35705 -13.13676 -12.44548 -12.12453 -12.05124 -11.75822 -11.52932 -11.48111 -11.41150 -11.19300 -10.96137 -10.85872 -10.79006 -10.64599 -10.27076 -9.90832 -9.75104 -9.72237 -9.29350 -8.98922 -8.34956 -5.99621 -4.01931 1.56474 2.65714 2.78957 3.32334 3.39414 3.44000 3.82455 3.99411 4.17246 4.20691 4.47061 4.60974 4.83717 4.90772 5.08662 5.24761 5.28202 5.36120 5.37267 5.39816 5.47041 5.49994 5.61862 5.63093 5.72002 5.75461 5.84532 5.86485 6.02604 6.07254 6.45821 6.74119 7.00948 7.02529 7.41013 7.64656 7.77747 7.89130 7.99082 8.41379 9.04052 9.61994 11.11921 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.004208 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.878719 B = 6653.105762 C = 6948.108718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.095 3.905 12 N -0.571 5.571 13 C 0.523 3.477 14 O -0.480 6.480 15 C -0.148 4.148 16 C -0.104 4.104 17 C -0.101 4.101 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.105 4.105 21 C 0.537 3.463 22 O -0.471 6.471 23 H 0.260 0.740 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.831 -21.766 -2.200 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.024 4.024 12 N -0.313 5.313 13 C 0.311 3.689 14 O -0.352 6.352 15 C -0.188 4.188 16 C -0.107 4.107 17 C -0.139 4.139 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.143 4.143 21 C 0.324 3.676 22 O -0.342 6.342 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.324 -21.239 -2.201 23.300 hybrid contribution 0.299 1.144 0.069 1.185 sum 9.623 -20.095 -2.132 22.382 Atomic orbital electron populations 1.69968 1.06044 1.26549 1.50861 1.25015 0.94867 0.99282 0.95264 0.86519 0.80096 0.83705 0.77591 1.19759 1.20965 1.20956 1.21224 0.93041 0.90884 1.50591 0.92666 1.19038 0.93810 0.90911 0.97531 1.21962 0.99864 0.93144 1.00942 1.22158 0.91186 0.85005 1.04101 1.47072 1.42359 1.33094 1.08758 1.20871 0.80806 0.83117 0.84058 1.90781 1.58931 1.64268 1.21188 1.22730 1.01820 0.99701 0.94559 1.21573 0.97262 0.96322 0.95546 1.22281 1.00493 0.93280 0.97839 1.22577 0.95090 1.01070 0.97503 1.22396 0.97325 0.96699 0.99390 1.22107 0.92195 0.99991 0.99988 1.20397 0.80474 0.82508 0.84173 1.90754 1.58584 1.63870 1.20975 0.93010 0.96234 0.96228 0.92864 0.92818 0.89225 0.89272 0.86217 0.86328 0.89853 0.90925 0.90612 0.91081 0.91120 0.91227 0.90507 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.12 -2.65 5.48 -26.73 -0.15 -2.79 16 11 C 0.10 1.75 5.57 -4.05 -0.02 1.73 16 12 N -0.57 -8.93 2.57 -115.47 -0.30 -9.23 16 13 C 0.52 7.48 8.09 -10.90 -0.09 7.39 16 14 O -0.48 -8.54 17.49 5.60 0.10 -8.44 16 15 C -0.15 -1.32 6.30 -27.26 -0.17 -1.50 16 16 C -0.10 -1.01 0.90 -155.37 -0.14 -1.15 16 17 C -0.10 -0.79 5.89 -25.41 -0.15 -0.94 16 18 C -0.12 -0.93 6.92 -24.59 -0.17 -1.10 16 19 C -0.12 -0.83 6.85 -24.90 -0.17 -1.00 16 20 C -0.11 -0.91 6.17 -25.94 -0.16 -1.07 16 21 C 0.54 7.76 6.39 -11.37 -0.07 7.69 16 22 O -0.47 -8.27 17.50 5.61 0.10 -8.17 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.64 7.84 -51.93 -0.41 1.23 16 29 H 0.09 1.63 7.84 -51.93 -0.41 1.22 16 30 H 0.12 0.85 7.18 -51.93 -0.37 0.48 16 31 H 0.12 0.76 7.43 -51.93 -0.39 0.38 16 32 H 0.08 0.46 7.55 -51.93 -0.39 0.06 16 33 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.08 0.81 7.74 -51.93 -0.40 0.41 16 39 H 0.08 0.55 7.16 -51.93 -0.37 0.18 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -33.95 321.54 -7.45 -41.40 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -6.07 Total: -4.76 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.84 Total: -6.13 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.44 Total: -35.88 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.20 Total: -16.61 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.95 -7.45 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070205991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.589 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds