Wall clock time and date at job start Mon Mar 30 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9 13 13 C 1.34029 * 122.79695 * 90.03090 * 12 11 10 14 14 O 1.21230 * 125.42731 * 0.02562 * 13 12 11 15 15 C 1.51560 * 109.15147 * 180.02562 * 13 12 11 16 16 C 1.53378 * 103.20154 * 359.97438 * 15 13 12 17 17 C 1.53407 * 110.94185 * 240.00841 * 16 15 13 18 18 C 1.55092 * 103.96816 * 215.17949 * 17 16 15 19 19 C 1.54967 * 102.85876 * 37.19813 * 18 17 16 20 20 C 1.53011 * 111.17007 * 120.41338 * 16 15 13 21 21 C 1.34187 * 122.80232 * 269.73432 * 12 11 10 22 22 O 1.21223 * 125.58568 * 0.02562 * 21 12 11 23 23 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 29 29 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 30 30 H 1.08994 * 110.67511 * 118.41672 * 15 13 12 31 31 H 1.09000 * 110.66897 * 241.39717 * 15 13 12 32 32 H 1.08996 * 110.52938 * 333.80137 * 17 16 15 33 33 H 1.09004 * 110.52649 * 96.56026 * 17 16 15 34 34 H 1.08998 * 110.73467 * 278.85893 * 18 17 16 35 35 H 1.08994 * 110.73585 * 155.54318 * 18 17 16 36 36 H 1.09004 * 110.48077 * 203.85360 * 19 18 17 37 37 H 1.09008 * 110.47888 * 81.22955 * 19 18 17 38 38 H 1.08997 * 110.10061 * 240.58455 * 20 16 15 39 39 H 1.09003 * 110.09647 * 2.13708 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 2.9039 -6.6533 1.1245 14 8 2.6109 -6.3127 2.2505 15 6 3.8617 -7.7719 0.7664 16 6 3.8543 -7.7618 -0.7674 17 6 3.3746 -9.1091 -1.3223 18 6 4.2160 -9.3044 -2.6104 19 6 5.5970 -8.7255 -2.2113 20 6 5.2561 -7.5067 -1.3250 21 6 2.9009 -6.6558 -1.1300 22 8 2.6071 -6.3190 -2.2568 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 -0.8905 27 1 2.8721 -3.6043 0.8895 28 1 0.8535 -5.0450 0.8885 29 1 0.8542 -5.0446 -0.8914 30 1 4.8605 -7.5603 1.1479 31 1 3.4991 -8.7261 1.1489 32 1 3.5751 -9.9092 -0.6098 33 1 2.3121 -9.0671 -1.5624 34 1 3.7873 -8.7426 -3.4402 35 1 4.2986 -10.3620 -2.8608 36 1 6.1489 -8.4106 -3.0970 37 1 6.1695 -9.4605 -1.6453 38 1 5.2613 -6.5955 -1.9231 39 1 5.9742 -7.4231 -0.5093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070205991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:49 Heat of formation + Delta-G solvation = -112.292035 kcal Electronic energy + Delta-G solvation = -20364.774285 eV Core-core repulsion = 17270.512736 eV Total energy + Delta-G solvation = -3094.261549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.26828 -39.90393 -38.62401 -37.19530 -35.99234 -34.21779 -32.20148 -29.79348 -28.83912 -27.61684 -25.67290 -24.23993 -22.64720 -21.81495 -21.48858 -20.10919 -18.72413 -17.98197 -17.54396 -17.37112 -16.70076 -16.43049 -15.89878 -15.81231 -15.49107 -15.39824 -14.61835 -14.53540 -14.17009 -14.15831 -13.63892 -13.39724 -12.98763 -12.78153 -12.76652 -12.65721 -12.42995 -12.17506 -11.96255 -11.80650 -11.76853 -11.76041 -11.42273 -11.34828 -11.20048 -10.98078 -10.72552 -10.62735 -8.26288 -6.38402 0.43251 1.36099 1.37182 1.46859 1.51149 1.67261 2.36829 2.97581 3.06775 3.11387 3.39460 3.49726 3.85868 3.88396 4.05375 4.21698 4.29038 4.33802 4.34808 4.49168 4.59626 4.63166 4.71030 4.75108 4.82693 4.91207 4.93028 4.99058 5.07552 5.17651 5.26477 5.31915 5.38310 5.53428 5.54943 5.73425 5.83366 6.14613 6.29107 6.70356 6.76099 7.30897 8.86060 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.004208 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.878719 B = 6653.105762 C = 6948.108718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.102 4.102 11 C 0.103 3.897 12 N -0.580 5.580 13 C 0.517 3.483 14 O -0.521 6.521 15 C -0.128 4.128 16 C -0.094 4.094 17 C -0.099 4.099 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.108 4.108 21 C 0.529 3.471 22 O -0.512 6.512 23 H 0.266 0.734 24 H -0.003 1.003 25 H -0.002 1.002 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.294 -23.625 -1.586 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.140 4.140 11 C -0.019 4.019 12 N -0.322 5.322 13 C 0.308 3.692 14 O -0.395 6.395 15 C -0.167 4.167 16 C -0.097 4.097 17 C -0.137 4.137 18 C -0.165 4.165 19 C -0.152 4.152 20 C -0.146 4.146 21 C 0.320 3.680 22 O -0.385 6.385 23 H 0.075 0.925 24 H 0.015 0.985 25 H 0.017 0.983 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.168 0.832 31 H 0.175 0.825 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.808 -23.133 -1.592 26.021 hybrid contribution -0.526 1.728 -0.154 1.813 sum 11.282 -21.405 -1.746 24.260 Atomic orbital electron populations 1.70091 1.07784 1.27956 1.51242 1.26000 0.95856 1.03459 0.94391 0.85343 0.78906 0.78412 0.78050 1.18760 1.20037 1.19963 1.21623 0.93392 0.92276 1.51249 0.92515 1.18907 0.94142 0.92499 0.95337 1.21645 0.98664 0.93473 1.00226 1.21740 0.91473 0.84875 1.03765 1.47255 1.42146 1.32418 1.10338 1.21902 0.80728 0.83703 0.82833 1.90763 1.60452 1.65740 1.22527 1.22906 1.01624 0.98742 0.93400 1.21678 0.96441 0.95168 0.96389 1.22396 0.99638 0.92857 0.98783 1.22589 0.95295 1.02074 0.96504 1.22411 0.97099 0.96349 0.99311 1.22204 0.91858 0.99689 1.00857 1.21388 0.80424 0.83074 0.83128 1.90726 1.60060 1.65300 1.22460 0.92537 0.98470 0.98332 0.93532 0.93232 0.89446 0.89789 0.83182 0.82487 0.85941 0.92392 0.93480 0.88810 0.91430 0.88308 0.93398 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.23 13.29 21.45 0.28 -57.94 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.55 -32.88 9.11 25.60 0.23 -32.65 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.10 -4.66 5.48 30.60 0.17 -4.50 16 11 C 0.10 3.98 5.57 86.38 0.48 4.46 16 12 N -0.58 -18.33 2.57 -756.81 -1.94 -20.27 16 13 C 0.52 14.15 8.09 88.05 0.71 14.86 16 14 O -0.52 -18.29 17.49 -2.87 -0.05 -18.35 16 15 C -0.13 -1.77 6.30 30.25 0.19 -1.58 16 16 C -0.09 -1.59 0.90 -52.74 -0.05 -1.64 16 17 C -0.10 -1.22 5.89 31.45 0.19 -1.04 16 18 C -0.13 -1.57 6.92 31.98 0.22 -1.35 16 19 C -0.11 -1.19 6.85 31.78 0.22 -0.97 16 20 C -0.11 -1.58 6.17 31.11 0.19 -1.38 16 21 C 0.53 15.35 6.39 87.67 0.56 15.91 16 22 O -0.51 -18.78 17.50 -2.85 -0.05 -18.83 16 23 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 24 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.09 3.38 7.84 -2.39 -0.02 3.37 16 29 H 0.08 3.29 7.84 -2.39 -0.02 3.27 16 30 H 0.15 1.31 7.18 -2.39 -0.02 1.29 16 31 H 0.16 1.10 7.43 -2.39 -0.02 1.08 16 32 H 0.12 0.62 7.55 -2.39 -0.02 0.60 16 33 H 0.06 0.91 7.83 -2.38 -0.02 0.89 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.05 0.99 7.74 -2.39 -0.02 0.97 16 39 H 0.11 0.99 7.16 -2.39 -0.02 0.97 16 Total: -1.00 -77.78 321.54 5.02 -72.75 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.03 Total: 2.47 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 3.72 Total: -7.58 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -1.66 Total: -78.22 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.10 Total: -37.18 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.78 5.02 -72.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070205991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.538 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds