Wall clock time and date at job start Mon Mar 30 2020 05:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31399 * 1 3 3 Si 1.86802 * 119.99675 * 2 1 4 4 H 1.48498 * 109.46791 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47210 * 300.00345 * 3 2 1 6 6 H 1.48501 * 109.47145 * 60.00798 * 3 2 1 7 7 C 1.38984 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00268 * 179.97438 * 7 2 1 9 9 N 1.36962 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99853 * 179.97438 * 9 7 2 11 11 O 1.21620 * 120.00204 * 0.02562 * 10 9 7 12 12 C 1.47438 * 119.99816 * 179.97438 * 10 9 7 13 13 C 1.36666 * 125.77795 * 180.02562 * 12 10 9 14 14 N 1.34846 * 106.82499 * 179.71616 * 13 12 10 15 15 C 1.46493 * 126.59136 * 180.25981 * 14 13 12 16 16 C 1.53128 * 109.52404 * 34.87830 * 15 14 13 17 17 C 1.53047 * 109.27252 * 182.50425 * 16 15 14 18 18 N 1.46843 * 109.57553 * 59.08415 * 17 16 15 19 19 C 1.46844 * 111.19973 * 298.28441 * 18 17 16 20 20 C 1.53036 * 109.52057 * 61.74527 * 19 18 17 21 21 N 1.40205 * 106.81566 * 0.26553 * 14 13 12 22 22 N 1.28758 * 108.38392 * 359.97438 * 21 14 13 23 23 H 0.97005 * 120.00476 * 359.97438 * 1 2 3 24 24 H 0.96997 * 119.99705 * 0.02562 * 9 7 2 25 25 H 1.08002 * 126.59005 * 359.97438 * 13 12 10 26 26 H 1.09005 * 109.52515 * 155.00317 * 15 14 13 27 27 H 1.09001 * 109.50056 * 302.38131 * 16 15 14 28 28 H 1.08995 * 109.50114 * 62.49978 * 16 15 14 29 29 H 1.09000 * 109.40554 * 299.06147 * 17 16 15 30 30 H 1.09004 * 109.45677 * 179.13552 * 17 16 15 31 31 H 1.00898 * 111.00020 * 62.38714 * 18 17 16 32 32 H 1.09001 * 109.46313 * 301.72811 * 19 18 17 33 33 H 1.09001 * 109.46118 * 181.76266 * 19 18 17 34 34 H 1.08999 * 109.50039 * 180.87824 * 20 19 18 35 35 H 1.09004 * 109.53813 * 60.78240 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7079 1.3465 -0.0006 5 1 1.8891 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0090 -1.2036 -0.0005 8 1 3.0890 -1.2036 -0.0010 9 7 1.3242 -2.3898 -0.0005 10 6 1.9982 -3.5569 -0.0016 11 8 3.2144 -3.5569 -0.0021 12 6 1.2610 -4.8338 -0.0010 13 6 1.8218 -6.0801 -0.0014 14 7 0.8048 -6.9657 0.0057 15 6 0.9187 -8.4261 0.0134 16 6 2.1408 -8.8398 0.8382 17 6 2.2904 -10.3622 0.7908 18 7 2.4461 -10.7981 -0.6028 19 6 1.2633 -10.4539 -1.4021 20 6 1.0839 -8.9342 -1.4216 21 7 -0.3824 -6.2199 0.0043 22 7 -0.0764 -4.9692 -0.0028 23 1 -0.4851 0.8400 0.0004 24 1 0.3542 -2.3898 -0.0005 25 1 2.8767 -6.3114 -0.0027 26 1 0.0197 -8.8593 0.4520 27 1 3.0346 -8.3740 0.4230 28 1 2.0085 -8.5181 1.8711 29 1 1.4027 -10.8269 1.2198 30 1 3.1686 -10.6588 1.3644 31 1 3.2837 -10.4113 -1.0113 32 1 0.3804 -10.9182 -0.9629 33 1 1.3954 -10.8171 -2.4213 34 1 0.1970 -8.6799 -2.0019 35 1 1.9602 -8.4694 -1.8736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071220912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:35 Heat of formation + Delta-G solvation = 54.099626 kcal Electronic energy + Delta-G solvation = -19588.814161 eV Core-core repulsion = 16430.520304 eV Total energy + Delta-G solvation = -3158.293858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78908 -39.21979 -37.77519 -34.43112 -33.99633 -31.45187 -31.30624 -30.58207 -29.93946 -25.51273 -24.46418 -23.54700 -22.55695 -21.93588 -20.39332 -19.58625 -18.07391 -17.43280 -16.32760 -15.60109 -15.37959 -15.19154 -14.81238 -14.57793 -14.46133 -13.94638 -13.83032 -13.43494 -13.05233 -12.89155 -12.77622 -12.34927 -11.78784 -11.71275 -11.59272 -11.30838 -11.14031 -11.12015 -10.75593 -10.35428 -10.24522 -9.96191 -9.59900 -8.97459 -8.69709 -8.63678 -8.01522 -6.47321 -3.84185 1.55344 2.25604 2.45228 3.20079 3.25532 3.32923 3.81783 3.96910 4.14172 4.22122 4.34027 4.50450 4.54630 4.66359 4.76335 4.83848 4.95100 5.03353 5.19475 5.31590 5.33903 5.41404 5.44382 5.49644 5.54267 5.63090 5.80107 5.95139 6.49008 6.62521 6.72611 6.87519 7.49566 7.99948 8.40896 8.61104 9.10280 9.51201 10.02145 10.69038 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.049204 B = 0.003751 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.928396 B = 7462.775981 C = 7747.430163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.300 4.300 8 H 0.109 0.891 9 N -0.530 5.530 10 C 0.504 3.496 11 O -0.601 6.601 12 C -0.057 4.057 13 C 0.063 3.937 14 N -0.366 5.366 15 C 0.158 3.842 16 C -0.173 4.173 17 C 0.063 3.937 18 N -0.686 5.686 19 C 0.062 3.938 20 C -0.171 4.171 21 N -0.085 5.085 22 N -0.213 5.213 23 H 0.275 0.725 24 H 0.402 0.598 25 H 0.193 0.807 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.345 0.655 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 -20.075 -0.486 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.430 4.430 8 H 0.126 0.874 9 N -0.162 5.162 10 C 0.289 3.711 11 O -0.488 6.488 12 C -0.196 4.196 13 C -0.093 4.093 14 N -0.153 5.153 15 C 0.055 3.945 16 C -0.213 4.213 17 C -0.067 4.067 18 N -0.315 5.315 19 C -0.068 4.068 20 C -0.211 4.211 21 N -0.063 5.063 22 N -0.085 5.085 23 H 0.085 0.915 24 H 0.237 0.763 25 H 0.210 0.790 26 H 0.127 0.873 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.163 0.837 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.914 -20.620 -0.356 20.643 hybrid contribution 0.894 1.823 -0.095 2.033 sum 1.808 -18.797 -0.451 18.889 Atomic orbital electron populations 1.69662 1.06109 1.28525 1.48038 1.25412 0.95670 1.00086 0.96723 0.85730 0.79728 0.80624 0.77849 1.18980 1.20550 1.20545 1.19873 0.93659 0.82011 1.47487 0.87355 1.41788 1.10064 1.04219 1.60174 1.16357 0.86399 0.81549 0.86837 1.90607 1.12533 1.86495 1.59123 1.22058 0.89177 0.96042 1.12344 1.23069 0.95844 0.88970 1.01409 1.50542 1.06128 1.07404 1.51223 1.21456 1.00998 0.74529 0.97492 1.22777 0.97378 0.99592 1.01562 1.22026 1.03471 0.90752 0.90496 1.60616 1.05379 1.62906 1.02571 1.22035 0.94128 0.91594 0.99081 1.22777 1.04260 0.98717 0.95350 1.81868 1.04113 0.96570 1.23766 1.74684 1.13614 1.09593 1.10655 0.91513 0.76288 0.79001 0.87325 0.90332 0.89777 0.90240 0.89475 0.83669 0.90233 0.89652 0.89949 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.69 13.05 55.50 0.72 -23.97 16 2 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.57 9.68 -14.98 -0.15 -8.71 16 8 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 9 N -0.53 -14.55 5.28 -11.95 -0.06 -14.61 16 10 C 0.50 13.02 7.77 -12.51 -0.10 12.92 16 11 O -0.60 -16.70 16.44 5.26 0.09 -16.61 16 12 C -0.06 -1.23 6.99 -83.55 -0.58 -1.81 16 13 C 0.06 1.06 10.40 -16.80 -0.17 0.88 16 14 N -0.37 -5.41 3.55 -54.41 -0.19 -5.60 16 15 C 0.16 1.54 3.30 -67.81 -0.22 1.31 16 16 C -0.17 -1.32 5.07 -26.64 -0.14 -1.46 16 17 C 0.06 0.37 6.55 -3.83 -0.03 0.35 16 18 N -0.69 -4.32 6.87 -113.81 -0.78 -5.10 16 19 C 0.06 0.39 6.55 -3.84 -0.03 0.36 16 20 C -0.17 -1.41 5.69 -26.65 -0.15 -1.56 16 21 N -0.08 -1.57 13.78 60.35 0.83 -0.74 16 22 N -0.21 -4.59 12.04 32.84 0.40 -4.20 16 23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.40 11.05 7.58 -40.82 -0.31 10.74 16 25 H 0.19 2.73 7.28 -52.49 -0.38 2.35 16 26 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 0.61 7.11 -51.93 -0.37 0.24 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.35 1.95 8.86 -39.29 -0.35 1.61 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -32.96 300.80 -5.45 -38.41 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.30 Total: 9.09 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.66 Total: 2.86 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.91 Total: -54.22 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.09 Total: -16.61 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.96 -5.45 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071220912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.512 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds