Wall clock time and date at job start Mon Mar 30 2020 05:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31399 * 1 3 3 Si 1.86802 * 119.99675 * 2 1 4 4 H 1.48498 * 109.46791 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47210 * 300.00345 * 3 2 1 6 6 H 1.48501 * 109.47145 * 60.00798 * 3 2 1 7 7 C 1.38984 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00268 * 179.97438 * 7 2 1 9 9 N 1.36962 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99853 * 179.97438 * 9 7 2 11 11 O 1.21620 * 120.00204 * 0.02562 * 10 9 7 12 12 C 1.47438 * 119.99816 * 179.97438 * 10 9 7 13 13 C 1.36666 * 125.77795 * 180.02562 * 12 10 9 14 14 N 1.34846 * 106.82499 * 179.71616 * 13 12 10 15 15 C 1.46493 * 126.59136 * 180.25981 * 14 13 12 16 16 C 1.53128 * 109.52404 * 34.87830 * 15 14 13 17 17 C 1.53047 * 109.27252 * 182.50425 * 16 15 14 18 18 N 1.46843 * 109.57553 * 59.08415 * 17 16 15 19 19 C 1.46844 * 111.19973 * 298.28441 * 18 17 16 20 20 C 1.53036 * 109.52057 * 61.74527 * 19 18 17 21 21 N 1.40205 * 106.81566 * 0.26553 * 14 13 12 22 22 N 1.28758 * 108.38392 * 359.97438 * 21 14 13 23 23 H 0.97005 * 120.00476 * 359.97438 * 1 2 3 24 24 H 0.96997 * 119.99705 * 0.02562 * 9 7 2 25 25 H 1.08002 * 126.59005 * 359.97438 * 13 12 10 26 26 H 1.09005 * 109.52515 * 155.00317 * 15 14 13 27 27 H 1.09001 * 109.50056 * 302.38131 * 16 15 14 28 28 H 1.08995 * 109.50114 * 62.49978 * 16 15 14 29 29 H 1.09000 * 109.40554 * 299.06147 * 17 16 15 30 30 H 1.09004 * 109.45677 * 179.13552 * 17 16 15 31 31 H 1.00898 * 111.00020 * 62.38714 * 18 17 16 32 32 H 1.09001 * 109.46313 * 301.72811 * 19 18 17 33 33 H 1.09001 * 109.46118 * 181.76266 * 19 18 17 34 34 H 1.08999 * 109.50039 * 180.87824 * 20 19 18 35 35 H 1.09004 * 109.53813 * 60.78240 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7079 1.3465 -0.0006 5 1 1.8891 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0090 -1.2036 -0.0005 8 1 3.0890 -1.2036 -0.0010 9 7 1.3242 -2.3898 -0.0005 10 6 1.9982 -3.5569 -0.0016 11 8 3.2144 -3.5569 -0.0021 12 6 1.2610 -4.8338 -0.0010 13 6 1.8218 -6.0801 -0.0014 14 7 0.8048 -6.9657 0.0057 15 6 0.9187 -8.4261 0.0134 16 6 2.1408 -8.8398 0.8382 17 6 2.2904 -10.3622 0.7908 18 7 2.4461 -10.7981 -0.6028 19 6 1.2633 -10.4539 -1.4021 20 6 1.0839 -8.9342 -1.4216 21 7 -0.3824 -6.2199 0.0043 22 7 -0.0764 -4.9692 -0.0028 23 1 -0.4851 0.8400 0.0004 24 1 0.3542 -2.3898 -0.0005 25 1 2.8767 -6.3114 -0.0027 26 1 0.0197 -8.8593 0.4520 27 1 3.0346 -8.3740 0.4230 28 1 2.0085 -8.5181 1.8711 29 1 1.4027 -10.8269 1.2198 30 1 3.1686 -10.6588 1.3644 31 1 3.2837 -10.4113 -1.0113 32 1 0.3804 -10.9182 -0.9629 33 1 1.3954 -10.8171 -2.4213 34 1 0.1970 -8.6799 -2.0019 35 1 1.9602 -8.4694 -1.8736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071220912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:34 Heat of formation + Delta-G solvation = 27.322216 kcal Electronic energy + Delta-G solvation = -19589.975317 eV Core-core repulsion = 16430.520304 eV Total energy + Delta-G solvation = -3159.455013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.23248 -40.10485 -39.63924 -36.09872 -35.48357 -33.36226 -32.14800 -31.80850 -31.19156 -27.40278 -25.54613 -24.48840 -23.86789 -23.00079 -21.34744 -21.21388 -20.10868 -18.84674 -17.42705 -17.07847 -16.82255 -16.39686 -15.95851 -15.76771 -15.55190 -15.41984 -15.26086 -14.77120 -14.40221 -14.26250 -13.57026 -13.38095 -13.30018 -12.96586 -12.93368 -12.51043 -12.39740 -12.21996 -12.07625 -12.06929 -11.72781 -11.59997 -11.13019 -10.71672 -10.29157 -10.09036 -9.49135 -8.53084 -6.01791 0.16072 0.74480 1.06583 1.42462 1.44867 1.59052 2.27140 2.39298 2.92836 3.24580 3.25413 3.31102 3.39350 3.51169 3.81744 3.92177 3.94115 4.05189 4.15532 4.26006 4.34522 4.48731 4.62215 4.75821 4.84343 4.89888 4.91740 5.03741 5.15466 5.35524 5.50575 5.89770 6.00275 6.42976 6.44462 6.92264 7.02182 7.43917 7.94259 8.64528 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.049204 B = 0.003751 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.928396 B = 7462.775981 C = 7747.430163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.014 4.014 3 Si 1.006 2.994 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.093 0.907 9 N -0.546 5.546 10 C 0.508 3.492 11 O -0.626 6.626 12 C -0.096 4.096 13 C 0.094 3.906 14 N -0.342 5.342 15 C 0.145 3.855 16 C -0.167 4.167 17 C 0.069 3.931 18 N -0.689 5.689 19 C 0.070 3.930 20 C -0.163 4.163 21 N -0.092 5.092 22 N -0.242 5.242 23 H 0.282 0.718 24 H 0.398 0.602 25 H 0.224 0.776 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.350 0.650 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 -21.846 -0.447 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.828 3.172 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.111 0.889 9 N -0.179 5.179 10 C 0.294 3.706 11 O -0.514 6.514 12 C -0.236 4.236 13 C -0.063 4.063 14 N -0.128 5.128 15 C 0.045 3.955 16 C -0.207 4.207 17 C -0.061 4.061 18 N -0.317 5.317 19 C -0.060 4.060 20 C -0.204 4.204 21 N -0.071 5.071 22 N -0.114 5.114 23 H 0.091 0.909 24 H 0.232 0.768 25 H 0.240 0.760 26 H 0.138 0.862 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.169 0.831 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.662 -22.447 -0.320 22.511 hybrid contribution 0.648 2.097 -0.112 2.197 sum 2.310 -20.351 -0.432 20.486 Atomic orbital electron populations 1.69744 1.07442 1.29846 1.48318 1.26352 0.96572 1.03182 0.95375 0.84690 0.78193 0.75845 0.78457 1.18889 1.19382 1.19367 1.19942 0.93272 0.83346 1.50261 0.88884 1.41857 1.09780 1.04713 1.61505 1.16878 0.86368 0.82512 0.84804 1.90560 1.13684 1.87332 1.59791 1.21637 0.89710 0.95737 1.16518 1.23374 0.97220 0.87589 0.98127 1.50944 1.04522 1.09059 1.48275 1.22081 1.02856 0.71218 0.99354 1.22809 0.96051 1.01046 1.00809 1.22052 1.04440 0.89076 0.90539 1.60633 1.05572 1.62782 1.02748 1.22031 0.94477 0.89646 0.99895 1.22768 1.03592 1.00339 0.93714 1.81763 1.05598 0.95900 1.23849 1.74652 1.13847 1.11144 1.11760 0.90860 0.76753 0.76000 0.86227 0.90068 0.90035 0.89639 0.88136 0.83106 0.89574 0.88586 0.90996 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.95 13.05 21.67 0.28 -51.67 16 2 C -0.01 -0.76 5.50 84.94 0.47 -0.30 16 3 Si 1.01 43.22 29.55 68.60 2.03 45.24 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.34 -20.00 9.68 84.07 0.81 -19.19 16 8 H 0.09 5.64 7.15 -2.91 -0.02 5.62 16 9 N -0.55 -31.19 5.28 -309.96 -1.64 -32.82 16 10 C 0.51 27.02 7.77 86.67 0.67 27.69 16 11 O -0.63 -35.47 16.44 -4.10 -0.07 -35.54 16 12 C -0.10 -4.19 6.99 40.80 0.29 -3.91 16 13 C 0.09 3.06 10.40 83.86 0.87 3.93 16 14 N -0.34 -9.56 3.55 -326.07 -1.16 -10.71 16 15 C 0.14 2.46 3.30 45.08 0.15 2.61 16 16 C -0.17 -2.05 5.07 30.65 0.16 -1.90 16 17 C 0.07 0.59 6.55 86.33 0.57 1.15 16 18 N -0.69 -6.38 6.87 -514.00 -3.53 -9.91 16 19 C 0.07 0.66 6.55 86.33 0.57 1.22 16 20 C -0.16 -2.31 5.69 30.65 0.17 -2.14 16 21 N -0.09 -3.38 13.78 37.02 0.51 -2.87 16 22 N -0.24 -10.60 12.04 -50.00 -0.60 -11.20 16 23 H 0.28 14.74 8.31 -92.70 -0.77 13.97 16 24 H 0.40 22.94 7.58 -92.71 -0.70 22.23 16 25 H 0.22 5.76 7.28 -2.91 -0.02 5.74 16 26 H 0.12 1.86 8.14 -2.38 -0.02 1.85 16 27 H 0.08 0.99 7.11 -2.39 -0.02 0.98 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.35 2.82 8.86 -89.70 -0.79 2.03 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -73.12 300.80 0.19 -72.93 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.36 Total: 27.38 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 4.72 Total: 9.18 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -6.13 Total: -119.19 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.07 Total: -35.54 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.12 0.19 -72.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071220912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.253 kcal (2) G-P(sol) polarization free energy of solvation -73.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds