Wall clock time and date at job start Mon Mar 30 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00242 * 2 1 4 4 C 1.50699 * 109.46701 * 66.05236 * 3 2 1 5 5 H 1.08000 * 120.00217 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99976 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99905 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00268 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47136 * 59.99663 * 8 6 4 10 10 H 1.48502 * 109.47283 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47131 * 300.00043 * 8 6 4 12 12 C 1.46900 * 110.99795 * 236.04943 * 2 1 3 13 13 C 1.52997 * 109.47229 * 293.95460 * 12 2 1 14 14 H 1.09002 * 110.66932 * 308.21584 * 13 12 2 15 15 C 1.54704 * 110.75153 * 184.99649 * 13 12 2 16 16 C 1.51644 * 101.94409 * 216.41399 * 15 13 12 17 17 C 1.37757 * 132.14723 * 195.48829 * 16 15 13 18 18 C 1.38534 * 119.95987 * 179.43708 * 17 16 15 19 19 F 1.35102 * 120.13941 * 179.97438 * 18 17 16 20 20 C 1.38468 * 119.71770 * 359.93655 * 18 17 16 21 21 C 1.37935 * 120.32043 * 0.19906 * 20 18 17 22 22 C 1.38864 * 107.05023 * 15.26060 * 16 15 13 23 23 O 1.36191 * 111.21646 * 1.26094 * 22 16 15 24 24 H 1.09003 * 109.47597 * 183.95604 * 1 2 3 25 25 H 1.09004 * 109.47100 * 303.94548 * 1 2 3 26 26 H 1.09000 * 109.47349 * 63.94990 * 1 2 3 27 27 H 1.08995 * 109.47167 * 186.04630 * 3 2 1 28 28 H 1.08998 * 109.47321 * 306.05229 * 3 2 1 29 29 H 0.97000 * 120.00068 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47350 * 173.95345 * 12 2 1 31 31 H 1.09005 * 109.47363 * 53.95149 * 12 2 1 32 32 H 1.09003 * 110.93350 * 98.25301 * 15 13 12 33 33 H 1.09002 * 110.93897 * 334.58155 * 15 13 12 34 34 H 1.08003 * 120.01756 * 359.46614 * 17 16 15 35 35 H 1.07996 * 119.84306 * 180.22310 * 20 18 17 36 36 H 1.08002 * 119.86353 * 179.75966 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0741 1.5113 2.0486 6 6 2.0269 3.3493 1.5287 7 7 2.7120 4.0018 0.6151 8 14 1.5821 4.1870 3.1379 9 1 2.1738 3.4299 4.2701 10 1 2.1144 5.5733 3.1380 11 1 0.1048 4.2234 3.2852 12 6 1.9953 -0.7659 -1.1376 13 6 1.6313 -2.2425 -0.9705 14 1 1.9306 -2.6036 0.0135 15 6 2.2774 -3.0962 -2.0873 16 6 1.2029 -4.1332 -2.3511 17 6 1.2264 -5.3409 -3.0133 18 6 0.0754 -6.1075 -3.0951 19 9 0.0942 -7.2923 -3.7441 20 6 -1.0942 -5.6547 -2.5083 21 6 -1.1184 -4.4441 -1.8476 22 6 0.0336 -3.6659 -1.7656 23 8 0.2249 -2.4481 -1.1866 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5739 0.8526 26 1 -0.3634 0.4513 -0.9232 27 1 3.0797 1.3443 -0.1082 28 1 1.5611 1.9274 -0.8308 29 1 2.9860 4.9181 0.7769 30 1 3.0797 -0.6611 -1.1757 31 1 1.5609 -0.3872 -2.0629 32 1 3.1954 -3.5672 -1.7357 33 1 2.4658 -2.4954 -2.9771 34 1 2.1417 -5.6900 -3.4679 35 1 -1.9917 -6.2524 -2.5678 36 1 -2.0356 -4.0962 -1.3959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090893103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:19 Heat of formation + Delta-G solvation = -45.744246 kcal Electronic energy + Delta-G solvation = -19420.567777 eV Core-core repulsion = 16205.731652 eV Total energy + Delta-G solvation = -3214.836126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.98453 -41.20946 -37.64819 -36.13965 -33.07726 -32.49493 -30.23955 -29.74803 -27.21771 -26.40725 -24.22777 -22.61806 -21.98334 -21.55243 -20.23337 -17.67774 -17.37999 -17.17750 -16.41990 -15.80146 -15.52204 -14.89423 -14.75136 -14.38302 -14.00940 -13.87427 -13.53183 -13.16424 -13.06636 -12.92143 -12.43698 -12.16544 -11.85130 -11.76527 -11.45462 -11.12574 -10.96318 -10.81429 -10.62133 -10.55142 -10.29825 -9.83537 -9.23913 -9.23428 -8.44847 -8.12130 -7.30703 -6.04228 -4.05523 0.94390 1.02613 3.16366 3.33230 3.37005 3.39635 3.40202 3.94206 4.35151 4.36097 4.46899 4.63903 4.86438 4.97394 5.06820 5.23092 5.27480 5.32808 5.45796 5.53828 5.66638 5.76682 5.88768 5.94913 5.97370 6.14193 6.17710 6.37364 6.44873 6.51210 6.87029 7.16808 7.24356 7.31718 7.77306 8.04224 8.16583 8.51120 9.01786 9.58672 11.06770 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.057057 B = 0.003432 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.615420 B = 8157.435059 C = 8487.577673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.540 5.540 3 C 0.192 3.808 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.058 3.942 13 C 0.088 3.912 14 H 0.098 0.902 15 C -0.106 4.106 16 C -0.148 4.148 17 C -0.103 4.103 18 C 0.058 3.942 19 F -0.142 7.142 20 C -0.118 4.118 21 C -0.117 4.117 22 C 0.106 3.894 23 O -0.286 6.286 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.009 0.991 27 H 0.030 0.970 28 H -0.008 1.008 29 H 0.262 0.738 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -18.165 -7.292 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.264 5.264 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.071 4.071 13 C 0.032 3.968 14 H 0.116 0.884 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.122 4.122 18 C 0.039 3.961 19 F -0.121 7.121 20 C -0.136 4.136 21 C -0.135 4.135 22 C 0.060 3.940 23 O -0.200 6.200 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.010 0.990 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.685 -18.049 -6.840 19.650 hybrid contribution -0.288 0.706 -0.137 0.774 sum -3.973 -17.343 -6.976 19.111 Atomic orbital electron populations 1.22356 0.88195 1.00595 1.00122 1.62159 1.07728 1.17937 1.38616 1.19738 0.95309 0.81433 0.96799 1.21120 1.34890 0.96958 1.01676 0.91843 1.24990 0.95279 0.97320 0.97039 1.69946 1.38360 1.11503 1.34131 0.86543 0.78731 0.78307 0.83724 1.20136 1.21363 1.20257 1.22210 1.00638 0.90084 0.94200 1.23644 0.77161 0.97310 0.98639 0.88436 1.21894 0.97587 0.94803 1.00065 1.20658 0.96577 0.96282 1.01401 1.20185 0.97891 0.93606 1.00546 1.17346 0.94997 0.83758 1.00040 1.91480 1.97195 1.43993 1.79423 1.20804 0.97472 0.96613 0.98747 1.20098 0.97507 0.93128 1.02795 1.19813 0.94541 0.86622 0.93064 1.87111 1.27679 1.29319 1.75846 0.91860 0.91093 0.97213 0.95230 0.99049 0.92852 0.89213 0.94707 0.88604 0.88664 0.84680 0.84136 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 8.84 60.06 0.53 1.25 16 2 N -0.54 -11.54 4.75 -244.37 -1.16 -12.71 16 3 C 0.19 4.96 4.72 -4.98 -0.02 4.94 16 4 C -0.51 -14.23 8.46 -34.44 -0.29 -14.52 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 C 0.06 0.98 4.75 -3.83 -0.02 0.96 16 13 C 0.09 1.25 3.62 -25.84 -0.09 1.16 16 14 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 15 C -0.11 -1.18 6.65 -26.52 -0.18 -1.36 16 16 C -0.15 -1.77 6.27 -104.10 -0.65 -2.42 16 17 C -0.10 -1.11 10.02 -39.65 -0.40 -1.51 16 18 C 0.06 0.64 7.31 -39.39 -0.29 0.35 16 19 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 20 C -0.12 -1.18 10.00 -39.61 -0.40 -1.58 16 21 C -0.12 -1.30 10.06 -39.31 -0.40 -1.70 16 22 C 0.11 1.40 7.03 -38.97 -0.27 1.12 16 23 O -0.29 -4.35 7.97 -20.35 -0.16 -4.51 16 24 H 0.06 1.16 5.50 -51.93 -0.29 0.87 16 25 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 28 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 31 H 0.03 0.61 8.12 -51.93 -0.42 0.18 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.00 7.92 -51.93 -0.41 0.59 16 34 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -30.30 303.64 -8.33 -38.63 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.76 Total: -3.25 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.57 Total: -11.85 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.43 Total: -38.59 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.16 Total: -4.51 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.30 -8.33 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090893103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.114 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds