Wall clock time and date at job start Mon Mar 30 2020 05:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00242 * 2 1 4 4 C 1.50699 * 109.46701 * 66.05236 * 3 2 1 5 5 H 1.08000 * 120.00217 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99976 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99905 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00268 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47136 * 59.99663 * 8 6 4 10 10 H 1.48502 * 109.47283 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47131 * 300.00043 * 8 6 4 12 12 C 1.46900 * 110.99795 * 236.04943 * 2 1 3 13 13 C 1.52997 * 109.47229 * 293.95460 * 12 2 1 14 14 H 1.09002 * 110.66932 * 308.21584 * 13 12 2 15 15 C 1.54704 * 110.75153 * 184.99649 * 13 12 2 16 16 C 1.51644 * 101.94409 * 216.41399 * 15 13 12 17 17 C 1.37757 * 132.14723 * 195.48829 * 16 15 13 18 18 C 1.38534 * 119.95987 * 179.43708 * 17 16 15 19 19 F 1.35102 * 120.13941 * 179.97438 * 18 17 16 20 20 C 1.38468 * 119.71770 * 359.93655 * 18 17 16 21 21 C 1.37935 * 120.32043 * 0.19906 * 20 18 17 22 22 C 1.38864 * 107.05023 * 15.26060 * 16 15 13 23 23 O 1.36191 * 111.21646 * 1.26094 * 22 16 15 24 24 H 1.09003 * 109.47597 * 183.95604 * 1 2 3 25 25 H 1.09004 * 109.47100 * 303.94548 * 1 2 3 26 26 H 1.09000 * 109.47349 * 63.94990 * 1 2 3 27 27 H 1.08995 * 109.47167 * 186.04630 * 3 2 1 28 28 H 1.08998 * 109.47321 * 306.05229 * 3 2 1 29 29 H 0.97000 * 120.00068 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47350 * 173.95345 * 12 2 1 31 31 H 1.09005 * 109.47363 * 53.95149 * 12 2 1 32 32 H 1.09003 * 110.93350 * 98.25301 * 15 13 12 33 33 H 1.09002 * 110.93897 * 334.58155 * 15 13 12 34 34 H 1.08003 * 120.01756 * 359.46614 * 17 16 15 35 35 H 1.07996 * 119.84306 * 180.22310 * 20 18 17 36 36 H 1.08002 * 119.86353 * 179.75966 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0741 1.5113 2.0486 6 6 2.0269 3.3493 1.5287 7 7 2.7120 4.0018 0.6151 8 14 1.5821 4.1870 3.1379 9 1 2.1738 3.4299 4.2701 10 1 2.1144 5.5733 3.1380 11 1 0.1048 4.2234 3.2852 12 6 1.9953 -0.7659 -1.1376 13 6 1.6313 -2.2425 -0.9705 14 1 1.9306 -2.6036 0.0135 15 6 2.2774 -3.0962 -2.0873 16 6 1.2029 -4.1332 -2.3511 17 6 1.2264 -5.3409 -3.0133 18 6 0.0754 -6.1075 -3.0951 19 9 0.0942 -7.2923 -3.7441 20 6 -1.0942 -5.6547 -2.5083 21 6 -1.1184 -4.4441 -1.8476 22 6 0.0336 -3.6659 -1.7656 23 8 0.2249 -2.4481 -1.1866 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5739 0.8526 26 1 -0.3634 0.4513 -0.9232 27 1 3.0797 1.3443 -0.1082 28 1 1.5611 1.9274 -0.8308 29 1 2.9860 4.9181 0.7769 30 1 3.0797 -0.6611 -1.1757 31 1 1.5609 -0.3872 -2.0629 32 1 3.1954 -3.5672 -1.7357 33 1 2.4658 -2.4954 -2.9771 34 1 2.1417 -5.6900 -3.4679 35 1 -1.9917 -6.2524 -2.5678 36 1 -2.0356 -4.0962 -1.3959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090893103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:18 Heat of formation + Delta-G solvation = -63.987825 kcal Electronic energy + Delta-G solvation = -19421.358878 eV Core-core repulsion = 16205.731652 eV Total energy + Delta-G solvation = -3215.627227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.84084 -42.19736 -38.79499 -37.62175 -34.75317 -33.87599 -31.42392 -30.68969 -29.10164 -27.79339 -25.87310 -23.65927 -23.03254 -22.76467 -21.83348 -18.71880 -18.47450 -18.23861 -18.13266 -16.84305 -16.76040 -16.52454 -16.02133 -15.66236 -15.37417 -15.17654 -14.75205 -14.36971 -13.97637 -13.94941 -13.85558 -13.55657 -13.28165 -13.08253 -13.03556 -12.78195 -12.57421 -12.44323 -12.15766 -11.88397 -11.72706 -11.57646 -11.23212 -10.61117 -10.05631 -9.09081 -9.05175 -8.20741 -6.30660 0.09865 0.16103 1.41963 1.44993 1.52941 2.18790 2.40584 2.51176 3.00459 3.12041 3.24683 3.47297 3.68535 3.88624 3.98668 4.09330 4.10733 4.29441 4.44717 4.53164 4.58147 4.67946 4.73757 4.85284 4.88004 4.97290 5.07467 5.11725 5.17691 5.18772 5.26761 5.38398 5.61115 5.64993 6.03311 6.16299 6.28269 6.58676 6.84699 7.38931 8.90269 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.057057 B = 0.003432 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.615420 B = 8157.435059 C = 8487.577673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.546 5.546 3 C 0.206 3.794 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.058 3.942 13 C 0.092 3.908 14 H 0.097 0.903 15 C -0.096 4.096 16 C -0.152 4.152 17 C -0.104 4.104 18 C 0.052 3.948 19 F -0.144 7.144 20 C -0.112 4.112 21 C -0.118 4.118 22 C 0.076 3.924 23 O -0.309 6.309 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.002 0.998 27 H 0.012 0.988 28 H -0.039 1.039 29 H 0.265 0.735 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 -19.709 -7.013 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.270 5.270 3 C 0.080 3.920 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.194 1.194 12 C -0.070 4.070 13 C 0.036 3.964 14 H 0.114 0.886 15 C -0.133 4.133 16 C -0.153 4.153 17 C -0.122 4.122 18 C 0.033 3.967 19 F -0.122 7.122 20 C -0.131 4.131 21 C -0.137 4.137 22 C 0.031 3.969 23 O -0.224 6.224 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.030 0.970 28 H -0.021 1.021 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.173 0.827 35 H 0.184 0.816 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.058 -19.627 -6.571 21.091 hybrid contribution -0.208 1.086 -0.304 1.146 sum -4.266 -18.541 -6.875 20.229 Atomic orbital electron populations 1.22274 0.87534 1.01601 0.98895 1.62073 1.08341 1.15507 1.41113 1.19408 0.94002 0.83587 0.95007 1.21447 1.35001 0.97618 1.02412 0.91942 1.25904 0.94974 0.97993 1.00719 1.70069 1.39289 1.11921 1.36198 0.85438 0.78774 0.77197 0.79228 1.19190 1.20791 1.19388 1.22292 1.01014 0.91492 0.92251 1.23466 0.77621 0.95354 0.99909 0.88558 1.21848 0.98103 0.94246 0.99148 1.20728 0.96261 0.96717 1.01586 1.20380 0.98769 0.93009 1.00064 1.17540 0.95482 0.83721 0.99997 1.91482 1.97224 1.44075 1.79459 1.21076 0.98224 0.96212 0.97539 1.20342 0.97498 0.93195 1.02645 1.20107 0.95960 0.86472 0.94380 1.87013 1.27942 1.30817 1.76631 0.89605 0.92861 0.97923 0.97038 1.02128 0.92630 0.88341 0.95263 0.86161 0.88021 0.82672 0.81557 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.85 8.84 127.69 1.13 2.98 16 2 N -0.55 -23.75 4.75 -927.06 -4.41 -28.15 16 3 C 0.21 11.00 4.72 85.56 0.40 11.40 16 4 C -0.53 -30.03 8.46 25.60 0.22 -29.81 16 5 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.12 5.46 84.65 0.46 0.59 16 7 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 8 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.06 1.97 4.75 86.30 0.41 2.38 16 13 C 0.09 2.54 3.62 31.17 0.11 2.65 16 14 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 15 C -0.10 -1.96 6.65 30.73 0.20 -1.76 16 16 C -0.15 -3.33 6.27 -19.53 -0.12 -3.45 16 17 C -0.10 -1.98 10.02 22.23 0.22 -1.76 16 18 C 0.05 1.01 7.31 22.40 0.16 1.18 16 19 F -0.14 -2.90 17.27 44.97 0.78 -2.12 16 20 C -0.11 -1.97 10.00 22.25 0.22 -1.75 16 21 C -0.12 -2.42 10.06 22.44 0.23 -2.20 16 22 C 0.08 1.91 7.03 22.67 0.16 2.07 16 23 O -0.31 -9.20 7.97 -95.73 -0.76 -9.96 16 24 H 0.09 3.13 5.50 -2.39 -0.01 3.11 16 25 H 0.05 2.33 6.76 -2.38 -0.02 2.32 16 26 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.01 0.65 7.93 -2.39 -0.02 0.63 16 28 H -0.04 -2.28 8.12 -2.39 -0.02 -2.29 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.10 3.13 7.93 -2.39 -0.02 3.11 16 31 H 0.03 1.03 8.12 -2.38 -0.02 1.01 16 32 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.10 1.96 7.92 -2.39 -0.02 1.94 16 34 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -65.32 303.64 2.80 -62.52 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.08 Total: 4.79 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 3.81 Total: -17.48 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -4.12 Total: -84.04 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.76 Total: -9.96 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.32 2.80 -62.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090893103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.469 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds