Wall clock time and date at job start Mon Mar 30 2020 04:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 N 1.46503 * 109.47014 * 119.99981 * 2 1 3 5 5 C 1.46493 * 120.00118 * 307.21416 * 4 2 1 6 6 C 1.50699 * 109.47633 * 270.00447 * 5 4 2 7 7 H 1.07993 * 119.99700 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99886 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00209 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46892 * 90.00313 * 10 8 6 12 12 H 1.48498 * 109.47477 * 210.00496 * 10 8 6 13 13 H 1.48501 * 109.47122 * 330.00922 * 10 8 6 14 14 C 1.38972 * 119.99891 * 127.22061 * 4 2 1 15 15 C 1.39729 * 120.03269 * 9.01272 * 14 4 2 16 16 N 1.31901 * 120.09641 * 180.02562 * 15 14 4 17 17 C 1.32218 * 120.17181 * 0.02861 * 16 15 14 18 18 C 1.39246 * 120.05884 * 359.97135 * 17 16 15 19 19 C 1.48033 * 120.04473 * 180.02562 * 18 17 16 20 20 O 1.21432 * 119.99919 * 0.02562 * 19 18 17 21 21 O 1.34682 * 119.99515 * 180.27414 * 19 18 17 22 22 N 1.32299 * 120.03107 * 189.29590 * 14 4 2 23 23 H 1.09003 * 109.46903 * 300.00068 * 1 2 3 24 24 H 1.08994 * 109.47145 * 59.99842 * 1 2 3 25 25 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47349 * 240.00222 * 2 1 3 27 27 H 1.09006 * 109.47107 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47162 * 299.99823 * 3 2 1 29 29 H 1.08997 * 109.47153 * 60.00578 * 3 2 1 30 30 H 1.09007 * 109.47189 * 30.00496 * 5 4 2 31 31 H 1.09005 * 109.47091 * 149.99992 * 5 4 2 32 32 H 0.97001 * 119.99745 * 179.97438 * 9 8 6 33 33 H 1.08004 * 119.95596 * 0.02591 * 15 14 4 34 34 H 1.07996 * 119.96998 * 179.97438 * 17 16 15 35 35 H 0.96706 * 116.99434 * 179.72431 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5391 -0.2888 2.5209 6 6 2.4414 0.7818 3.0783 7 1 3.2875 1.1280 2.5034 8 6 2.1873 1.3186 4.3226 9 7 2.9751 2.2525 4.8091 10 14 0.7241 0.7193 5.3173 11 1 1.1398 -0.4237 6.1696 12 1 0.2250 1.8222 6.1773 13 1 -0.3555 0.2827 4.3959 14 6 2.9363 -1.7268 1.0742 15 6 3.5363 -1.9878 -0.1604 16 7 4.4073 -2.9713 -0.2778 17 6 4.7160 -3.7144 0.7714 18 6 4.1221 -3.4603 2.0050 19 6 4.4683 -4.2921 3.1796 20 8 5.2710 -5.1964 3.0678 21 8 3.8892 -4.0489 4.3710 22 7 3.2387 -2.4707 2.1256 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.5236 0.0988 2.4378 31 1 1.5450 -1.1519 3.1867 32 1 2.7961 2.6304 5.6844 33 1 3.2865 -1.3834 -1.0199 34 1 5.4293 -4.5191 0.6716 35 1 4.1439 -4.6212 5.1078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091420856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:31 Heat of formation + Delta-G solvation = -25.629527 kcal Electronic energy + Delta-G solvation = -20351.820244 eV Core-core repulsion = 17157.776320 eV Total energy + Delta-G solvation = -3194.043924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97869 -39.64256 -37.51210 -35.98638 -34.06357 -32.79288 -32.13040 -30.12358 -27.62258 -26.89988 -25.72282 -23.74417 -22.20424 -21.82313 -19.55204 -18.29186 -17.57552 -16.94233 -16.85366 -16.38511 -16.00841 -15.71397 -14.56506 -14.53640 -13.89565 -13.68293 -13.26271 -13.11187 -12.82242 -12.47109 -12.04326 -11.77095 -11.68798 -11.45628 -11.34580 -11.16968 -10.97479 -10.89706 -10.86451 -10.56202 -10.43317 -10.18511 -9.70973 -9.37625 -8.80420 -8.62717 -7.12120 -6.13787 -4.12360 0.59836 1.62282 2.58792 2.94807 3.23643 3.28180 3.32311 3.36738 4.10403 4.34609 4.51506 4.60220 4.71166 5.08009 5.18024 5.31352 5.38208 5.41932 5.53055 5.62882 5.84998 5.99825 6.08455 6.22929 6.34628 6.45198 6.47213 6.61829 6.87752 6.90980 7.28813 7.52553 7.64540 7.90405 7.94423 8.26413 8.45496 8.89913 9.46048 10.99060 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.008485 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.031442 B = 3299.222301 C = 4612.639121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 C -0.161 4.161 4 N -0.564 5.564 5 C 0.217 3.783 6 C -0.525 4.525 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.375 3.625 15 C 0.006 3.994 16 N -0.406 5.406 17 C 0.017 3.983 18 C 0.096 3.904 19 C 0.552 3.448 20 O -0.512 6.512 21 O -0.485 6.485 22 N -0.446 5.446 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 -7.996 -7.946 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 C -0.219 4.219 4 N -0.271 5.271 5 C 0.096 3.904 6 C -0.564 4.564 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.132 3.868 15 C -0.166 4.166 16 N -0.118 5.118 17 C -0.144 4.144 18 C -0.046 4.046 19 C 0.393 3.607 20 O -0.400 6.400 21 O -0.293 6.293 22 N -0.171 5.171 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.186 0.814 34 H 0.189 0.811 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.942 -7.715 -8.069 11.545 hybrid contribution -0.469 -0.443 1.334 1.482 sum -3.410 -8.158 -6.735 11.114 Atomic orbital electron populations 1.22174 0.94949 1.02061 1.02867 1.21087 0.94248 0.93912 0.86665 1.22215 1.01678 0.95244 1.02804 1.47004 1.41307 1.30212 1.08621 1.19798 0.95167 0.96629 0.78779 1.21317 1.12962 1.19492 1.02635 0.90601 1.24824 0.96253 0.94628 0.97100 1.69892 1.37927 1.27258 1.18357 0.86909 0.83373 0.78829 0.80916 1.19789 1.21230 1.19176 1.19355 0.89504 0.88394 0.89524 1.23472 0.96916 0.98616 0.97596 1.68321 1.10249 1.02971 1.30273 1.23088 1.02269 1.01435 0.87603 1.20680 0.96896 0.94759 0.92293 1.20440 0.76975 0.80629 0.82619 1.90873 1.33119 1.30690 1.85317 1.84793 1.65271 1.59796 1.19473 1.68079 1.14312 1.04368 1.30367 0.91169 0.91580 0.92700 0.90293 0.92514 0.92779 0.89705 0.94890 0.93859 0.92575 0.81385 0.81066 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.01 37.16 0.33 -1.79 16 2 C 0.14 2.14 3.11 -67.93 -0.21 1.93 16 3 C -0.16 -2.49 8.67 37.16 0.32 -2.17 16 4 N -0.56 -10.69 2.50 -167.46 -0.42 -11.10 16 5 C 0.22 4.87 3.94 -5.20 -0.02 4.85 16 6 C -0.53 -13.96 8.43 -34.44 -0.29 -14.25 16 7 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16 10 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 14 C 0.37 7.10 7.35 -154.91 -1.14 5.96 16 15 C 0.01 0.10 10.41 -16.97 -0.18 -0.07 16 16 N -0.41 -6.62 10.48 -12.53 -0.13 -6.75 16 17 C 0.02 0.27 10.76 -17.01 -0.18 0.09 16 18 C 0.10 1.72 6.75 -82.88 -0.56 1.16 16 19 C 0.55 9.13 8.33 34.75 0.29 9.42 16 20 O -0.51 -8.60 17.12 -19.21 -0.33 -8.93 16 21 O -0.48 -7.36 13.26 -40.44 -0.54 -7.90 16 22 N -0.45 -9.08 9.03 -8.82 -0.08 -9.16 16 23 H 0.07 1.04 6.48 -51.93 -0.34 0.70 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.96 5.51 -51.93 -0.29 0.67 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.58 6.94 -51.93 -0.36 1.22 16 30 H 0.03 0.72 5.14 -51.93 -0.27 0.46 16 31 H 0.04 1.05 6.70 -51.93 -0.35 0.70 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.17 2.18 5.95 -52.48 -0.31 1.87 16 34 H 0.17 2.38 7.63 -52.49 -0.40 1.98 16 35 H 0.41 3.77 9.11 45.56 0.42 4.18 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -32.35 298.95 -5.78 -38.13 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.16 Total: 3.87 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.73 Total: 7.08 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.14 Total: -52.81 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.87 Total: -16.83 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.35 -5.78 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091420856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.499 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds