Wall clock time and date at job start Mon Mar 30 2020 04:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 N 1.46503 * 109.47014 * 119.99981 * 2 1 3 5 5 C 1.46493 * 120.00118 * 307.21416 * 4 2 1 6 6 C 1.50699 * 109.47633 * 270.00447 * 5 4 2 7 7 H 1.07993 * 119.99700 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99886 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00209 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46892 * 90.00313 * 10 8 6 12 12 H 1.48498 * 109.47477 * 210.00496 * 10 8 6 13 13 H 1.48501 * 109.47122 * 330.00922 * 10 8 6 14 14 C 1.38972 * 119.99891 * 127.22061 * 4 2 1 15 15 C 1.39729 * 120.03269 * 9.01272 * 14 4 2 16 16 N 1.31901 * 120.09641 * 180.02562 * 15 14 4 17 17 C 1.32218 * 120.17181 * 0.02861 * 16 15 14 18 18 C 1.39246 * 120.05884 * 359.97135 * 17 16 15 19 19 C 1.48033 * 120.04473 * 180.02562 * 18 17 16 20 20 O 1.21432 * 119.99919 * 0.02562 * 19 18 17 21 21 O 1.34682 * 119.99515 * 180.27414 * 19 18 17 22 22 N 1.32299 * 120.03107 * 189.29590 * 14 4 2 23 23 H 1.09003 * 109.46903 * 300.00068 * 1 2 3 24 24 H 1.08994 * 109.47145 * 59.99842 * 1 2 3 25 25 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47349 * 240.00222 * 2 1 3 27 27 H 1.09006 * 109.47107 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47162 * 299.99823 * 3 2 1 29 29 H 1.08997 * 109.47153 * 60.00578 * 3 2 1 30 30 H 1.09007 * 109.47189 * 30.00496 * 5 4 2 31 31 H 1.09005 * 109.47091 * 149.99992 * 5 4 2 32 32 H 0.97001 * 119.99745 * 179.97438 * 9 8 6 33 33 H 1.08004 * 119.95596 * 0.02591 * 15 14 4 34 34 H 1.07996 * 119.96998 * 179.97438 * 17 16 15 35 35 H 0.96706 * 116.99434 * 179.72431 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5391 -0.2888 2.5209 6 6 2.4414 0.7818 3.0783 7 1 3.2875 1.1280 2.5034 8 6 2.1873 1.3186 4.3226 9 7 2.9751 2.2525 4.8091 10 14 0.7241 0.7193 5.3173 11 1 1.1398 -0.4237 6.1696 12 1 0.2250 1.8222 6.1773 13 1 -0.3555 0.2827 4.3959 14 6 2.9363 -1.7268 1.0742 15 6 3.5363 -1.9878 -0.1604 16 7 4.4073 -2.9713 -0.2778 17 6 4.7160 -3.7144 0.7714 18 6 4.1221 -3.4603 2.0050 19 6 4.4683 -4.2921 3.1796 20 8 5.2710 -5.1964 3.0678 21 8 3.8892 -4.0489 4.3710 22 7 3.2387 -2.4707 2.1256 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.5236 0.0988 2.4378 31 1 1.5450 -1.1519 3.1867 32 1 2.7961 2.6304 5.6844 33 1 3.2865 -1.3834 -1.0199 34 1 5.4293 -4.5191 0.6716 35 1 4.1439 -4.6212 5.1078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091420856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:31 Heat of formation + Delta-G solvation = -48.853888 kcal Electronic energy + Delta-G solvation = -20352.827328 eV Core-core repulsion = 17157.776320 eV Total energy + Delta-G solvation = -3195.051008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31085 -40.92215 -38.86658 -37.22983 -35.40526 -34.80995 -33.42123 -31.75729 -29.24522 -28.04567 -27.08048 -25.30643 -23.64959 -23.26557 -20.90358 -19.58371 -19.00681 -18.88067 -18.21199 -17.66659 -17.31643 -17.01547 -16.40465 -15.93246 -15.35643 -14.99276 -14.58407 -14.41333 -14.38090 -14.00756 -13.59010 -13.29981 -12.89272 -12.76403 -12.68996 -12.61902 -12.58349 -12.26179 -12.18258 -12.15888 -11.90511 -11.72034 -11.45475 -11.02027 -10.75237 -10.16789 -8.56378 -8.26924 -6.28895 -0.71557 0.25662 1.29578 1.35002 1.38882 1.45417 1.74658 1.99532 2.34681 2.76576 3.08076 3.25923 3.29103 3.40108 3.93835 4.06793 4.19131 4.26399 4.30212 4.49901 4.74541 4.86551 4.89555 4.93253 5.05108 5.10538 5.17072 5.32207 5.40252 5.51336 5.59529 5.86772 6.08371 6.40489 6.53826 6.72179 6.78819 6.98785 7.33490 8.89291 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.008485 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.031442 B = 3299.222301 C = 4612.639121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 C -0.154 4.154 4 N -0.574 5.574 5 C 0.232 3.768 6 C -0.513 4.513 7 H 0.033 0.967 8 C 0.014 3.986 9 N -0.947 5.947 10 Si 0.937 3.063 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.242 1.242 14 C 0.353 3.647 15 C 0.025 3.975 16 N -0.408 5.408 17 C 0.029 3.971 18 C 0.074 3.926 19 C 0.556 3.444 20 O -0.518 6.518 21 O -0.494 6.494 22 N -0.484 5.484 23 H 0.047 0.953 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.036 0.964 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.203 0.797 34 H 0.195 0.805 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -9.262 -9.681 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 C -0.213 4.213 4 N -0.283 5.283 5 C 0.109 3.891 6 C -0.552 4.552 7 H 0.051 0.949 8 C -0.184 4.184 9 N -0.588 5.588 10 Si 0.761 3.239 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.165 1.165 14 C 0.111 3.889 15 C -0.147 4.147 16 N -0.121 5.121 17 C -0.131 4.131 18 C -0.067 4.067 19 C 0.398 3.602 20 O -0.407 6.407 21 O -0.306 6.306 22 N -0.210 5.210 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.132 0.868 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.220 0.780 34 H 0.211 0.789 35 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -4.198 -9.030 -9.823 13.988 hybrid contribution 0.043 -0.066 1.791 1.793 sum -4.155 -9.096 -8.031 12.826 Atomic orbital electron populations 1.22144 0.93329 1.02613 1.03393 1.21440 0.95572 0.93097 0.86272 1.22138 1.00334 0.96149 1.02645 1.46995 1.41989 1.30987 1.08346 1.19351 0.94678 0.94375 0.80666 1.21508 1.11937 1.19767 1.02034 0.94858 1.25697 0.99302 0.94861 0.98521 1.70050 1.40415 1.29338 1.19019 0.85877 0.80499 0.78051 0.79507 1.20025 1.20948 1.16486 1.19716 0.90103 0.88648 0.90446 1.23928 0.95304 0.98026 0.97423 1.68452 1.10367 1.03154 1.30096 1.23462 1.01448 1.01228 0.86926 1.20974 0.97228 0.94904 0.93568 1.20261 0.76838 0.80312 0.82777 1.90862 1.33444 1.30913 1.85525 1.84743 1.65220 1.60666 1.20005 1.67978 1.15608 1.05576 1.31838 0.93400 0.88252 0.92090 0.86787 0.94491 0.88961 0.93704 0.93680 0.95358 0.92666 0.78013 0.78862 0.70553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.01 71.98 0.65 -2.98 16 2 C 0.14 3.76 3.11 44.99 0.14 3.90 16 3 C -0.15 -4.62 8.67 71.98 0.62 -3.99 16 4 N -0.57 -21.23 2.50 -683.73 -1.71 -22.94 16 5 C 0.23 10.40 3.94 85.63 0.34 10.74 16 6 C -0.51 -28.11 8.43 25.60 0.22 -27.90 16 7 H 0.03 2.06 7.83 -2.91 -0.02 2.04 16 8 C 0.01 0.78 5.47 84.65 0.46 1.24 16 9 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 10 Si 0.94 43.11 27.47 68.60 1.88 44.99 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 14 C 0.35 13.00 7.35 133.25 0.98 13.98 16 15 C 0.03 0.75 10.41 85.04 0.89 1.64 16 16 N -0.41 -12.31 10.48 -193.54 -2.03 -14.34 16 17 C 0.03 0.89 10.76 84.88 0.91 1.80 16 18 C 0.07 2.59 6.75 41.78 0.28 2.87 16 19 C 0.56 18.00 8.33 70.42 0.59 18.59 16 20 O -0.52 -16.80 17.12 20.06 0.34 -16.46 16 21 O -0.49 -14.72 13.26 -55.91 -0.74 -15.46 16 22 N -0.48 -19.56 9.03 -181.83 -1.64 -21.21 16 23 H 0.05 1.32 6.48 -2.39 -0.02 1.31 16 24 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.11 2.29 5.51 -2.39 -0.01 2.28 16 27 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.69 6.94 -2.39 -0.02 1.67 16 30 H 0.05 1.93 5.14 -2.38 -0.01 1.91 16 31 H 0.03 1.37 6.70 -2.38 -0.02 1.35 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.20 4.42 5.95 -2.91 -0.02 4.41 16 34 H 0.19 4.93 7.63 -2.91 -0.02 4.91 16 35 H 0.43 7.53 9.11 -74.05 -0.67 6.86 16 Total: -1.00 -72.46 298.95 2.89 -69.58 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.41 Total: 13.93 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 6.08 Total: 19.88 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -5.08 Total: -116.46 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.40 Total: -31.93 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Total: -72.46 2.89 -69.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091420856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.724 kcal (2) G-P(sol) polarization free energy of solvation -72.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds