Wall clock time and date at job start Mon Mar 30 2020 05:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48497 * 109.47158 * 270.00159 * 3 2 1 5 5 H 1.48508 * 109.46769 * 30.00236 * 3 2 1 6 6 H 1.48497 * 109.46935 * 149.99816 * 3 2 1 7 7 C 1.37874 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00551 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99773 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47080 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47474 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00232 * 180.02562 * 11 10 9 13 13 O 1.21593 * 120.00343 * 359.97438 * 12 11 10 14 14 C 1.47527 * 119.99610 * 180.02562 * 12 11 10 15 15 C 1.36597 * 125.76547 * 179.97438 * 14 12 11 16 16 N 1.34820 * 106.83727 * 179.71308 * 15 14 12 17 17 C 1.46495 * 126.59519 * 180.24451 * 16 15 14 18 18 C 1.53938 * 113.73277 * 11.72953 * 17 16 15 19 19 N 1.47959 * 86.18137 * 221.92198 * 18 17 16 20 20 C 1.47952 * 90.76421 * 24.68926 * 19 18 17 21 21 N 1.40214 * 106.80954 * 0.26969 * 16 15 14 22 22 N 1.28759 * 108.36470 * 359.97438 * 21 16 15 23 23 H 0.97000 * 120.00454 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47231 * 59.99911 * 9 7 2 25 25 H 1.08997 * 109.46578 * 299.99367 * 9 7 2 26 26 H 1.09006 * 109.47166 * 59.99962 * 10 9 7 27 27 H 1.08996 * 109.47201 * 300.00240 * 10 9 7 28 28 H 0.97003 * 119.99564 * 0.02562 * 11 10 9 29 29 H 1.08002 * 126.58530 * 359.97438 * 15 14 12 30 30 H 1.08994 * 112.93862 * 143.43700 * 17 16 15 31 31 H 1.08997 * 113.75844 * 336.23770 * 18 17 16 32 32 H 1.09000 * 113.75623 * 107.60788 * 18 17 16 33 33 H 1.00904 * 110.99829 * 271.79661 * 19 18 17 34 34 H 1.09001 * 113.76534 * 220.99526 * 20 19 18 35 35 H 1.09004 * 113.76049 * 89.62876 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4866 -2.6366 -0.0001 12 6 6.1604 -3.8037 -0.0008 13 8 5.5525 -4.8568 -0.0008 14 6 7.6357 -3.8036 -0.0002 15 6 8.4341 -4.9120 -0.0003 16 7 9.7094 -4.4746 -0.0062 17 6 10.9170 -5.3038 -0.0135 18 6 10.6453 -6.7915 -0.3007 19 7 11.6286 -7.0754 0.7679 20 6 11.3654 -5.7578 1.3874 21 7 9.6575 -3.0734 -0.0033 22 7 8.4213 -2.7132 0.0032 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8751 -0.6797 -0.8895 26 1 3.6586 -3.1502 -0.8904 27 1 3.6579 -3.1505 0.8896 28 1 5.9716 -1.7965 0.0003 29 1 8.1067 -5.9412 -0.0003 30 1 11.7205 -4.8787 -0.6149 31 1 9.6305 -7.1072 -0.0588 32 1 10.9677 -7.1136 -1.2909 33 1 12.5652 -7.1191 0.3951 34 1 12.2629 -5.2539 1.7460 35 1 10.5611 -5.7712 2.1230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092702395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:38 Heat of formation + Delta-G solvation = 98.146903 kcal Electronic energy + Delta-G solvation = -18974.880664 eV Core-core repulsion = 15818.496839 eV Total energy + Delta-G solvation = -3156.383824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.51158 -40.19707 -38.93566 -35.00890 -33.83339 -32.73012 -31.22677 -29.97090 -27.57270 -26.98820 -25.29651 -23.32686 -23.05093 -20.86066 -20.71588 -20.37971 -18.37987 -17.46812 -16.85962 -16.42841 -16.21513 -15.46194 -14.94159 -14.84084 -14.39406 -14.12386 -13.89471 -13.55132 -13.39924 -13.13185 -12.91187 -12.56281 -12.39074 -12.07526 -11.46274 -11.39735 -11.17613 -10.64160 -10.36164 -10.31963 -9.92840 -9.71402 -9.59559 -9.37968 -9.28465 -8.60552 -8.49873 -6.07256 -4.07234 0.91234 1.68636 1.69185 2.94204 3.26895 3.30587 3.38181 3.41043 3.47439 3.54468 3.87724 4.07618 4.23029 4.42678 4.54184 4.63017 4.74198 4.83551 4.92096 5.00944 5.09726 5.18682 5.26149 5.66365 6.06840 6.14526 6.23417 6.37677 6.59688 6.74009 7.17442 7.28241 7.69506 7.70410 7.97487 8.44845 8.51768 8.96836 9.53241 11.05670 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.048487 B = 0.003244 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.338690 B = 8629.163565 C = 9071.199976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.024 4.024 10 C 0.130 3.870 11 N -0.708 5.708 12 C 0.595 3.405 13 O -0.545 6.545 14 C -0.091 4.091 15 C 0.090 3.910 16 N -0.357 5.357 17 C 0.079 3.921 18 C 0.016 3.984 19 N -0.645 5.645 20 C 0.018 3.982 21 N -0.069 5.069 22 N -0.202 5.202 23 H 0.264 0.736 24 H 0.024 0.976 25 H 0.019 0.981 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.404 0.596 29 H 0.204 0.796 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.346 0.654 34 H 0.093 0.907 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.415 -12.116 -0.256 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.061 4.061 10 C 0.008 3.992 11 N -0.356 5.356 12 C 0.378 3.622 13 O -0.423 6.423 14 C -0.230 4.230 15 C -0.066 4.066 16 N -0.143 5.143 17 C -0.025 4.025 18 C -0.115 4.115 19 N -0.273 5.273 20 C -0.113 4.113 21 N -0.049 5.049 22 N -0.076 5.076 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.239 0.761 29 H 0.220 0.780 30 H 0.150 0.850 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.162 0.838 34 H 0.111 0.889 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 26.299 -12.063 0.258 28.935 hybrid contribution 0.617 1.169 -0.699 1.495 sum 26.916 -10.895 -0.441 29.040 Atomic orbital electron populations 1.69902 1.06290 1.27040 1.50537 1.24989 0.94758 0.99158 0.94350 0.86766 0.80375 0.83500 0.78578 1.20203 1.21312 1.18905 1.20911 0.88593 0.94898 1.51614 0.90566 1.19812 0.97959 0.91275 0.97088 1.21593 0.75338 1.00409 1.01861 1.46158 1.09250 1.07886 1.72344 1.16774 0.83498 0.84729 0.77248 1.90795 1.68482 1.31214 1.51761 1.21709 0.96346 0.88864 1.16104 1.23264 0.83298 1.01749 0.98265 1.50551 1.06125 1.07591 1.50067 1.25560 0.86059 0.90180 1.00673 1.24276 1.00563 0.89259 0.97389 1.65132 1.08915 1.32526 1.20706 1.24242 1.03125 0.88810 0.95132 1.81983 1.12765 0.87420 1.22700 1.74660 0.97478 1.25725 1.09725 0.92579 0.95823 0.96264 0.91625 0.91583 0.76102 0.77970 0.84995 0.86844 0.88597 0.83799 0.88905 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.10 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.55 4.16 -27.88 -0.12 -0.67 16 10 C 0.13 2.70 5.61 -4.04 -0.02 2.68 16 11 N -0.71 -12.70 5.55 -61.35 -0.34 -13.04 16 12 C 0.59 10.29 7.82 -12.48 -0.10 10.20 16 13 O -0.55 -10.68 16.86 5.28 0.09 -10.59 16 14 C -0.09 -1.31 6.99 -83.55 -0.58 -1.89 16 15 C 0.09 0.96 10.49 -16.83 -0.18 0.78 16 16 N -0.36 -3.36 3.83 -55.70 -0.21 -3.57 16 17 C 0.08 0.41 5.23 -69.62 -0.36 0.04 16 18 C 0.02 0.06 8.27 -2.77 -0.02 0.04 16 19 N -0.65 -2.67 8.55 -117.16 -1.00 -3.67 16 20 C 0.02 0.08 8.70 -2.77 -0.02 0.06 16 21 N -0.07 -0.90 13.78 60.35 0.83 -0.06 16 22 N -0.20 -2.99 12.04 32.85 0.40 -2.60 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 25 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 26 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.40 6.71 8.16 -40.82 -0.33 6.38 16 29 H 0.20 1.57 6.76 -52.49 -0.36 1.21 16 30 H 0.13 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.47 6.37 -51.93 -0.33 0.14 16 32 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.35 0.70 8.89 -39.29 -0.35 0.35 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -34.48 305.31 -5.63 -40.11 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.26 Total: 0.80 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.84 Total: -1.95 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.44 Total: -49.78 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.48 -5.63 -40.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092702395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.261 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds