Wall clock time and date at job start Mon Mar 30 2020 05:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48497 * 109.47158 * 270.00159 * 3 2 1 5 5 H 1.48508 * 109.46769 * 30.00236 * 3 2 1 6 6 H 1.48497 * 109.46935 * 149.99816 * 3 2 1 7 7 C 1.37874 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00551 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99773 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47080 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47474 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00232 * 180.02562 * 11 10 9 13 13 O 1.21593 * 120.00343 * 359.97438 * 12 11 10 14 14 C 1.47527 * 119.99610 * 180.02562 * 12 11 10 15 15 C 1.36597 * 125.76547 * 179.97438 * 14 12 11 16 16 N 1.34820 * 106.83727 * 179.71308 * 15 14 12 17 17 C 1.46495 * 126.59519 * 180.24451 * 16 15 14 18 18 C 1.53938 * 113.73277 * 11.72953 * 17 16 15 19 19 N 1.47959 * 86.18137 * 221.92198 * 18 17 16 20 20 C 1.47952 * 90.76421 * 24.68926 * 19 18 17 21 21 N 1.40214 * 106.80954 * 0.26969 * 16 15 14 22 22 N 1.28759 * 108.36470 * 359.97438 * 21 16 15 23 23 H 0.97000 * 120.00454 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47231 * 59.99911 * 9 7 2 25 25 H 1.08997 * 109.46578 * 299.99367 * 9 7 2 26 26 H 1.09006 * 109.47166 * 59.99962 * 10 9 7 27 27 H 1.08996 * 109.47201 * 300.00240 * 10 9 7 28 28 H 0.97003 * 119.99564 * 0.02562 * 11 10 9 29 29 H 1.08002 * 126.58530 * 359.97438 * 15 14 12 30 30 H 1.08994 * 112.93862 * 143.43700 * 17 16 15 31 31 H 1.08997 * 113.75844 * 336.23770 * 18 17 16 32 32 H 1.09000 * 113.75623 * 107.60788 * 18 17 16 33 33 H 1.00904 * 110.99829 * 271.79661 * 19 18 17 34 34 H 1.09001 * 113.76534 * 220.99526 * 20 19 18 35 35 H 1.09004 * 113.76049 * 89.62876 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4866 -2.6366 -0.0001 12 6 6.1604 -3.8037 -0.0008 13 8 5.5525 -4.8568 -0.0008 14 6 7.6357 -3.8036 -0.0002 15 6 8.4341 -4.9120 -0.0003 16 7 9.7094 -4.4746 -0.0062 17 6 10.9170 -5.3038 -0.0135 18 6 10.6453 -6.7915 -0.3007 19 7 11.6286 -7.0754 0.7679 20 6 11.3654 -5.7578 1.3874 21 7 9.6575 -3.0734 -0.0033 22 7 8.4213 -2.7132 0.0032 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8751 -0.6797 -0.8895 26 1 3.6586 -3.1502 -0.8904 27 1 3.6579 -3.1505 0.8896 28 1 5.9716 -1.7965 0.0003 29 1 8.1067 -5.9412 -0.0003 30 1 11.7205 -4.8787 -0.6149 31 1 9.6305 -7.1072 -0.0588 32 1 10.9677 -7.1136 -1.2909 33 1 12.5652 -7.1191 0.3951 34 1 12.2629 -5.2539 1.7460 35 1 10.5611 -5.7712 2.1230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092702395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:37 Heat of formation + Delta-G solvation = 68.097869 kcal Electronic energy + Delta-G solvation = -18976.183687 eV Core-core repulsion = 15818.496839 eV Total energy + Delta-G solvation = -3157.686848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.39700 -40.75521 -40.22218 -36.67668 -34.90781 -34.50186 -32.49642 -31.57741 -28.22650 -27.33967 -26.94681 -24.50901 -23.92380 -22.60710 -21.60884 -21.33232 -19.39965 -18.95202 -17.79014 -17.44303 -17.13720 -16.86244 -16.28487 -16.22265 -15.78554 -15.13294 -15.00919 -14.70551 -14.54983 -14.20917 -13.85659 -13.38124 -13.35612 -13.25696 -13.04960 -12.60079 -12.29201 -12.17363 -12.15843 -11.76838 -11.52189 -11.36504 -11.20465 -10.77928 -10.49463 -10.03966 -9.82623 -8.29292 -6.35740 0.05418 0.56603 0.97090 1.39944 1.41588 1.53314 2.15066 2.20232 2.37387 2.62404 2.91263 3.05823 3.12698 3.52334 3.66249 3.78246 3.92820 4.21874 4.31082 4.43085 4.44311 4.44941 4.58665 4.67827 4.71025 4.76667 4.81822 5.12265 5.36637 5.39246 5.41049 5.63175 6.19198 6.22861 6.44297 6.71255 6.86195 7.12195 7.28816 8.87179 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.048487 B = 0.003244 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.338690 B = 8629.163565 C = 9071.199976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.535 4.535 8 H 0.035 0.965 9 C -0.016 4.016 10 C 0.145 3.855 11 N -0.706 5.706 12 C 0.598 3.402 13 O -0.573 6.573 14 C -0.118 4.118 15 C 0.112 3.888 16 N -0.339 5.339 17 C 0.070 3.930 18 C 0.021 3.979 19 N -0.653 5.653 20 C 0.020 3.980 21 N -0.084 5.084 22 N -0.224 5.224 23 H 0.268 0.732 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.413 0.587 29 H 0.232 0.768 30 H 0.152 0.848 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.360 0.640 34 H 0.107 0.893 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.733 -12.148 -0.487 32.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.053 0.947 9 C -0.053 4.053 10 C 0.022 3.978 11 N -0.356 5.356 12 C 0.384 3.616 13 O -0.452 6.452 14 C -0.258 4.258 15 C -0.045 4.045 16 N -0.124 5.124 17 C -0.032 4.032 18 C -0.110 4.110 19 N -0.282 5.282 20 C -0.111 4.111 21 N -0.064 5.064 22 N -0.098 5.098 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.249 0.751 29 H 0.248 0.752 30 H 0.170 0.830 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.177 0.823 34 H 0.125 0.875 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 29.692 -12.108 0.027 32.066 hybrid contribution -0.345 0.991 -0.616 1.217 sum 29.348 -11.117 -0.589 31.388 Atomic orbital electron populations 1.70059 1.08383 1.28369 1.52050 1.25998 0.95648 1.03592 0.93786 0.85611 0.79606 0.77832 0.79312 1.19047 1.21064 1.16515 1.21225 0.91267 0.93554 1.51338 0.94669 1.19671 0.94693 0.93044 0.97923 1.21149 0.77309 0.98579 1.00783 1.45949 1.07856 1.08833 1.72926 1.17066 0.84790 0.83824 0.75968 1.90773 1.69520 1.31972 1.52945 1.21359 0.94800 0.90341 1.19307 1.23615 0.83185 1.02014 0.95732 1.50869 1.07020 1.06738 1.47805 1.26177 0.85016 0.90319 1.01694 1.24345 1.00515 0.87697 0.98421 1.65111 1.09994 1.32011 1.21072 1.24198 1.03267 0.89179 0.94435 1.81891 1.11960 0.89389 1.23127 1.74626 0.98097 1.26454 1.10611 0.92313 0.94810 0.94914 0.92788 0.92823 0.75129 0.75190 0.83003 0.87168 0.86431 0.82285 0.87472 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.01 0.41 5.47 84.65 0.46 0.88 16 3 Si 0.95 43.73 27.47 68.60 1.88 45.62 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 7 C -0.54 -30.99 9.66 25.60 0.25 -30.74 16 8 H 0.03 2.25 7.99 -2.91 -0.02 2.23 16 9 C -0.02 -0.72 4.16 29.85 0.12 -0.60 16 10 C 0.15 6.10 5.61 86.38 0.48 6.59 16 11 N -0.71 -25.05 5.55 -466.28 -2.59 -27.64 16 12 C 0.60 20.48 7.82 86.69 0.68 21.16 16 13 O -0.57 -22.40 16.86 -4.01 -0.07 -22.47 16 14 C -0.12 -3.27 6.99 40.82 0.29 -2.98 16 15 C 0.11 2.15 10.49 83.85 0.88 3.03 16 16 N -0.34 -5.56 3.83 -330.14 -1.27 -6.83 16 17 C 0.07 0.50 5.23 46.56 0.24 0.75 16 18 C 0.02 0.09 8.27 86.41 0.71 0.80 16 19 N -0.65 -3.47 8.55 -524.58 -4.49 -7.96 16 20 C 0.02 0.13 8.70 86.41 0.75 0.88 16 21 N -0.08 -2.03 13.78 37.02 0.51 -1.52 16 22 N -0.22 -6.39 12.04 -49.99 -0.60 -6.99 16 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 25 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 26 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 27 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.41 13.28 8.16 -92.71 -0.76 12.53 16 29 H 0.23 2.95 6.76 -2.91 -0.02 2.93 16 30 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.57 6.37 -2.39 -0.02 0.56 16 32 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.36 0.30 8.89 -89.69 -0.80 -0.50 16 34 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.01 305.31 -1.91 -77.93 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -0.47 Total: 9.45 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.87 Total: -0.23 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -8.13 Total: -110.29 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.07 Total: -22.47 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.62 kcal Total: -76.01 -1.91 -77.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092702395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.025 kcal (2) G-P(sol) polarization free energy of solvation -76.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds