Wall clock time and date at job start Mon Mar 30 2020 04:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39674 * 119.99796 * 2 1 4 4 C 1.38994 * 120.03390 * 0.25248 * 3 2 1 5 5 C 1.38140 * 120.07092 * 180.27944 * 4 3 2 6 6 C 1.38177 * 120.14527 * 359.74400 * 5 4 3 7 7 C 1.38950 * 120.07429 * 359.97438 * 6 5 4 8 8 N 1.39673 * 120.03742 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99500 * 63.97474 * 8 7 6 10 10 C 1.46892 * 110.99710 * 300.02378 * 8 7 6 11 11 C 1.50706 * 109.46891 * 189.99625 * 10 8 7 12 12 H 1.07992 * 119.99908 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00233 * 179.97438 * 11 10 8 14 14 N 1.31524 * 119.99909 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00325 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46907 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47383 * 119.99998 * 15 13 11 18 18 H 1.48504 * 109.46927 * 240.00338 * 15 13 11 19 19 C 1.38748 * 120.03725 * 180.02562 * 3 2 1 20 20 N 1.48026 * 120.07492 * 0.02562 * 19 3 2 21 21 O 1.21799 * 119.99788 * 269.72415 * 20 19 3 22 22 O 1.21796 * 119.99954 * 89.72207 * 20 19 3 23 23 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47475 * 299.99579 * 1 2 3 25 25 H 1.09001 * 109.47510 * 60.00599 * 1 2 3 26 26 H 0.96998 * 120.00366 * 179.97438 * 2 1 3 27 27 H 1.08005 * 119.96887 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.92425 * 179.72722 * 5 4 3 29 29 H 1.08003 * 119.96035 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47257 * 60.00263 * 9 8 7 31 31 H 1.08996 * 109.46403 * 180.02562 * 9 8 7 32 32 H 1.08994 * 109.47056 * 299.99968 * 9 8 7 33 33 H 1.09006 * 109.47509 * 309.99714 * 10 8 7 34 34 H 1.08999 * 109.47422 * 70.00070 * 10 8 7 35 35 H 0.97002 * 119.99840 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4690 2.4137 0.0053 5 6 2.1589 3.6106 -0.0005 6 6 3.5406 3.6150 -0.0063 7 6 4.2408 2.4148 -0.0057 8 7 5.6375 2.4202 -0.0121 9 6 6.1671 3.0279 1.2160 10 6 6.1558 3.1047 -1.2040 11 6 7.6426 2.8804 -1.3054 12 1 8.1514 2.2882 -0.5593 13 6 8.3531 3.4303 -2.3512 14 7 7.7333 4.1511 -3.2602 15 14 10.1958 3.1517 -2.4773 16 1 10.6486 2.3129 -1.3385 17 1 10.5059 2.4615 -3.7551 18 1 10.8980 4.4596 -2.4380 19 6 3.5508 1.2106 -0.0005 20 7 4.2935 -0.0699 -0.0017 21 8 4.6038 -0.5948 1.0527 22 8 4.5942 -0.5985 -1.0569 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.9500 -0.8400 0.0004 27 1 0.3890 2.4138 0.0090 28 1 1.6170 4.5448 -0.0008 29 1 4.0769 4.5525 -0.0104 30 1 5.8238 2.4592 2.0801 31 1 7.2566 3.0197 1.1847 32 1 5.8140 4.0561 1.2942 33 1 5.6668 2.7066 -2.0932 34 1 5.9541 4.1731 -1.1260 35 1 8.2332 4.5383 -3.9958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127271994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:05 Heat of formation + Delta-G solvation = 39.095492 kcal Electronic energy + Delta-G solvation = -20386.297646 eV Core-core repulsion = 17195.060409 eV Total energy + Delta-G solvation = -3191.237237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66133 -39.66535 -37.34445 -35.85698 -34.90657 -32.65033 -31.42857 -29.28034 -27.35874 -26.52613 -26.02885 -24.74351 -22.47697 -21.98985 -20.21076 -18.87140 -18.18128 -17.77302 -16.83252 -16.28974 -15.77496 -15.10147 -14.86556 -14.71550 -14.52929 -14.38688 -13.77361 -13.06171 -12.72749 -12.55698 -12.20024 -12.13341 -11.85496 -11.38505 -11.06277 -11.03585 -10.77389 -10.68246 -10.53791 -10.52243 -10.34805 -10.05316 -9.39075 -8.98013 -8.53325 -7.78376 -7.76725 -6.10475 -4.12785 1.01515 1.15155 1.34829 2.00175 3.00895 3.29699 3.37353 3.42975 3.54382 4.25890 4.46655 4.81655 4.83701 4.96937 5.13044 5.21454 5.25871 5.32255 5.36894 5.38742 5.82729 5.93352 5.99544 6.25868 6.37182 6.41845 6.56075 6.74433 6.95017 7.04854 7.11207 7.21583 7.66332 7.78284 7.98216 8.20532 8.34561 8.92892 9.51776 11.00476 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.005793 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.703459 B = 4832.650280 C = 5266.303381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.751 5.751 3 C 0.260 3.740 4 C -0.205 4.205 5 C -0.031 4.031 6 C -0.196 4.196 7 C 0.208 3.792 8 N -0.527 5.527 9 C 0.043 3.957 10 C 0.201 3.799 11 C -0.512 4.512 12 H 0.066 0.934 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.902 3.098 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.284 1.284 19 C -0.092 4.092 20 N 0.044 4.956 21 O -0.159 6.159 22 O -0.140 6.140 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.401 0.599 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.003 0.997 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.468 -2.630 7.533 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.380 5.380 3 C 0.153 3.847 4 C -0.228 4.228 5 C -0.050 4.050 6 C -0.219 4.219 7 C 0.112 3.888 8 N -0.249 5.249 9 C -0.103 4.103 10 C 0.079 3.921 11 C -0.550 4.550 12 H 0.085 0.915 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.730 3.270 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.210 1.210 19 C -0.179 4.179 20 N 0.574 4.426 21 O -0.379 6.379 22 O -0.365 6.365 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.235 0.765 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.848 -2.328 7.371 17.633 hybrid contribution 1.086 0.104 -0.295 1.130 sum -14.762 -2.224 7.076 16.521 Atomic orbital electron populations 1.21610 0.78884 1.02967 1.01552 1.44537 1.06675 1.04893 1.81876 1.17176 0.87027 0.87996 0.92474 1.20498 0.99851 0.89693 1.12807 1.21042 0.93831 0.97640 0.92526 1.21594 0.94578 0.98175 1.07546 1.18539 0.91883 0.89173 0.89222 1.60022 1.00266 1.58300 1.06356 1.22293 1.02392 0.95876 0.89770 1.19887 0.96104 0.91468 0.84673 1.21098 0.91534 1.32147 1.10224 0.91537 1.24968 0.99077 0.94959 0.95317 1.69968 1.36091 1.34165 1.13299 0.86367 0.84536 0.77849 0.78287 1.19501 1.20799 1.21030 1.20355 0.89483 0.83718 1.24304 1.43105 0.98400 1.01228 0.99906 1.94473 1.56801 1.65417 1.21228 1.94545 1.56334 1.64792 1.20846 0.90384 0.92380 0.92296 0.76502 0.84527 0.84784 0.84353 0.92947 0.89336 0.95644 0.94807 0.97897 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 9.94 59.85 0.59 1.33 16 2 N -0.75 -9.25 5.88 -65.42 -0.38 -9.63 16 3 C 0.26 3.89 6.65 -83.82 -0.56 3.33 16 4 C -0.21 -2.54 9.31 -39.34 -0.37 -2.91 16 5 C -0.03 -0.40 10.03 -39.64 -0.40 -0.79 16 6 C -0.20 -3.24 8.65 -39.34 -0.34 -3.58 16 7 C 0.21 4.12 4.67 -83.82 -0.39 3.73 16 8 N -0.53 -11.94 4.44 -180.36 -0.80 -12.74 16 9 C 0.04 0.85 9.20 60.07 0.55 1.40 16 10 C 0.20 5.29 4.30 -4.98 -0.02 5.27 16 11 C -0.51 -14.52 8.46 -34.44 -0.29 -14.81 16 12 H 0.07 1.89 7.12 -52.49 -0.37 1.52 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.09 -1.73 6.19 -79.55 -0.49 -2.22 16 20 N 0.04 0.90 3.18 34.16 0.11 1.01 16 21 O -0.16 -3.26 19.25 -29.46 -0.57 -3.83 16 22 O -0.14 -3.09 19.25 -29.46 -0.57 -3.66 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.39 7.94 -51.93 -0.41 -0.02 16 25 H 0.06 0.42 7.96 -51.93 -0.41 0.01 16 26 H 0.40 5.18 8.08 -40.82 -0.33 4.85 16 27 H 0.14 1.23 6.72 -52.48 -0.35 0.88 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.14 2.26 7.12 -52.48 -0.37 1.88 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.83 6.76 -51.93 -0.35 1.48 16 32 H 0.03 0.46 7.34 -51.93 -0.38 0.07 16 33 H 0.03 0.98 8.06 -51.93 -0.42 0.57 16 34 H 0.00 0.09 7.47 -51.93 -0.39 -0.30 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -32.54 306.23 -7.89 -40.42 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.20 Total: 0.46 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.81 Total: -7.68 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.34 Total: -47.16 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -1.13 Total: -7.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.54 -7.89 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127271994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.519 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds