Wall clock time and date at job start Mon Mar 30 2020 04:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39674 * 119.99796 * 2 1 4 4 C 1.38994 * 120.03390 * 0.25248 * 3 2 1 5 5 C 1.38140 * 120.07092 * 180.27944 * 4 3 2 6 6 C 1.38177 * 120.14527 * 359.74400 * 5 4 3 7 7 C 1.38950 * 120.07429 * 359.97438 * 6 5 4 8 8 N 1.39673 * 120.03742 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99500 * 63.97474 * 8 7 6 10 10 C 1.46892 * 110.99710 * 300.02378 * 8 7 6 11 11 C 1.50706 * 109.46891 * 189.99625 * 10 8 7 12 12 H 1.07992 * 119.99908 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00233 * 179.97438 * 11 10 8 14 14 N 1.31524 * 119.99909 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00325 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46907 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47383 * 119.99998 * 15 13 11 18 18 H 1.48504 * 109.46927 * 240.00338 * 15 13 11 19 19 C 1.38748 * 120.03725 * 180.02562 * 3 2 1 20 20 N 1.48026 * 120.07492 * 0.02562 * 19 3 2 21 21 O 1.21799 * 119.99788 * 269.72415 * 20 19 3 22 22 O 1.21796 * 119.99954 * 89.72207 * 20 19 3 23 23 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47475 * 299.99579 * 1 2 3 25 25 H 1.09001 * 109.47510 * 60.00599 * 1 2 3 26 26 H 0.96998 * 120.00366 * 179.97438 * 2 1 3 27 27 H 1.08005 * 119.96887 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.92425 * 179.72722 * 5 4 3 29 29 H 1.08003 * 119.96035 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47257 * 60.00263 * 9 8 7 31 31 H 1.08996 * 109.46403 * 180.02562 * 9 8 7 32 32 H 1.08994 * 109.47056 * 299.99968 * 9 8 7 33 33 H 1.09006 * 109.47509 * 309.99714 * 10 8 7 34 34 H 1.08999 * 109.47422 * 70.00070 * 10 8 7 35 35 H 0.97002 * 119.99840 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4690 2.4137 0.0053 5 6 2.1589 3.6106 -0.0005 6 6 3.5406 3.6150 -0.0063 7 6 4.2408 2.4148 -0.0057 8 7 5.6375 2.4202 -0.0121 9 6 6.1671 3.0279 1.2160 10 6 6.1558 3.1047 -1.2040 11 6 7.6426 2.8804 -1.3054 12 1 8.1514 2.2882 -0.5593 13 6 8.3531 3.4303 -2.3512 14 7 7.7333 4.1511 -3.2602 15 14 10.1958 3.1517 -2.4773 16 1 10.6486 2.3129 -1.3385 17 1 10.5059 2.4615 -3.7551 18 1 10.8980 4.4596 -2.4380 19 6 3.5508 1.2106 -0.0005 20 7 4.2935 -0.0699 -0.0017 21 8 4.6038 -0.5948 1.0527 22 8 4.5942 -0.5985 -1.0569 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.9500 -0.8400 0.0004 27 1 0.3890 2.4138 0.0090 28 1 1.6170 4.5448 -0.0008 29 1 4.0769 4.5525 -0.0104 30 1 5.8238 2.4592 2.0801 31 1 7.2566 3.0197 1.1847 32 1 5.8140 4.0561 1.2942 33 1 5.6668 2.7066 -2.0932 34 1 5.9541 4.1731 -1.1260 35 1 8.2332 4.5383 -3.9958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127271994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:05 Heat of formation + Delta-G solvation = 17.175636 kcal Electronic energy + Delta-G solvation = -20387.248162 eV Core-core repulsion = 17195.060409 eV Total energy + Delta-G solvation = -3192.187753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.18603 -40.99291 -38.72192 -37.47739 -36.13898 -34.71007 -32.71544 -30.56786 -29.29528 -27.65809 -27.33829 -26.34265 -24.18938 -23.32200 -21.64578 -20.26203 -19.78541 -19.09327 -18.61034 -17.90738 -17.02532 -16.85771 -16.30285 -15.93478 -15.81993 -15.56642 -15.27976 -14.58200 -14.18310 -13.70441 -13.67958 -13.36768 -13.05878 -12.92489 -12.86787 -12.70783 -12.61654 -12.47612 -12.19916 -12.18681 -12.06568 -11.52151 -11.29687 -10.70771 -10.26001 -9.52604 -8.83574 -8.29148 -6.40204 -0.48615 -0.21903 0.15669 0.56603 1.37030 1.39271 1.52502 2.03078 2.34204 2.38585 2.88427 3.04433 3.69806 3.83026 3.99332 4.09580 4.15137 4.32205 4.41621 4.47950 4.60556 4.78894 4.84613 4.85525 4.89485 5.03884 5.14391 5.24827 5.30477 5.35120 5.56752 5.90135 5.93753 5.94364 6.15481 6.45299 6.55179 6.71505 7.29344 8.82297 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.005793 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.703459 B = 4832.650280 C = 5266.303381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.750 5.750 3 C 0.260 3.740 4 C -0.186 4.186 5 C -0.011 4.011 6 C -0.209 4.209 7 C 0.168 3.832 8 N -0.544 5.544 9 C 0.048 3.952 10 C 0.225 3.775 11 C -0.532 4.532 12 H 0.059 0.941 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.270 1.270 19 C -0.125 4.125 20 N 0.049 4.951 21 O -0.148 6.148 22 O -0.193 6.193 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.395 0.605 27 H 0.184 0.816 28 H 0.182 0.818 29 H 0.133 0.867 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.039 0.961 33 H -0.007 1.007 34 H -0.011 1.011 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -1.999 8.468 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.376 5.376 3 C 0.151 3.849 4 C -0.208 4.208 5 C -0.030 4.030 6 C -0.231 4.231 7 C 0.072 3.928 8 N -0.266 5.266 9 C -0.098 4.098 10 C 0.101 3.899 11 C -0.570 4.570 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.796 3.204 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.195 1.195 19 C -0.212 4.212 20 N 0.576 4.424 21 O -0.376 6.376 22 O -0.408 6.408 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.227 0.773 27 H 0.201 0.799 28 H 0.199 0.801 29 H 0.151 0.849 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.011 0.989 34 H 0.007 0.993 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.138 -1.726 8.231 19.993 hybrid contribution 1.576 -0.113 -0.481 1.651 sum -16.562 -1.839 7.751 18.378 Atomic orbital electron populations 1.21980 0.75819 1.05008 1.02979 1.44883 1.08541 1.03770 1.80429 1.17520 0.85671 0.90083 0.91580 1.21066 1.01877 0.88097 1.09807 1.21528 0.92112 0.99888 0.89462 1.21634 0.96475 0.96498 1.08527 1.18666 0.90440 0.90810 0.92875 1.59742 1.02963 1.58188 1.05724 1.22255 1.01251 0.96955 0.89361 1.19368 0.94910 0.90480 0.85110 1.21376 0.92863 1.32309 1.10454 0.92289 1.25866 1.03992 0.94415 0.94729 1.70073 1.38056 1.34844 1.13845 0.85302 0.78614 0.78283 0.78245 1.19125 1.20376 1.19540 1.20607 0.90939 0.81903 1.27752 1.43447 0.97871 1.01795 0.99294 1.94417 1.56046 1.65868 1.21228 1.94534 1.58577 1.66309 1.21331 0.88384 0.90449 0.91026 0.77257 0.79883 0.80110 0.84947 0.91233 0.91079 0.94233 0.98919 0.99286 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.94 127.77 1.27 2.23 16 2 N -0.75 -16.75 5.88 -360.88 -2.12 -18.87 16 3 C 0.26 7.27 6.65 38.20 0.25 7.52 16 4 C -0.19 -3.79 9.31 22.43 0.21 -3.58 16 5 C -0.01 -0.24 10.03 22.23 0.22 -0.01 16 6 C -0.21 -6.72 8.65 22.43 0.19 -6.53 16 7 C 0.17 6.78 4.67 38.20 0.18 6.96 16 8 N -0.54 -25.73 4.44 -724.52 -3.22 -28.94 16 9 C 0.05 1.94 9.20 127.69 1.17 3.11 16 10 C 0.23 12.50 4.30 85.56 0.37 12.87 16 11 C -0.53 -31.40 8.46 25.60 0.22 -31.18 16 12 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 13 C 0.01 0.52 5.46 84.65 0.46 0.98 16 14 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 15 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C -0.13 -4.76 6.19 36.63 0.23 -4.53 16 20 N 0.05 2.10 3.18 -45.85 -0.15 1.95 16 21 O -0.15 -6.19 19.25 18.89 0.36 -5.83 16 22 O -0.19 -9.05 19.25 18.89 0.36 -8.68 16 23 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.08 0.64 7.94 -2.39 -0.02 0.62 16 25 H 0.07 0.68 7.96 -2.39 -0.02 0.67 16 26 H 0.39 9.83 8.08 -92.71 -0.75 9.08 16 27 H 0.18 2.07 6.72 -2.91 -0.02 2.05 16 28 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.13 4.33 7.12 -2.91 -0.02 4.31 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 3.07 6.76 -2.39 -0.02 3.05 16 32 H 0.04 1.45 7.34 -2.39 -0.02 1.44 16 33 H -0.01 -0.46 8.06 -2.38 -0.02 -0.48 16 34 H -0.01 -0.60 7.47 -2.39 -0.02 -0.61 16 35 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -75.21 306.23 2.70 -72.51 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.37 Total: 8.52 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.78 Total: -12.16 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -5.20 Total: -101.89 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.73 Total: -14.51 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.21 2.70 -72.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127271994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.687 kcal (2) G-P(sol) polarization free energy of solvation -75.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds