Wall clock time and date at job start Mon Mar 30 2020 04:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47267 * 2 1 4 4 C 1.50699 * 109.47254 * 240.00377 * 2 1 3 5 5 H 1.08005 * 119.99938 * 243.88946 * 4 2 1 6 6 C 1.37873 * 120.00375 * 63.88098 * 4 2 1 7 7 N 1.31508 * 120.00752 * 195.65273 * 6 4 2 8 8 Si 1.86803 * 119.99652 * 15.66011 * 6 4 2 9 9 H 1.48494 * 109.47368 * 95.52423 * 8 6 4 10 10 H 1.48508 * 109.47240 * 215.52721 * 8 6 4 11 11 H 1.48500 * 109.47031 * 335.52211 * 8 6 4 12 12 N 1.46902 * 109.47598 * 120.00107 * 2 1 3 13 13 C 1.46894 * 110.99841 * 302.99225 * 12 2 1 14 14 C 1.39664 * 111.00294 * 179.03890 * 12 2 1 15 15 C 1.38996 * 120.03580 * 60.03327 * 14 12 2 16 16 C 1.38132 * 120.07115 * 179.74660 * 15 14 12 17 17 C 1.38180 * 120.15033 * 0.27348 * 16 15 14 18 18 C 1.38952 * 120.07175 * 359.97438 * 17 16 15 19 19 N 1.39668 * 120.03597 * 179.97438 * 18 17 16 20 20 C 1.38752 * 120.03947 * 240.29030 * 14 12 2 21 21 N 1.48033 * 120.07113 * 359.97438 * 20 14 12 22 22 O 1.21801 * 120.00095 * 270.25637 * 21 20 14 23 23 O 1.21802 * 119.99624 * 90.25669 * 21 20 14 24 24 H 1.08996 * 109.46690 * 304.89289 * 1 2 3 25 25 H 1.08992 * 109.47455 * 64.90187 * 1 2 3 26 26 H 1.08999 * 109.46613 * 184.89870 * 1 2 3 27 27 H 0.97001 * 120.00844 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47478 * 296.04981 * 13 12 2 29 29 H 1.09009 * 109.47381 * 56.04486 * 13 12 2 30 30 H 1.09006 * 109.47218 * 176.04060 * 13 12 2 31 31 H 1.08001 * 119.96431 * 0.02562 * 15 14 12 32 32 H 1.07996 * 119.92794 * 180.25179 * 16 15 14 33 33 H 1.08000 * 119.96467 * 180.02562 * 17 16 15 34 34 H 0.96997 * 120.00260 * 0.02562 * 19 18 17 35 35 H 0.97007 * 119.99966 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6005 -1.6236 -1.1327 6 6 1.7666 -0.1944 -2.4811 7 7 1.9239 -0.9452 -3.5493 8 14 1.1833 1.5713 -2.6584 9 1 2.3455 2.4503 -2.9443 10 1 0.2084 1.6609 -3.7751 11 1 0.5320 2.0065 -1.3968 12 7 2.0198 -0.6925 1.1994 13 6 1.4913 -0.0690 2.4199 14 6 3.4158 -0.7301 1.2207 15 6 4.1436 0.4540 1.2254 16 6 5.5242 0.4178 1.2518 17 6 6.1864 -0.7949 1.2680 18 6 5.4650 -1.9824 1.2583 19 7 6.1351 -3.2077 1.2741 20 6 4.0777 -1.9495 1.2320 21 7 3.3058 -3.2126 1.2219 22 8 2.9685 -3.7286 2.2724 23 8 3.0080 -3.7359 0.1631 24 1 -0.3632 0.5879 0.8429 25 1 -0.3634 0.4359 -0.9305 26 1 -0.3632 -1.0239 0.0878 27 1 1.7373 -0.5822 -4.4292 28 1 1.8671 0.9511 2.4989 29 1 0.4021 -0.0526 2.3773 30 1 1.8121 -0.6429 3.2894 31 1 3.6291 1.4035 1.2129 32 1 6.0874 1.3392 1.2594 33 1 7.2659 -0.8198 1.2890 34 1 7.1046 -3.2301 1.2922 35 1 5.6309 -4.0364 1.2677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133237359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:46 Heat of formation + Delta-G solvation = 45.538762 kcal Electronic energy + Delta-G solvation = -21139.969236 eV Core-core repulsion = 17949.011401 eV Total energy + Delta-G solvation = -3190.957836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47513 -39.55385 -37.31601 -35.64887 -34.27108 -32.75357 -31.21888 -29.82809 -28.39164 -26.35366 -25.31469 -24.29469 -22.23746 -21.73918 -19.67490 -18.63238 -17.96106 -17.53940 -17.03733 -16.60705 -15.95019 -15.25097 -14.85676 -14.47766 -14.41426 -13.95668 -13.20942 -13.08805 -12.55054 -12.47462 -12.29908 -11.87355 -11.68173 -11.10823 -10.91322 -10.85621 -10.64887 -10.53303 -10.40646 -10.33194 -10.25816 -9.63834 -9.23745 -8.82721 -8.53852 -7.87668 -7.69088 -6.09408 -4.04566 1.20588 1.33739 1.52958 2.20027 3.21775 3.30954 3.33255 3.53232 3.72951 4.28773 4.37724 4.95840 5.11132 5.19282 5.36561 5.42067 5.49863 5.70970 5.74229 5.97022 6.09751 6.24765 6.35523 6.41847 6.48531 6.55195 6.60661 6.72672 6.97486 7.14926 7.25979 7.47378 7.49090 7.67991 7.88447 8.40117 8.54072 9.08485 9.52789 11.03031 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.008360 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.926038 B = 3348.517145 C = 3420.941535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.193 3.807 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.090 0.910 6 C 0.082 3.918 7 N -0.880 5.880 8 Si 0.856 3.144 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.257 1.257 12 N -0.516 5.516 13 C 0.026 3.974 14 C 0.236 3.764 15 C -0.195 4.195 16 C -0.032 4.032 17 C -0.207 4.207 18 C 0.263 3.737 19 N -0.872 5.872 20 C -0.083 4.083 21 N 0.042 4.958 22 O -0.178 6.178 23 O -0.117 6.117 24 H 0.025 0.975 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.406 0.594 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 2.562 11.194 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.088 3.912 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.108 0.892 6 C -0.121 4.121 7 N -0.516 5.516 8 Si 0.683 3.317 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.181 1.181 12 N -0.239 5.239 13 C -0.121 4.121 14 C 0.139 3.861 15 C -0.217 4.217 16 C -0.051 4.051 17 C -0.230 4.230 18 C 0.155 3.845 19 N -0.411 5.411 20 C -0.170 4.170 21 N 0.572 4.428 22 O -0.393 6.393 23 O -0.348 6.348 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.236 0.764 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.784 2.755 11.041 13.787 hybrid contribution -0.099 1.152 -0.452 1.241 sum 7.685 3.907 10.589 13.655 Atomic orbital electron populations 1.22226 0.97313 1.01095 0.99224 1.19808 0.92323 0.91958 0.87095 0.97940 1.20970 1.35792 1.11247 0.87741 0.89198 1.24810 0.94728 0.96834 0.95761 1.69983 1.48128 1.35077 0.98417 0.87310 0.78948 0.87027 0.78436 1.20775 1.21062 1.18128 1.59798 1.02998 1.56646 1.04450 1.22468 1.01431 0.96631 0.91541 1.17984 0.90439 0.89195 0.88434 1.21345 0.94413 0.97912 1.08065 1.20924 0.93942 0.97359 0.92882 1.20395 0.99478 0.89948 1.13205 1.17097 0.87575 0.87826 0.91971 1.42450 1.09687 1.04635 1.84288 1.20200 0.89127 0.84072 1.23629 1.43121 0.98638 1.01154 0.99890 1.94443 1.57366 1.65516 1.21979 1.94616 1.56419 1.63731 1.20006 0.95581 0.92679 0.92242 0.92649 0.95450 0.90231 0.91929 0.85028 0.85043 0.84780 0.76437 0.77280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 7.97 37.16 0.30 -2.79 16 2 C 0.19 4.52 1.36 -68.86 -0.09 4.43 16 3 H 0.00 0.07 5.79 -51.93 -0.30 -0.23 16 4 C -0.52 -14.56 8.46 -34.44 -0.29 -14.85 16 5 H 0.09 2.83 6.58 -52.48 -0.35 2.48 16 6 C 0.08 2.34 5.33 -17.82 -0.09 2.24 16 7 N -0.88 -26.78 13.96 55.43 0.77 -26.00 16 8 Si 0.86 20.71 25.75 -169.99 -4.38 16.34 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.26 -5.80 5.49 56.52 0.31 -5.49 16 12 N -0.52 -10.98 4.32 -172.70 -0.75 -11.72 16 13 C 0.03 0.44 9.03 60.06 0.54 0.98 16 14 C 0.24 4.75 3.63 -83.82 -0.30 4.44 16 15 C -0.19 -3.34 8.58 -39.34 -0.34 -3.68 16 16 C -0.03 -0.44 10.03 -39.64 -0.40 -0.84 16 17 C -0.21 -2.82 9.89 -39.34 -0.39 -3.21 16 18 C 0.26 4.26 6.75 -83.82 -0.57 3.70 16 19 N -0.87 -11.32 9.08 32.40 0.29 -11.03 16 20 C -0.08 -1.67 5.92 -79.54 -0.47 -2.14 16 21 N 0.04 0.91 3.18 34.16 0.11 1.02 16 22 O -0.18 -3.76 19.26 -29.46 -0.57 -4.32 16 23 O -0.12 -2.83 18.39 -29.46 -0.54 -3.37 16 24 H 0.03 0.48 6.56 -51.93 -0.34 0.14 16 25 H 0.05 1.24 4.94 -51.93 -0.26 0.98 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.03 0.42 7.34 -51.93 -0.38 0.04 16 29 H 0.08 1.28 6.14 -51.92 -0.32 0.97 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.13 2.12 7.02 -52.49 -0.37 1.75 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.41 3.75 8.84 -40.82 -0.36 3.39 16 35 H 0.40 5.45 8.08 -40.82 -0.33 5.12 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -32.94 292.58 -6.67 -39.61 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -3.92 Total: 6.78 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.11 Total: -11.71 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.43 Total: -47.73 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -1.11 Total: -7.69 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.38 Total: 16.34 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.94 -6.67 -39.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133237359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.149 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds