Wall clock time and date at job start Mon Mar 30 2020 04:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47267 * 2 1 4 4 C 1.50699 * 109.47254 * 240.00377 * 2 1 3 5 5 H 1.08005 * 119.99938 * 243.88946 * 4 2 1 6 6 C 1.37873 * 120.00375 * 63.88098 * 4 2 1 7 7 N 1.31508 * 120.00752 * 195.65273 * 6 4 2 8 8 Si 1.86803 * 119.99652 * 15.66011 * 6 4 2 9 9 H 1.48494 * 109.47368 * 95.52423 * 8 6 4 10 10 H 1.48508 * 109.47240 * 215.52721 * 8 6 4 11 11 H 1.48500 * 109.47031 * 335.52211 * 8 6 4 12 12 N 1.46902 * 109.47598 * 120.00107 * 2 1 3 13 13 C 1.46894 * 110.99841 * 302.99225 * 12 2 1 14 14 C 1.39664 * 111.00294 * 179.03890 * 12 2 1 15 15 C 1.38996 * 120.03580 * 60.03327 * 14 12 2 16 16 C 1.38132 * 120.07115 * 179.74660 * 15 14 12 17 17 C 1.38180 * 120.15033 * 0.27348 * 16 15 14 18 18 C 1.38952 * 120.07175 * 359.97438 * 17 16 15 19 19 N 1.39668 * 120.03597 * 179.97438 * 18 17 16 20 20 C 1.38752 * 120.03947 * 240.29030 * 14 12 2 21 21 N 1.48033 * 120.07113 * 359.97438 * 20 14 12 22 22 O 1.21801 * 120.00095 * 270.25637 * 21 20 14 23 23 O 1.21802 * 119.99624 * 90.25669 * 21 20 14 24 24 H 1.08996 * 109.46690 * 304.89289 * 1 2 3 25 25 H 1.08992 * 109.47455 * 64.90187 * 1 2 3 26 26 H 1.08999 * 109.46613 * 184.89870 * 1 2 3 27 27 H 0.97001 * 120.00844 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47478 * 296.04981 * 13 12 2 29 29 H 1.09009 * 109.47381 * 56.04486 * 13 12 2 30 30 H 1.09006 * 109.47218 * 176.04060 * 13 12 2 31 31 H 1.08001 * 119.96431 * 0.02562 * 15 14 12 32 32 H 1.07996 * 119.92794 * 180.25179 * 16 15 14 33 33 H 1.08000 * 119.96467 * 180.02562 * 17 16 15 34 34 H 0.96997 * 120.00260 * 0.02562 * 19 18 17 35 35 H 0.97007 * 119.99966 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6005 -1.6236 -1.1327 6 6 1.7666 -0.1944 -2.4811 7 7 1.9239 -0.9452 -3.5493 8 14 1.1833 1.5713 -2.6584 9 1 2.3455 2.4503 -2.9443 10 1 0.2084 1.6609 -3.7751 11 1 0.5320 2.0065 -1.3968 12 7 2.0198 -0.6925 1.1994 13 6 1.4913 -0.0690 2.4199 14 6 3.4158 -0.7301 1.2207 15 6 4.1436 0.4540 1.2254 16 6 5.5242 0.4178 1.2518 17 6 6.1864 -0.7949 1.2680 18 6 5.4650 -1.9824 1.2583 19 7 6.1351 -3.2077 1.2741 20 6 4.0777 -1.9495 1.2320 21 7 3.3058 -3.2126 1.2219 22 8 2.9685 -3.7286 2.2724 23 8 3.0080 -3.7359 0.1631 24 1 -0.3632 0.5879 0.8429 25 1 -0.3634 0.4359 -0.9305 26 1 -0.3632 -1.0239 0.0878 27 1 1.7373 -0.5822 -4.4292 28 1 1.8671 0.9511 2.4989 29 1 0.4021 -0.0526 2.3773 30 1 1.8121 -0.6429 3.2894 31 1 3.6291 1.4035 1.2129 32 1 6.0874 1.3392 1.2594 33 1 7.2659 -0.8198 1.2890 34 1 7.1046 -3.2301 1.2922 35 1 5.6309 -4.0364 1.2677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133237359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:45 Heat of formation + Delta-G solvation = 21.296067 kcal Electronic energy + Delta-G solvation = -21141.020478 eV Core-core repulsion = 17949.011401 eV Total energy + Delta-G solvation = -3192.009078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.07809 -40.95103 -38.73513 -37.35701 -35.58989 -34.63734 -32.76244 -31.46419 -29.67565 -27.89414 -26.91899 -26.04093 -23.67914 -23.14291 -21.31166 -20.11294 -19.62959 -19.05123 -18.65806 -18.23911 -17.36288 -16.80266 -16.14563 -16.00701 -15.77265 -15.55547 -14.85194 -14.50034 -14.37220 -13.89893 -13.57270 -13.38159 -13.04533 -12.76761 -12.65712 -12.57301 -12.37009 -12.25806 -12.09374 -11.98426 -11.75091 -11.46057 -11.20392 -10.64525 -10.14410 -9.43201 -8.86956 -8.25295 -6.25344 -0.39936 -0.07232 0.28634 0.68847 1.32520 1.35085 1.44713 2.34830 2.36490 2.53652 2.91147 3.07337 3.78074 3.92498 4.11514 4.25042 4.27048 4.39686 4.44922 4.58300 4.68575 4.68986 4.83049 4.85900 5.03095 5.15828 5.31195 5.35760 5.39035 5.53198 5.67074 5.87486 5.99797 6.32666 6.53983 6.55419 6.64493 6.85598 7.36113 8.91820 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.008360 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.926038 B = 3348.517145 C = 3420.941535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.199 3.801 3 H 0.013 0.987 4 C -0.518 4.518 5 H 0.039 0.961 6 C 0.021 3.979 7 N -0.938 5.938 8 Si 0.926 3.074 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.226 1.226 12 N -0.540 5.540 13 C 0.026 3.974 14 C 0.203 3.797 15 C -0.208 4.208 16 C -0.018 4.018 17 C -0.194 4.194 18 C 0.255 3.745 19 N -0.860 5.860 20 C -0.123 4.123 21 N 0.052 4.948 22 O -0.141 6.141 23 O -0.205 6.205 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.425 0.575 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 5.641 13.322 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.093 3.907 3 H 0.031 0.969 4 C -0.556 4.556 5 H 0.057 0.943 6 C -0.177 4.177 7 N -0.578 5.578 8 Si 0.750 3.250 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.148 1.148 12 N -0.263 5.263 13 C -0.120 4.120 14 C 0.107 3.893 15 C -0.231 4.231 16 C -0.037 4.037 17 C -0.217 4.217 18 C 0.146 3.854 19 N -0.400 5.400 20 C -0.210 4.210 21 N 0.578 4.422 22 O -0.372 6.372 23 O -0.416 6.416 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.196 0.804 33 H 0.197 0.803 34 H 0.258 0.742 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.210 5.814 13.032 16.984 hybrid contribution -0.384 0.092 -0.886 0.971 sum 8.825 5.907 12.146 16.134 Atomic orbital electron populations 1.22145 0.96262 1.00686 1.00503 1.19591 0.92960 0.91737 0.86365 0.96923 1.21158 1.34645 1.09705 0.90126 0.94251 1.25718 0.95231 1.01617 0.95159 1.70158 1.50891 1.37590 0.99135 0.86183 0.78657 0.80735 0.79472 1.20016 1.21414 1.14825 1.59593 1.04454 1.57395 1.04895 1.22549 1.01699 0.97719 0.90002 1.18250 0.90166 0.90202 0.90703 1.21575 0.95969 0.96987 1.08542 1.21480 0.92897 0.99341 0.89995 1.20992 1.01539 0.88607 1.10587 1.17486 0.86489 0.89814 0.91606 1.42458 1.10695 1.03622 1.83202 1.20618 0.90503 0.82677 1.27212 1.43486 0.97939 1.01628 0.99114 1.94364 1.55494 1.65510 1.21831 1.94633 1.60205 1.65966 1.20783 0.91582 0.93420 0.94153 0.92718 0.93257 0.89633 0.91231 0.84015 0.80391 0.80256 0.74171 0.77839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 7.97 71.98 0.57 -5.29 16 2 C 0.20 9.19 1.36 44.17 0.06 9.25 16 3 H 0.01 0.58 5.79 -2.39 -0.01 0.57 16 4 C -0.52 -29.97 8.46 25.60 0.22 -29.76 16 5 H 0.04 2.64 6.58 -2.91 -0.02 2.62 16 6 C 0.02 1.22 5.33 84.65 0.45 1.67 16 7 N -0.94 -59.77 13.96 21.44 0.30 -59.47 16 8 Si 0.93 42.62 25.75 68.60 1.77 44.38 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.23 -9.15 5.49 99.48 0.55 -8.60 16 12 N -0.54 -22.74 4.32 -700.30 -3.03 -25.77 16 13 C 0.03 0.83 9.03 127.69 1.15 1.98 16 14 C 0.20 8.04 3.63 38.20 0.14 8.18 16 15 C -0.21 -6.59 8.58 22.43 0.19 -6.40 16 16 C -0.02 -0.43 10.03 22.23 0.22 -0.20 16 17 C -0.19 -4.53 9.89 22.43 0.22 -4.31 16 18 C 0.26 7.91 6.75 38.20 0.26 8.17 16 19 N -0.86 -21.32 9.08 -51.42 -0.47 -21.78 16 20 C -0.12 -4.96 5.92 36.63 0.22 -4.74 16 21 N 0.05 2.35 3.18 -45.84 -0.15 2.21 16 22 O -0.14 -6.04 19.26 18.89 0.36 -5.67 16 23 O -0.21 -10.79 18.39 18.88 0.35 -10.44 16 24 H 0.07 2.25 6.56 -2.39 -0.02 2.23 16 25 H 0.05 2.06 4.94 -2.39 -0.01 2.05 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 28 H 0.05 1.34 7.34 -2.39 -0.02 1.32 16 29 H 0.09 2.55 6.14 -2.38 -0.01 2.53 16 30 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.14 4.08 7.02 -2.91 -0.02 4.06 16 32 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.42 6.83 8.84 -92.71 -0.82 6.01 16 35 H 0.39 10.84 8.08 -92.70 -0.75 10.09 16 Total: -1.00 -77.73 292.58 2.26 -75.47 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.58 Total: 22.54 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 3.71 Total: -21.47 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.34 Total: -104.82 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.71 Total: -16.11 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.77 Total: 44.38 kcal Total: -77.73 2.26 -75.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133237359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.766 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds