Wall clock time and date at job start Mon Mar 30 2020 05:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00117 * 2 1 4 4 C 1.52996 * 109.47389 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47055 * 65.00068 * 4 3 2 6 6 C 1.46502 * 119.99924 * 270.00275 * 5 4 3 7 7 C 1.50697 * 109.47046 * 275.96249 * 6 5 4 8 8 H 1.07998 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00135 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99993 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00397 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47280 * 59.99906 * 11 9 7 13 13 H 1.48493 * 109.47728 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47089 * 300.00358 * 11 9 7 15 15 C 1.34776 * 119.99501 * 89.99756 * 5 4 3 16 16 O 1.21507 * 120.00631 * 4.59038 * 15 5 4 17 17 C 1.48138 * 119.99399 * 184.58025 * 15 5 4 18 18 C 1.40111 * 121.14851 * 312.01450 * 17 15 5 19 19 C 1.38505 * 117.82093 * 179.97438 * 18 17 15 20 20 N 1.31914 * 119.97206 * 0.02562 * 19 18 17 21 21 N 1.28281 * 122.51455 * 359.97438 * 20 19 18 22 22 C 1.31918 * 122.32932 * 359.97438 * 21 20 19 23 23 H 1.08994 * 109.46804 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46894 * 299.99404 * 1 2 3 25 25 H 1.08998 * 109.47104 * 59.99950 * 1 2 3 26 26 H 1.09001 * 109.46646 * 59.99796 * 3 2 1 27 27 H 1.08996 * 109.47263 * 300.00455 * 3 2 1 28 28 H 1.09003 * 109.47094 * 305.00640 * 4 3 2 29 29 H 1.08999 * 109.47238 * 185.00393 * 4 3 2 30 30 H 1.09000 * 109.47314 * 35.96947 * 6 5 4 31 31 H 1.09006 * 109.46556 * 155.96842 * 6 5 4 32 32 H 0.97006 * 120.00218 * 179.97438 * 10 9 7 33 33 H 1.07990 * 121.09019 * 359.95998 * 18 17 15 34 34 H 1.07997 * 120.01260 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.17718 * 180.27270 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1052 -0.8921 -1.3428 7 6 5.4499 -1.3109 -0.8069 8 1 6.1390 -0.5666 -0.4359 9 6 5.8006 -2.6441 -0.7902 10 7 4.9617 -3.5504 -1.2424 11 14 7.4672 -3.1634 -0.1252 12 1 7.5866 -2.7433 1.2941 13 1 7.5991 -4.6396 -0.2177 14 1 8.5412 -2.5200 -0.9239 15 6 4.2614 1.3339 -2.3218 16 8 4.2348 2.5447 -2.2235 17 6 4.6082 0.7033 -3.6166 18 6 5.5504 -0.3310 -3.6897 19 6 5.8219 -0.8713 -4.9358 20 7 5.2007 -0.4094 -6.0039 21 7 4.3371 0.5373 -5.9438 22 6 4.0060 1.1190 -4.8071 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8515 0.5681 0.8409 29 1 3.9785 2.1765 0.0890 30 1 3.3171 -1.3639 -0.7560 31 1 4.0170 -1.2009 -2.3845 32 1 5.2085 -4.4885 -1.2310 33 1 6.0489 -0.6950 -2.8035 34 1 6.5425 -1.6699 -5.0330 35 1 3.2710 1.9102 -4.7961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135472123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:35 Heat of formation + Delta-G solvation = -18.032557 kcal Electronic energy + Delta-G solvation = -20495.033780 eV Core-core repulsion = 17301.319285 eV Total energy + Delta-G solvation = -3193.714495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73394 -39.07490 -37.46946 -35.23268 -33.08290 -32.63659 -32.06701 -29.81376 -27.36788 -26.19829 -24.89405 -24.04114 -23.07397 -22.44411 -19.28300 -17.34668 -16.84044 -16.73346 -16.35817 -15.93646 -15.82036 -15.29124 -14.87463 -14.57843 -14.43052 -14.17974 -13.77241 -13.13014 -12.85773 -12.49730 -12.08669 -11.87895 -11.61887 -11.48032 -11.11796 -10.97659 -10.73955 -10.59285 -10.37328 -9.97590 -9.87913 -9.67285 -9.52715 -9.46243 -9.04580 -8.68109 -7.93679 -6.32779 -4.42967 0.95141 1.34338 3.09886 3.13890 3.21269 3.23150 3.57593 4.00900 4.07640 4.20363 4.49773 4.87338 4.93307 4.96481 5.12099 5.30305 5.40333 5.52970 5.56064 5.57648 5.60414 5.73443 5.79482 5.91532 6.16457 6.24416 6.41918 6.60515 6.71065 7.12540 7.36064 7.40402 7.61990 7.88775 8.10454 8.55329 8.72766 9.03659 9.24273 10.72540 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.010268 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.716810 B = 2726.136005 C = 4398.838095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.121 3.879 5 N -0.574 5.574 6 C 0.230 3.770 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.071 3.929 10 N -0.878 5.878 11 Si 0.894 3.106 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.559 3.441 16 O -0.562 6.562 17 C -0.122 4.122 18 C -0.063 4.063 19 C 0.034 3.966 20 N -0.244 5.244 21 N -0.260 5.260 22 C 0.076 3.924 23 H 0.083 0.917 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.269 0.731 33 H 0.191 0.809 34 H 0.174 0.826 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 5.088 1.143 6.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.002 4.002 5 N -0.303 5.303 6 C 0.111 3.889 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.514 5.514 11 Si 0.721 3.279 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.346 3.654 16 O -0.443 6.443 17 C -0.137 4.137 18 C -0.091 4.091 19 C -0.130 4.130 20 N -0.086 5.086 21 N -0.101 5.101 22 C -0.088 4.088 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.207 0.793 34 H 0.191 0.809 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.979 5.211 -0.459 6.573 hybrid contribution 0.784 -0.273 2.065 2.225 sum -3.195 4.939 1.605 6.097 Atomic orbital electron populations 1.22691 0.82016 1.02496 0.99235 1.88062 1.18794 1.27303 1.95215 1.23019 0.95017 0.85086 0.99946 1.21414 0.91249 0.99861 0.87723 1.48107 1.62259 1.10177 1.09716 1.19732 0.97980 0.72460 0.98770 1.21433 1.01235 0.92638 1.43652 0.91799 1.24961 0.97503 0.96268 0.94707 1.69927 1.35466 1.01768 1.44267 0.86612 0.83628 0.77723 0.79948 1.19954 1.20969 1.19845 1.18027 0.77558 0.86196 0.83666 1.90702 1.55072 1.13678 1.84880 1.21108 0.99098 0.97754 0.95707 1.23736 0.93621 0.90167 1.01612 1.24285 0.99234 0.99871 0.89623 1.72732 1.02473 1.05145 1.28237 1.72974 1.08929 1.04254 1.23986 1.24241 0.97875 0.98143 0.88578 0.89811 0.94609 0.94605 0.92879 0.93425 0.88848 0.89056 0.92803 0.94495 0.92130 0.79270 0.80923 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.41 9.44 -35.23 -0.33 -6.74 16 3 C 0.05 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 2.08 5.86 -4.04 -0.02 2.06 16 5 N -0.57 -11.48 2.42 -176.06 -0.43 -11.91 16 6 C 0.23 5.19 4.53 -5.19 -0.02 5.16 16 7 C -0.55 -13.04 6.91 -34.44 -0.24 -13.28 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.88 -22.63 13.29 55.43 0.74 -21.90 16 11 Si 0.89 18.97 29.54 -169.99 -5.02 13.95 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 15 C 0.56 11.27 7.32 -12.20 -0.09 11.18 16 16 O -0.56 -11.98 16.60 5.36 0.09 -11.89 16 17 C -0.12 -2.35 4.97 -104.57 -0.52 -2.87 16 18 C -0.06 -1.19 7.74 -38.78 -0.30 -1.49 16 19 C 0.03 0.59 11.30 -17.42 -0.20 0.39 16 20 N -0.24 -4.57 11.48 30.53 0.35 -4.22 16 21 N -0.26 -4.89 11.49 30.78 0.35 -4.54 16 22 C 0.08 1.36 11.06 -16.95 -0.19 1.17 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 29 H 0.09 1.48 7.36 -51.93 -0.38 1.10 16 30 H 0.05 1.34 7.03 -51.93 -0.37 0.97 16 31 H 0.04 0.88 5.41 -51.93 -0.28 0.60 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.19 3.84 4.93 -52.49 -0.26 3.59 16 34 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 35 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -28.18 303.78 -4.21 -32.40 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.21 Total: 3.83 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.33 Total: 6.44 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 1.01 Total: -42.56 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.24 Total: -18.63 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.18 -4.21 -32.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135472123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.365 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds