Wall clock time and date at job start Mon Mar 30 2020 05:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00117 * 2 1 4 4 C 1.52996 * 109.47389 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47055 * 65.00068 * 4 3 2 6 6 C 1.46502 * 119.99924 * 270.00275 * 5 4 3 7 7 C 1.50697 * 109.47046 * 275.96249 * 6 5 4 8 8 H 1.07998 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00135 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99993 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00397 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47280 * 59.99906 * 11 9 7 13 13 H 1.48493 * 109.47728 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47089 * 300.00358 * 11 9 7 15 15 C 1.34776 * 119.99501 * 89.99756 * 5 4 3 16 16 O 1.21507 * 120.00631 * 4.59038 * 15 5 4 17 17 C 1.48138 * 119.99399 * 184.58025 * 15 5 4 18 18 C 1.40111 * 121.14851 * 312.01450 * 17 15 5 19 19 C 1.38505 * 117.82093 * 179.97438 * 18 17 15 20 20 N 1.31914 * 119.97206 * 0.02562 * 19 18 17 21 21 N 1.28281 * 122.51455 * 359.97438 * 20 19 18 22 22 C 1.31918 * 122.32932 * 359.97438 * 21 20 19 23 23 H 1.08994 * 109.46804 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46894 * 299.99404 * 1 2 3 25 25 H 1.08998 * 109.47104 * 59.99950 * 1 2 3 26 26 H 1.09001 * 109.46646 * 59.99796 * 3 2 1 27 27 H 1.08996 * 109.47263 * 300.00455 * 3 2 1 28 28 H 1.09003 * 109.47094 * 305.00640 * 4 3 2 29 29 H 1.08999 * 109.47238 * 185.00393 * 4 3 2 30 30 H 1.09000 * 109.47314 * 35.96947 * 6 5 4 31 31 H 1.09006 * 109.46556 * 155.96842 * 6 5 4 32 32 H 0.97006 * 120.00218 * 179.97438 * 10 9 7 33 33 H 1.07990 * 121.09019 * 359.95998 * 18 17 15 34 34 H 1.07997 * 120.01260 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.17718 * 180.27270 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1052 -0.8921 -1.3428 7 6 5.4499 -1.3109 -0.8069 8 1 6.1390 -0.5666 -0.4359 9 6 5.8006 -2.6441 -0.7902 10 7 4.9617 -3.5504 -1.2424 11 14 7.4672 -3.1634 -0.1252 12 1 7.5866 -2.7433 1.2941 13 1 7.5991 -4.6396 -0.2177 14 1 8.5412 -2.5200 -0.9239 15 6 4.2614 1.3339 -2.3218 16 8 4.2348 2.5447 -2.2235 17 6 4.6082 0.7033 -3.6166 18 6 5.5504 -0.3310 -3.6897 19 6 5.8219 -0.8713 -4.9358 20 7 5.2007 -0.4094 -6.0039 21 7 4.3371 0.5373 -5.9438 22 6 4.0060 1.1190 -4.8071 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8515 0.5681 0.8409 29 1 3.9785 2.1765 0.0890 30 1 3.3171 -1.3639 -0.7560 31 1 4.0170 -1.2009 -2.3845 32 1 5.2085 -4.4885 -1.2310 33 1 6.0489 -0.6950 -2.8035 34 1 6.5425 -1.6699 -5.0330 35 1 3.2710 1.9102 -4.7961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135472123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:34 Heat of formation + Delta-G solvation = -36.231763 kcal Electronic energy + Delta-G solvation = -20495.822957 eV Core-core repulsion = 17301.319285 eV Total energy + Delta-G solvation = -3194.503672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22027 -40.60971 -38.73266 -36.87229 -34.71641 -34.28458 -33.51282 -31.22796 -29.11113 -27.35463 -26.33472 -25.50285 -24.85356 -23.80957 -20.80801 -18.87387 -18.56306 -18.31682 -17.82046 -17.32482 -17.08115 -16.71406 -16.50990 -15.97309 -15.87543 -15.61816 -15.21303 -14.65139 -14.42275 -14.16560 -13.51905 -13.27559 -13.11143 -12.81620 -12.77053 -12.61279 -12.16963 -12.03716 -11.96804 -11.73695 -11.48789 -11.12808 -11.04771 -10.68067 -10.60614 -10.47124 -9.57811 -8.19688 -6.35675 -0.54524 -0.09165 1.46064 1.48325 1.53403 1.56561 2.04749 2.41532 2.57360 2.92516 3.08635 3.11347 3.34770 3.50452 3.66795 4.05278 4.13006 4.20479 4.37773 4.39627 4.51409 4.54074 4.57738 4.71801 4.83673 4.86376 4.93322 4.98055 5.22248 5.30197 5.60485 5.75906 6.03085 6.25678 6.44606 6.75924 7.04941 7.35635 7.58513 8.85240 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.010268 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.716810 B = 2726.136005 C = 4398.838095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.053 3.947 4 C 0.114 3.886 5 N -0.576 5.576 6 C 0.250 3.750 7 C -0.550 4.550 8 H 0.062 0.938 9 C 0.034 3.966 10 N -0.910 5.910 11 Si 0.950 3.050 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.263 1.263 15 C 0.560 3.440 16 O -0.575 6.575 17 C -0.136 4.136 18 C -0.068 4.068 19 C 0.041 3.959 20 N -0.254 5.254 21 N -0.269 5.269 22 C 0.081 3.919 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.269 0.731 33 H 0.178 0.822 34 H 0.203 0.797 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 5.553 1.417 6.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.304 5.304 6 C 0.130 3.870 7 C -0.588 4.588 8 H 0.080 0.920 9 C -0.169 4.169 10 N -0.547 5.547 11 Si 0.775 3.225 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.187 1.187 15 C 0.347 3.653 16 O -0.457 6.457 17 C -0.150 4.150 18 C -0.097 4.097 19 C -0.123 4.123 20 N -0.096 5.096 21 N -0.110 5.110 22 C -0.083 4.083 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.195 0.805 34 H 0.219 0.781 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.745 5.697 -0.184 6.820 hybrid contribution 0.662 -0.396 1.997 2.141 sum -3.083 5.300 1.813 6.395 Atomic orbital electron populations 1.22869 0.79992 1.03284 1.00709 1.88010 1.21154 1.28346 1.95505 1.22974 0.93385 0.84825 1.01268 1.21625 0.93022 0.99900 0.86272 1.48094 1.62268 1.09241 1.10784 1.19300 0.96693 0.73769 0.97260 1.21551 1.01458 0.92686 1.43153 0.92019 1.25576 1.00246 0.96242 0.94799 1.70027 1.37122 1.01989 1.45598 0.85723 0.80360 0.77141 0.79237 1.20073 1.21137 1.18729 1.18115 0.77260 0.86026 0.83918 1.90686 1.55814 1.14027 1.85148 1.21176 0.99725 0.98244 0.95826 1.23628 0.93841 0.90439 1.01781 1.24661 0.99128 0.99949 0.88605 1.72712 1.02769 1.05402 1.28725 1.72945 1.09199 1.04530 1.24367 1.24527 0.97820 0.98252 0.87724 0.89491 0.92237 0.93934 0.89576 0.93878 0.89392 0.88056 0.95341 0.95845 0.92176 0.80516 0.78052 0.79121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -13.75 9.44 -148.98 -1.41 -15.16 16 3 C 0.05 1.55 6.28 71.98 0.45 2.00 16 4 C 0.11 3.85 5.86 86.38 0.51 4.36 16 5 N -0.58 -22.93 2.42 -829.24 -2.01 -24.93 16 6 C 0.25 11.40 4.53 85.63 0.39 11.78 16 7 C -0.55 -25.98 6.91 25.60 0.18 -25.80 16 8 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.03 1.63 5.46 84.65 0.46 2.09 16 10 N -0.91 -47.02 13.29 21.44 0.28 -46.73 16 11 Si 0.95 38.30 29.54 68.60 2.03 40.33 16 12 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 15 C 0.56 22.28 7.32 86.87 0.64 22.92 16 16 O -0.57 -23.94 16.60 -3.74 -0.06 -24.01 16 17 C -0.14 -5.13 4.97 -19.83 -0.10 -5.23 16 18 C -0.07 -2.53 7.74 22.79 0.18 -2.35 16 19 C 0.04 1.37 11.30 84.74 0.96 2.33 16 20 N -0.25 -9.23 11.48 -57.34 -0.66 -9.89 16 21 N -0.27 -9.83 11.49 -56.53 -0.65 -10.48 16 22 C 0.08 2.82 11.06 85.04 0.94 3.76 16 23 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 3.03 8.07 -2.39 -0.02 3.01 16 29 H 0.10 3.18 7.36 -2.39 -0.02 3.17 16 30 H 0.03 1.45 7.03 -2.39 -0.02 1.43 16 31 H 0.02 1.14 5.41 -2.38 -0.01 1.13 16 32 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16 33 H 0.18 7.14 4.93 -2.92 -0.01 7.13 16 34 H 0.20 5.44 8.06 -2.91 -0.02 5.42 16 35 H 0.19 5.60 8.06 -2.91 -0.02 5.57 16 Total: -1.00 -58.67 303.78 4.47 -54.20 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.10 Total: 18.90 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 5.85 Total: 17.77 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -3.03 Total: -92.03 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.47 Total: -39.16 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -58.67 4.47 -54.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135472123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.964 kcal (2) G-P(sol) polarization free energy of solvation -58.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds