Wall clock time and date at job start Mon Mar 30 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34742 * 117.00416 * 2 1 4 4 O 1.21492 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.47649 * 120.00248 * 179.97438 * 3 2 1 6 6 C 1.39339 * 119.60461 * 180.02562 * 5 3 2 7 7 C 1.38500 * 119.30079 * 179.97438 * 6 5 3 8 8 C 1.39044 * 118.52881 * 359.74456 * 7 6 5 9 9 N 1.39225 * 120.41660 * 180.26511 * 8 7 6 10 10 C 1.40331 * 119.16308 * 0.49677 * 8 7 6 11 11 N 1.39186 * 119.69006 * 179.76569 * 10 8 7 12 12 C 1.46894 * 111.00109 * 245.35409 * 11 10 8 13 13 C 1.46903 * 110.99653 * 121.39756 * 11 10 8 14 14 C 1.50699 * 109.46729 * 190.00467 * 13 11 10 15 15 H 1.08004 * 120.00462 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99969 * 180.02562 * 14 13 11 17 17 N 1.31509 * 119.99664 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47313 * 59.99782 * 18 16 14 20 20 H 1.48498 * 109.47106 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47109 * 299.99710 * 18 16 14 22 22 N 1.31765 * 120.62482 * 359.49809 * 10 8 7 23 23 H 1.09002 * 109.47008 * 59.99816 * 1 2 3 24 24 H 1.09000 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47474 * 299.99929 * 1 2 3 26 26 H 1.07998 * 120.35700 * 359.95331 * 6 5 3 27 27 H 1.08005 * 120.73715 * 180.02562 * 7 6 5 28 28 H 0.97001 * 119.99594 * 185.68152 * 9 8 7 29 29 H 0.96995 * 120.00611 * 5.68355 * 9 8 7 30 30 H 1.08999 * 109.47419 * 289.91184 * 12 11 10 31 31 H 1.08998 * 109.47482 * 49.91802 * 12 11 10 32 32 H 1.09009 * 109.46661 * 169.91758 * 12 11 10 33 33 H 1.09000 * 109.46954 * 310.00230 * 13 11 10 34 34 H 1.08996 * 109.46888 * 70.00669 * 13 11 10 35 35 H 0.97001 * 119.99790 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2195 0.0005 5 6 3.5382 1.2777 0.0006 6 6 4.1623 2.5236 0.0011 7 6 5.5457 2.5887 0.0022 8 6 6.2665 1.3997 0.0081 9 7 7.6586 1.4193 0.0150 10 6 5.5731 0.1796 0.0022 11 7 6.2837 -1.0172 0.0031 12 6 6.0667 -1.7592 -1.2459 13 6 5.9323 -1.8370 1.1704 14 6 6.8863 -2.9990 1.2734 15 1 7.6750 -3.1166 0.5450 16 6 6.7523 -3.9123 2.2977 17 7 5.7923 -3.7689 3.1850 18 14 7.9353 -5.3523 2.4259 19 1 9.3214 -4.8421 2.5792 20 1 7.5793 -6.1818 3.6050 21 1 7.8450 -6.1781 1.1950 22 7 4.2557 0.1564 0.0011 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.5735 3.4290 0.0003 27 1 6.0535 3.5419 0.0030 28 1 8.1557 0.5901 -0.0641 29 1 8.1314 2.2620 0.0988 30 1 5.0448 -2.1374 -1.2711 31 1 6.2298 -1.0961 -2.0955 32 1 6.7648 -2.5948 -1.2980 33 1 5.9994 -1.2307 2.0737 34 1 4.9147 -2.2111 1.0585 35 1 5.6978 -4.4115 3.9054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166955094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:56 Heat of formation + Delta-G solvation = -33.310472 kcal Electronic energy + Delta-G solvation = -19971.272193 eV Core-core repulsion = 16776.895198 eV Total energy + Delta-G solvation = -3194.376995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56152 -39.56555 -36.42614 -35.91763 -34.95528 -32.61585 -31.06488 -29.35346 -27.42482 -27.16965 -25.34129 -23.83944 -22.92264 -21.17527 -20.26824 -18.16494 -17.10198 -16.79273 -16.59467 -16.26923 -16.12952 -15.30776 -14.83671 -14.41565 -14.09950 -13.77811 -13.27469 -13.20592 -12.88908 -12.66947 -12.51749 -11.98600 -11.89077 -11.35717 -11.06938 -10.99167 -10.83261 -10.58110 -10.56445 -10.50729 -10.06257 -9.50911 -9.31612 -9.10472 -8.46766 -7.68190 -7.43067 -6.02358 -4.05373 0.99632 1.52055 2.72892 2.92445 3.32498 3.37154 3.38851 3.94726 4.13129 4.31024 4.50612 4.73059 5.02086 5.20177 5.23246 5.30021 5.32700 5.44158 5.60280 5.64774 5.96552 6.06452 6.13923 6.41393 6.49586 6.58023 6.69668 7.21013 7.40072 7.47762 7.76158 7.85597 7.90788 7.96659 8.12239 8.35312 8.51554 9.00612 9.58093 11.08200 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.005911 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.248186 B = 4735.683505 C = 5795.805684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.333 6.333 3 C 0.533 3.467 4 O -0.522 6.522 5 C 0.014 3.986 6 C -0.060 4.060 7 C -0.187 4.187 8 C 0.232 3.768 9 N -0.841 5.841 10 C 0.244 3.756 11 N -0.489 5.489 12 C 0.045 3.955 13 C 0.202 3.798 14 C -0.514 4.514 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.416 5.416 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.417 0.583 29 H 0.396 0.604 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.012 0.988 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 11.158 -7.531 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C 0.379 3.621 4 O -0.411 6.411 5 C -0.123 4.123 6 C -0.081 4.081 7 C -0.217 4.217 8 C 0.117 3.883 9 N -0.377 5.377 10 C 0.002 3.998 11 N -0.213 5.213 12 C -0.102 4.102 13 C 0.078 3.922 14 C -0.552 4.552 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 N -0.130 5.130 23 H 0.078 0.922 24 H 0.119 0.881 25 H 0.079 0.921 26 H 0.160 0.840 27 H 0.158 0.842 28 H 0.249 0.751 29 H 0.224 0.776 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.030 0.970 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.232 10.647 -7.325 13.115 hybrid contribution 0.311 -0.181 0.274 0.452 sum -1.921 10.465 -7.051 12.765 Atomic orbital electron populations 1.23264 0.76918 1.03661 1.02072 1.86765 1.22539 1.32039 1.83388 1.20842 0.88169 0.81345 0.71783 1.90792 1.66315 1.36215 1.47796 1.19389 0.90021 0.89871 1.12969 1.21614 0.94253 0.97585 0.94630 1.20807 0.93399 0.96850 1.10666 1.18775 0.85691 0.93224 0.90602 1.42410 1.02730 1.12610 1.79945 1.19887 0.85936 0.92123 1.01822 1.60383 1.51222 1.03658 1.06017 1.22188 1.00950 0.97651 0.89453 1.19782 0.96175 0.90984 0.85219 1.21072 1.14313 1.08176 1.11659 0.91842 1.24978 0.95704 0.98122 0.95639 1.69967 1.31731 1.36651 1.14882 0.86548 0.81141 0.82145 0.77446 1.20248 1.21381 1.20240 1.67778 1.08212 1.30429 1.06584 0.92195 0.88099 0.92055 0.83971 0.84247 0.75051 0.77565 0.94806 0.93991 0.90360 0.95602 0.96971 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 101.05 1.07 1.51 16 2 O -0.33 -5.93 10.37 -40.61 -0.42 -6.35 16 3 C 0.53 9.66 7.93 34.57 0.27 9.94 16 4 O -0.52 -9.46 16.09 -19.26 -0.31 -9.77 16 5 C 0.01 0.26 6.74 -83.06 -0.56 -0.30 16 6 C -0.06 -0.88 9.61 -39.08 -0.38 -1.26 16 7 C -0.19 -2.47 10.02 -39.19 -0.39 -2.87 16 8 C 0.23 3.61 6.81 -83.42 -0.57 3.04 16 9 N -0.84 -10.39 9.04 32.63 0.30 -10.09 16 10 C 0.24 4.77 5.28 -154.92 -0.82 3.95 16 11 N -0.49 -10.34 3.91 -182.16 -0.71 -11.06 16 12 C 0.05 0.88 9.15 60.06 0.55 1.43 16 13 C 0.20 5.31 4.44 -4.97 -0.02 5.28 16 14 C -0.51 -14.05 8.59 -34.44 -0.30 -14.34 16 15 H 0.06 1.67 7.10 -52.48 -0.37 1.29 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 18 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 N -0.42 -8.57 9.58 -8.83 -0.08 -8.66 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.14 1.81 7.62 -52.49 -0.40 1.41 16 27 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.42 5.59 8.13 -40.82 -0.33 5.26 16 29 H 0.40 3.45 8.85 -40.82 -0.36 3.08 16 30 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 31 H 0.04 0.70 8.05 -51.93 -0.42 0.28 16 32 H 0.08 1.52 7.04 -51.92 -0.37 1.15 16 33 H 0.03 0.74 8.06 -51.93 -0.42 0.33 16 34 H 0.01 0.36 8.00 -51.93 -0.42 -0.05 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -32.84 309.43 -6.42 -39.26 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.33 Total: 3.77 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.24 Total: 7.90 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.23 Total: -55.70 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.73 Total: -16.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.84 -6.42 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166955094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.947 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds