Wall clock time and date at job start Mon Mar 30 2020 05:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34742 * 117.00416 * 2 1 4 4 O 1.21492 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.47649 * 120.00248 * 179.97438 * 3 2 1 6 6 C 1.39339 * 119.60461 * 180.02562 * 5 3 2 7 7 C 1.38500 * 119.30079 * 179.97438 * 6 5 3 8 8 C 1.39044 * 118.52881 * 359.74456 * 7 6 5 9 9 N 1.39225 * 120.41660 * 180.26511 * 8 7 6 10 10 C 1.40331 * 119.16308 * 0.49677 * 8 7 6 11 11 N 1.39186 * 119.69006 * 179.76569 * 10 8 7 12 12 C 1.46894 * 111.00109 * 245.35409 * 11 10 8 13 13 C 1.46903 * 110.99653 * 121.39756 * 11 10 8 14 14 C 1.50699 * 109.46729 * 190.00467 * 13 11 10 15 15 H 1.08004 * 120.00462 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99969 * 180.02562 * 14 13 11 17 17 N 1.31509 * 119.99664 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47313 * 59.99782 * 18 16 14 20 20 H 1.48498 * 109.47106 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47109 * 299.99710 * 18 16 14 22 22 N 1.31765 * 120.62482 * 359.49809 * 10 8 7 23 23 H 1.09002 * 109.47008 * 59.99816 * 1 2 3 24 24 H 1.09000 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47474 * 299.99929 * 1 2 3 26 26 H 1.07998 * 120.35700 * 359.95331 * 6 5 3 27 27 H 1.08005 * 120.73715 * 180.02562 * 7 6 5 28 28 H 0.97001 * 119.99594 * 185.68152 * 9 8 7 29 29 H 0.96995 * 120.00611 * 5.68355 * 9 8 7 30 30 H 1.08999 * 109.47419 * 289.91184 * 12 11 10 31 31 H 1.08998 * 109.47482 * 49.91802 * 12 11 10 32 32 H 1.09009 * 109.46661 * 169.91758 * 12 11 10 33 33 H 1.09000 * 109.46954 * 310.00230 * 13 11 10 34 34 H 1.08996 * 109.46888 * 70.00669 * 13 11 10 35 35 H 0.97001 * 119.99790 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2195 0.0005 5 6 3.5382 1.2777 0.0006 6 6 4.1623 2.5236 0.0011 7 6 5.5457 2.5887 0.0022 8 6 6.2665 1.3997 0.0081 9 7 7.6586 1.4193 0.0150 10 6 5.5731 0.1796 0.0022 11 7 6.2837 -1.0172 0.0031 12 6 6.0667 -1.7592 -1.2459 13 6 5.9323 -1.8370 1.1704 14 6 6.8863 -2.9990 1.2734 15 1 7.6750 -3.1166 0.5450 16 6 6.7523 -3.9123 2.2977 17 7 5.7923 -3.7689 3.1850 18 14 7.9353 -5.3523 2.4259 19 1 9.3214 -4.8421 2.5792 20 1 7.5793 -6.1818 3.6050 21 1 7.8450 -6.1781 1.1950 22 7 4.2557 0.1564 0.0011 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.5735 3.4290 0.0003 27 1 6.0535 3.5419 0.0030 28 1 8.1557 0.5901 -0.0641 29 1 8.1314 2.2620 0.0988 30 1 5.0448 -2.1374 -1.2711 31 1 6.2298 -1.0961 -2.0955 32 1 6.7648 -2.5948 -1.2980 33 1 5.9994 -1.2307 2.0737 34 1 4.9147 -2.2111 1.0585 35 1 5.6978 -4.4115 3.9054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166955094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:55 Heat of formation + Delta-G solvation = -57.351008 kcal Electronic energy + Delta-G solvation = -19972.314669 eV Core-core repulsion = 16776.895198 eV Total energy + Delta-G solvation = -3195.419471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.88331 -40.90786 -37.91062 -37.37374 -36.15885 -34.67975 -32.39779 -30.65620 -29.24950 -28.45209 -26.96135 -25.24495 -24.49322 -22.64243 -21.77400 -19.49398 -18.56535 -18.28972 -17.92032 -17.77304 -17.43285 -16.91203 -16.53386 -15.87753 -15.62510 -14.96948 -14.84399 -14.66284 -14.19698 -14.05108 -13.94615 -13.65849 -13.14936 -13.00526 -12.85060 -12.62980 -12.39904 -12.28514 -12.05290 -11.89459 -11.80965 -11.44481 -10.65713 -10.60628 -10.52910 -9.46867 -8.63430 -8.17215 -6.29429 -0.28390 0.26872 1.40142 1.44522 1.48239 1.55893 1.73312 2.41805 2.78380 2.86428 2.97888 3.16096 3.41369 3.87942 4.06388 4.21829 4.23224 4.26356 4.30322 4.59953 4.63616 4.73417 4.83932 4.98352 5.04561 5.20167 5.26559 5.28649 5.41084 5.67528 6.01747 6.08819 6.29041 6.52883 6.70013 6.85277 6.94409 7.05246 7.40293 8.94018 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.005911 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.248186 B = 4735.683505 C = 5795.805684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.530 3.470 4 O -0.529 6.529 5 C -0.018 4.018 6 C -0.045 4.045 7 C -0.166 4.166 8 C 0.239 3.761 9 N -0.823 5.823 10 C 0.197 3.803 11 N -0.477 5.477 12 C 0.051 3.949 13 C 0.227 3.773 14 C -0.523 4.523 15 H 0.075 0.925 16 C -0.001 4.001 17 N -0.937 5.937 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.289 1.289 21 H -0.266 1.266 22 N -0.452 5.452 23 H 0.072 0.928 24 H 0.122 0.878 25 H 0.066 0.934 26 H 0.168 0.832 27 H 0.192 0.808 28 H 0.415 0.585 29 H 0.418 0.582 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.076 0.924 33 H -0.010 1.010 34 H -0.034 1.034 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 12.586 -8.395 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.376 3.624 4 O -0.420 6.420 5 C -0.155 4.155 6 C -0.067 4.067 7 C -0.196 4.196 8 C 0.122 3.878 9 N -0.359 5.359 10 C -0.044 4.044 11 N -0.200 5.200 12 C -0.097 4.097 13 C 0.101 3.899 14 C -0.562 4.562 15 H 0.093 0.907 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.214 1.214 21 H -0.191 1.191 22 N -0.166 5.166 23 H 0.091 0.909 24 H 0.141 0.859 25 H 0.085 0.915 26 H 0.185 0.815 27 H 0.209 0.791 28 H 0.246 0.754 29 H 0.250 0.750 30 H 0.027 0.973 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.008 0.992 34 H -0.016 1.016 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.390 12.110 -8.216 14.639 hybrid contribution -0.303 -0.517 0.511 0.787 sum -0.692 11.594 -7.705 13.937 Atomic orbital electron populations 1.23586 0.74547 1.05479 1.02956 1.86740 1.25161 1.32371 1.83276 1.20969 0.88453 0.81343 0.71619 1.90758 1.66499 1.36160 1.48554 1.19688 0.90064 0.90675 1.15122 1.21957 0.95257 0.97005 0.92435 1.21310 0.92624 0.97832 1.07872 1.18805 0.86895 0.92466 0.89654 1.42397 1.01547 1.13732 1.78205 1.20010 0.86210 0.92529 1.05632 1.60249 1.51388 1.03663 1.04684 1.22160 0.99331 0.98236 0.89952 1.19244 0.93592 0.90898 0.86163 1.21435 1.14456 1.08472 1.11803 0.90660 1.25995 0.97453 1.01280 0.95125 1.70137 1.33892 1.37956 1.15715 0.85351 0.78974 0.78168 0.77575 1.18735 1.21431 1.19107 1.67542 1.09163 1.32417 1.07494 0.90901 0.85946 0.91544 0.81452 0.79133 0.75435 0.75022 0.97270 0.90915 0.90512 0.99160 1.01603 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.57 113.37 1.20 1.90 16 2 O -0.36 -13.34 10.37 -56.52 -0.59 -13.93 16 3 C 0.53 19.57 7.93 70.31 0.56 20.13 16 4 O -0.53 -19.06 16.09 19.86 0.32 -18.74 16 5 C -0.02 -0.68 6.74 41.70 0.28 -0.40 16 6 C -0.05 -1.24 9.61 22.60 0.22 -1.03 16 7 C -0.17 -3.79 10.02 22.53 0.23 -3.56 16 8 C 0.24 6.93 6.81 38.67 0.26 7.19 16 9 N -0.82 -17.95 9.04 -50.69 -0.46 -18.41 16 10 C 0.20 7.78 5.28 133.48 0.70 8.48 16 11 N -0.48 -20.62 3.91 -730.22 -2.85 -23.48 16 12 C 0.05 2.01 9.15 127.69 1.17 3.17 16 13 C 0.23 12.49 4.44 85.56 0.38 12.87 16 14 C -0.52 -29.21 8.59 25.60 0.22 -28.99 16 15 H 0.08 3.93 7.10 -2.91 -0.02 3.91 16 16 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 17 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 18 Si 0.98 43.70 29.54 68.60 2.03 45.72 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 N -0.45 -19.28 9.58 -181.86 -1.74 -21.03 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.17 3.71 7.62 -2.91 -0.02 3.69 16 27 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 28 H 0.41 10.19 8.13 -92.71 -0.75 9.44 16 29 H 0.42 5.53 8.85 -92.71 -0.82 4.71 16 30 H 0.01 0.38 8.06 -2.39 -0.02 0.36 16 31 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 32 H 0.08 2.99 7.04 -2.38 -0.02 2.98 16 33 H -0.01 -0.60 8.06 -2.39 -0.02 -0.61 16 34 H -0.03 -2.14 8.00 -2.39 -0.02 -2.16 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -75.29 309.43 2.22 -73.07 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -0.44 Total: 14.00 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 5.68 Total: 20.20 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -4.77 Total: -120.33 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.27 Total: -32.67 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -75.29 2.22 -73.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166955094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.717 kcal (2) G-P(sol) polarization free energy of solvation -75.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds