Wall clock time and date at job start Mon Mar 30 2020 05:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99934 * 2 1 4 4 C 1.50703 * 109.47356 * 293.95400 * 3 2 1 5 5 H 1.08001 * 119.99362 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00029 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00001 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99716 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47007 * 89.99854 * 8 6 4 10 10 H 1.48499 * 109.47295 * 209.99737 * 8 6 4 11 11 H 1.48499 * 109.47191 * 330.00461 * 8 6 4 12 12 C 1.46899 * 111.00203 * 123.95266 * 2 1 3 13 13 C 1.50703 * 109.47143 * 66.04771 * 12 2 1 14 14 C 1.38124 * 120.03619 * 260.00735 * 13 12 2 15 15 C 1.38265 * 120.07360 * 179.97438 * 14 13 12 16 16 C 1.38308 * 120.14782 * 359.97197 * 15 14 13 17 17 C 1.38086 * 120.07544 * 0.30120 * 16 15 14 18 18 N 1.48008 * 120.03761 * 179.72412 * 17 16 15 19 19 O 1.21799 * 119.99789 * 353.76536 * 18 17 16 20 20 O 1.21790 * 119.99914 * 173.76105 * 18 17 16 21 21 C 1.38884 * 120.03665 * 79.97867 * 13 12 2 22 22 N 1.39678 * 120.07394 * 0.02562 * 21 13 12 23 23 H 1.08996 * 109.47687 * 296.04682 * 1 2 3 24 24 H 1.09002 * 109.47051 * 56.05192 * 1 2 3 25 25 H 1.09005 * 109.46928 * 176.04045 * 1 2 3 26 26 H 1.09006 * 109.47131 * 53.95157 * 3 2 1 27 27 H 1.08993 * 109.47557 * 173.95000 * 3 2 1 28 28 H 0.97005 * 119.99613 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46934 * 306.04868 * 12 2 1 30 30 H 1.08997 * 109.47250 * 186.04940 * 12 2 1 31 31 H 1.08000 * 119.96644 * 359.94743 * 14 13 12 32 32 H 1.07999 * 119.92450 * 179.97438 * 15 14 13 33 33 H 1.08003 * 119.96124 * 180.02562 * 16 15 14 34 34 H 0.97002 * 119.99500 * 154.76361 * 22 21 13 35 35 H 0.96993 * 120.00375 * 334.76747 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0267 3.3496 -1.5284 7 7 2.7110 4.0023 -0.6145 8 14 1.5829 4.1869 -3.1382 9 1 0.2702 4.8667 -2.9971 10 1 2.6250 5.1885 -3.4790 11 1 1.5006 3.1710 -4.2183 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2204 0.9729 14 6 0.5642 -2.7505 1.6627 15 6 0.2343 -4.0847 1.5118 16 6 0.9764 -4.8928 0.6696 17 6 2.0536 -4.3706 -0.0186 18 7 2.8509 -5.2376 -0.9149 19 8 2.6296 -6.4344 -0.9597 20 8 3.7282 -4.7541 -1.6077 21 6 2.3846 -3.0292 0.1268 22 7 3.4701 -2.4963 -0.5723 23 1 -0.3634 0.4512 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0710 26 1 1.5610 1.9274 0.8309 27 1 3.0796 1.3445 0.1083 28 1 2.9856 4.9184 -0.7765 29 1 1.5611 -0.3872 2.0628 30 1 3.0797 -0.6610 1.1756 31 1 -0.0174 -2.1222 2.3211 32 1 -0.6048 -4.4968 2.0526 33 1 0.7158 -5.9345 0.5537 34 1 4.1946 -3.0750 -0.8574 35 1 3.4996 -1.5478 -0.7727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229802241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:16 Heat of formation + Delta-G solvation = 28.250895 kcal Electronic energy + Delta-G solvation = -19953.478390 eV Core-core repulsion = 16761.770896 eV Total energy + Delta-G solvation = -3191.707494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.07273 -39.79684 -36.63369 -36.52829 -34.56077 -32.93405 -31.79955 -29.54198 -27.31267 -26.86146 -26.11072 -24.05772 -22.38573 -21.64454 -20.35608 -18.68521 -18.43451 -17.51339 -17.20149 -16.81215 -16.43908 -15.18343 -14.81280 -14.70534 -14.45414 -14.03455 -13.90187 -13.08454 -12.79467 -12.48137 -12.04989 -11.84340 -11.42294 -11.40322 -11.24113 -11.07649 -11.03047 -10.94771 -10.77331 -10.56862 -10.54497 -9.99439 -9.43091 -9.30579 -8.54816 -7.90227 -7.47772 -6.13619 -4.15721 0.06829 1.20375 1.49809 1.62495 3.25337 3.32398 3.35693 3.38857 3.76663 4.33327 4.38121 4.64150 4.86266 4.93443 5.04305 5.13748 5.23483 5.44855 5.55966 5.79197 5.91163 5.99372 6.05131 6.15752 6.26745 6.32409 6.60965 6.64325 7.08381 7.17042 7.30163 7.64713 7.75850 7.86237 7.90188 8.01416 8.36793 8.91792 9.49523 10.96986 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.004777 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.293810 B = 5860.079867 C = 6425.681188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.538 5.538 3 C 0.192 3.808 4 C -0.510 4.510 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.093 3.907 13 C -0.138 4.138 14 C -0.025 4.025 15 C -0.174 4.174 16 C -0.025 4.025 17 C -0.128 4.128 18 N 0.054 4.946 19 O -0.182 6.182 20 O -0.193 6.193 21 C 0.307 3.693 22 N -0.841 5.841 23 H 0.013 0.987 24 H 0.076 0.924 25 H 0.045 0.955 26 H -0.007 1.007 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.410 0.590 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -13.961 5.884 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.263 5.263 3 C 0.067 3.933 4 C -0.549 4.549 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.035 4.035 13 C -0.143 4.143 14 C -0.045 4.045 15 C -0.195 4.195 16 C -0.045 4.045 17 C -0.219 4.219 18 N 0.562 4.438 19 O -0.394 6.394 20 O -0.398 6.398 21 C 0.192 3.808 22 N -0.386 5.386 23 H 0.032 0.968 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.011 0.989 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.247 0.753 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.315 -13.599 5.820 15.159 hybrid contribution -0.036 0.898 -0.501 1.029 sum -3.351 -12.702 5.319 14.172 Atomic orbital electron populations 1.22240 0.88530 0.99685 1.00788 1.62206 1.07526 1.17946 1.38619 1.19778 0.95357 0.81166 0.96973 1.21118 1.35199 0.96970 1.01614 0.91825 1.24975 0.95142 0.97315 0.97015 1.69948 1.38134 1.11503 1.34082 0.86497 0.78047 0.79264 0.83630 1.20713 1.21191 1.19746 1.20927 1.00703 0.87794 0.94098 1.19734 0.98733 0.97087 0.98757 1.21313 0.93159 0.94900 0.95101 1.20848 1.02454 0.93701 1.02524 1.20723 0.90554 1.01076 0.92135 1.20674 1.02499 0.91147 1.07598 1.43425 0.99705 1.01211 0.99432 1.94487 1.73775 0.98247 1.72868 1.94328 1.26631 1.77442 1.41354 1.17267 0.87435 0.88277 0.87869 1.43400 1.20989 1.14572 1.59689 0.96799 0.90527 0.93609 0.98874 0.95158 0.92818 0.94019 0.90235 0.84608 0.84348 0.83681 0.75319 0.74620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.09 60.06 0.55 1.19 16 2 N -0.54 -10.29 4.55 -245.82 -1.12 -11.41 16 3 C 0.19 4.58 4.72 -4.97 -0.02 4.56 16 4 C -0.51 -13.53 8.46 -34.44 -0.29 -13.82 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.31 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.09 1.45 4.32 -4.97 -0.02 1.43 16 13 C -0.14 -1.87 4.59 -104.42 -0.48 -2.35 16 14 C -0.02 -0.27 8.73 -39.61 -0.35 -0.62 16 15 C -0.17 -1.70 10.04 -39.55 -0.40 -2.10 16 16 C -0.03 -0.29 9.55 -39.61 -0.38 -0.67 16 17 C -0.13 -1.81 6.86 -79.75 -0.55 -2.36 16 18 N 0.05 0.84 4.45 34.06 0.15 0.99 16 19 O -0.18 -2.88 18.46 -29.46 -0.54 -3.42 16 20 O -0.19 -3.14 15.88 -29.46 -0.47 -3.61 16 21 C 0.31 4.42 6.72 -83.79 -0.56 3.85 16 22 N -0.84 -12.02 8.14 32.41 0.26 -11.76 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.08 1.50 6.76 -51.93 -0.35 1.15 16 25 H 0.05 0.71 6.65 -51.93 -0.35 0.36 16 26 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 27 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.04 0.62 7.98 -51.93 -0.41 0.20 16 30 H 0.08 1.24 7.33 -51.93 -0.38 0.86 16 31 H 0.14 1.24 8.04 -52.49 -0.42 0.82 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.15 1.41 7.62 -52.48 -0.40 1.01 16 34 H 0.41 5.57 6.10 -40.82 -0.25 5.32 16 35 H 0.42 6.38 7.60 -40.82 -0.31 6.07 16 LS Contribution 299.94 15.07 4.52 4.52 Total: -1.00 -29.17 299.94 -8.14 -37.31 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.06 Total: 5.68 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.60 Total: -9.43 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.03 Total: -47.01 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -1.01 Total: -7.03 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.17 -8.14 -37.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229802241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.561 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds