Wall clock time and date at job start Mon Mar 30 2020 05:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99934 * 2 1 4 4 C 1.50703 * 109.47356 * 293.95400 * 3 2 1 5 5 H 1.08001 * 119.99362 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00029 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00001 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99716 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47007 * 89.99854 * 8 6 4 10 10 H 1.48499 * 109.47295 * 209.99737 * 8 6 4 11 11 H 1.48499 * 109.47191 * 330.00461 * 8 6 4 12 12 C 1.46899 * 111.00203 * 123.95266 * 2 1 3 13 13 C 1.50703 * 109.47143 * 66.04771 * 12 2 1 14 14 C 1.38124 * 120.03619 * 260.00735 * 13 12 2 15 15 C 1.38265 * 120.07360 * 179.97438 * 14 13 12 16 16 C 1.38308 * 120.14782 * 359.97197 * 15 14 13 17 17 C 1.38086 * 120.07544 * 0.30120 * 16 15 14 18 18 N 1.48008 * 120.03761 * 179.72412 * 17 16 15 19 19 O 1.21799 * 119.99789 * 353.76536 * 18 17 16 20 20 O 1.21790 * 119.99914 * 173.76105 * 18 17 16 21 21 C 1.38884 * 120.03665 * 79.97867 * 13 12 2 22 22 N 1.39678 * 120.07394 * 0.02562 * 21 13 12 23 23 H 1.08996 * 109.47687 * 296.04682 * 1 2 3 24 24 H 1.09002 * 109.47051 * 56.05192 * 1 2 3 25 25 H 1.09005 * 109.46928 * 176.04045 * 1 2 3 26 26 H 1.09006 * 109.47131 * 53.95157 * 3 2 1 27 27 H 1.08993 * 109.47557 * 173.95000 * 3 2 1 28 28 H 0.97005 * 119.99613 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46934 * 306.04868 * 12 2 1 30 30 H 1.08997 * 109.47250 * 186.04940 * 12 2 1 31 31 H 1.08000 * 119.96644 * 359.94743 * 14 13 12 32 32 H 1.07999 * 119.92450 * 179.97438 * 15 14 13 33 33 H 1.08003 * 119.96124 * 180.02562 * 16 15 14 34 34 H 0.97002 * 119.99500 * 154.76361 * 22 21 13 35 35 H 0.96993 * 120.00375 * 334.76747 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0267 3.3496 -1.5284 7 7 2.7110 4.0023 -0.6145 8 14 1.5829 4.1869 -3.1382 9 1 0.2702 4.8667 -2.9971 10 1 2.6250 5.1885 -3.4790 11 1 1.5006 3.1710 -4.2183 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2204 0.9729 14 6 0.5642 -2.7505 1.6627 15 6 0.2343 -4.0847 1.5118 16 6 0.9764 -4.8928 0.6696 17 6 2.0536 -4.3706 -0.0186 18 7 2.8509 -5.2376 -0.9149 19 8 2.6296 -6.4344 -0.9597 20 8 3.7282 -4.7541 -1.6077 21 6 2.3846 -3.0292 0.1268 22 7 3.4701 -2.4963 -0.5723 23 1 -0.3634 0.4512 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0710 26 1 1.5610 1.9274 0.8309 27 1 3.0796 1.3445 0.1083 28 1 2.9856 4.9184 -0.7765 29 1 1.5611 -0.3872 2.0628 30 1 3.0797 -0.6610 1.1756 31 1 -0.0174 -2.1222 2.3211 32 1 -0.6048 -4.4968 2.0526 33 1 0.7158 -5.9345 0.5537 34 1 4.1946 -3.0750 -0.8574 35 1 3.4996 -1.5478 -0.7727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229802241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:15 Heat of formation + Delta-G solvation = 9.560062 kcal Electronic energy + Delta-G solvation = -19954.288886 eV Core-core repulsion = 16761.770896 eV Total energy + Delta-G solvation = -3192.517989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.21394 -40.84996 -38.06037 -37.74088 -35.59583 -34.79767 -33.08069 -30.64951 -29.11504 -28.13621 -27.22049 -25.70609 -23.41903 -23.03492 -21.75280 -19.79585 -19.60383 -18.66113 -18.45505 -18.19418 -17.87751 -16.86722 -16.03632 -15.92701 -15.75364 -15.41903 -15.26138 -14.24323 -14.19347 -13.76647 -13.47864 -13.26381 -12.88887 -12.82079 -12.63530 -12.59883 -12.44652 -12.28087 -12.26118 -12.10146 -11.80877 -11.56461 -11.30776 -10.62696 -10.37862 -9.09015 -8.89340 -8.21184 -6.30221 -1.03223 0.24000 0.44869 0.54581 1.40322 1.41927 1.52583 2.36692 2.44250 2.71796 3.12307 3.31752 3.43837 3.78828 4.04504 4.07982 4.11825 4.29549 4.49308 4.62689 4.72444 4.78685 4.89613 5.07780 5.11790 5.20400 5.26468 5.30923 5.35363 5.63430 5.65597 6.03575 6.19696 6.28900 6.56700 6.59686 6.71509 6.85944 7.39651 8.89109 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.004777 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.293810 B = 5860.079867 C = 6425.681188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.544 5.544 3 C 0.208 3.792 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.006 3.994 7 N -0.932 5.932 8 Si 0.962 3.038 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.269 1.269 12 C 0.098 3.902 13 C -0.154 4.154 14 C -0.011 4.011 15 C -0.154 4.154 16 C -0.023 4.023 17 C -0.144 4.144 18 N 0.054 4.946 19 O -0.185 6.185 20 O -0.224 6.224 21 C 0.291 3.709 22 N -0.846 5.846 23 H 0.021 0.979 24 H 0.053 0.947 25 H 0.073 0.927 26 H -0.032 1.032 27 H 0.009 0.991 28 H 0.264 0.736 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.410 0.590 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 -15.192 6.594 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.268 5.268 3 C 0.082 3.918 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.192 4.192 7 N -0.572 5.572 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.030 4.030 13 C -0.160 4.160 14 C -0.031 4.031 15 C -0.175 4.175 16 C -0.042 4.042 17 C -0.235 4.235 18 N 0.558 4.442 19 O -0.397 6.397 20 O -0.422 6.422 21 C 0.176 3.824 22 N -0.391 5.391 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.092 0.908 26 H -0.014 1.014 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.247 0.753 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.418 -14.850 6.513 17.096 hybrid contribution 0.540 1.189 -0.611 1.442 sum -4.877 -13.661 5.902 15.660 Atomic orbital electron populations 1.22207 0.87430 1.01036 1.00128 1.62064 1.08522 1.15190 1.41008 1.19398 0.93944 0.83529 0.94966 1.21436 1.34709 0.97331 1.02447 0.92173 1.25791 0.95094 0.98112 1.00208 1.70061 1.39333 1.11858 1.35968 0.85488 0.77929 0.78154 0.79677 1.19906 1.20945 1.19338 1.20858 1.00212 0.88806 0.93084 1.19576 1.00401 0.95628 1.00353 1.21693 0.91680 0.95886 0.93851 1.21307 1.02474 0.92647 1.01028 1.21142 0.89357 1.02358 0.91368 1.20947 1.03399 0.90899 1.08231 1.43695 0.99705 1.01312 0.99516 1.94454 1.73674 0.98716 1.72890 1.94327 1.27776 1.77508 1.42590 1.17482 0.87718 0.88786 0.88397 1.43379 1.21455 1.14079 1.60201 0.96042 0.92857 0.90822 1.01440 0.97305 0.92741 0.92894 0.91148 0.81954 0.80084 0.81725 0.75303 0.75463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 9.09 127.69 1.16 2.53 16 2 N -0.54 -20.71 4.55 -931.64 -4.24 -24.95 16 3 C 0.21 10.17 4.72 85.56 0.40 10.58 16 4 C -0.52 -28.03 8.46 25.60 0.22 -27.81 16 5 H 0.06 3.22 7.12 -2.91 -0.02 3.20 16 6 C 0.01 0.35 5.46 84.65 0.46 0.81 16 7 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 8 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 C 0.10 2.98 4.32 85.56 0.37 3.35 16 13 C -0.15 -3.88 4.59 -19.74 -0.09 -3.97 16 14 C -0.01 -0.20 8.73 22.25 0.19 -0.01 16 15 C -0.15 -2.22 10.04 22.29 0.22 -1.99 16 16 C -0.02 -0.44 9.55 22.25 0.21 -0.22 16 17 C -0.14 -3.83 6.86 36.51 0.25 -3.58 16 18 N 0.05 1.66 4.45 -46.16 -0.21 1.46 16 19 O -0.18 -5.67 18.46 18.89 0.35 -5.32 16 20 O -0.22 -7.44 15.88 18.90 0.30 -7.14 16 21 C 0.29 8.11 6.72 38.21 0.26 8.37 16 22 N -0.85 -24.82 8.14 -51.37 -0.42 -25.24 16 23 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.05 2.06 6.76 -2.39 -0.02 2.04 16 25 H 0.07 2.08 6.65 -2.38 -0.02 2.07 16 26 H -0.03 -1.71 8.12 -2.38 -0.02 -1.73 16 27 H 0.01 0.47 7.93 -2.39 -0.02 0.45 16 28 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 29 H 0.05 1.49 7.98 -2.39 -0.02 1.47 16 30 H 0.07 2.24 7.33 -2.39 -0.02 2.22 16 31 H 0.16 2.08 8.04 -2.91 -0.02 2.06 16 32 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.17 2.53 7.62 -2.91 -0.02 2.51 16 34 H 0.41 11.68 6.10 -92.71 -0.57 11.12 16 35 H 0.41 13.09 7.60 -92.71 -0.70 12.38 16 Total: -1.00 -64.09 299.94 1.62 -62.46 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.14 Total: 19.16 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 3.66 Total: -11.95 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -4.58 Total: -102.47 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.65 Total: -12.46 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.09 1.62 -62.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229802241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.025 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds